RNA–Protein interactions for RNA: ENST00000491467.1

SRGAP3-210, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 4

Gene SRGAP3, Length 540 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-210ENST00000491467 CLIP1P30622 1438 aa18.5■□□□□ 0.55
SRGAP3-210ENST00000491467 KIAA0556O60303 1618 aa18.49■□□□□ 0.55
SRGAP3-210ENST00000491467 AKNAQ7Z591 1439 aa18.49■□□□□ 0.55
SRGAP3-210ENST00000491467 ABCA9Q8IUA7 1624 aa18.48■□□□□ 0.55
SRGAP3-210ENST00000491467 RICTORQ6R327 1708 aa18.47■□□□□ 0.55
SRGAP3-210ENST00000491467 ZNF335Q9H4Z2 1342 aaPredicted RBP18.45■□□□□ 0.54
SRGAP3-210ENST00000491467 VPS8Q8N3P4 1428 aa18.41■□□□□ 0.54
SRGAP3-210ENST00000491467 CARMIL1Q5VZK9 1371 aa18.41■□□□□ 0.54
SRGAP3-210ENST00000491467 DENND4BO75064 1496 aaPredicted RBP18.4■□□□□ 0.54
SRGAP3-210ENST00000491467 ZFYVE16Q7Z3T8 1539 aa18.4■□□□□ 0.54
SRGAP3-210ENST00000491467 UGGT2Q9NYU1 1516 aa18.4■□□□□ 0.54
SRGAP3-210ENST00000491467 ARHGEF12Q9NZN5 1544 aa18.39■□□□□ 0.54
SRGAP3-210ENST00000491467 ABCA8O94911 1581 aa18.38■□□□□ 0.53
SRGAP3-210ENST00000491467 EFCAB5A4FU69 1503 aa18.38■□□□□ 0.53
SRGAP3-210ENST00000491467 ARID3CA6NKF2 412 aa18.37■□□□□ 0.53
SRGAP3-210ENST00000491467 TOM1O60784 492 aa18.37■□□□□ 0.53
SRGAP3-210ENST00000491467 NCOA1Q15788 1441 aa18.36■□□□□ 0.53
SRGAP3-210ENST00000491467 RGS17Q9UGC6 210 aaPredicted RBP18.35■□□□□ 0.53
SRGAP3-210ENST00000491467 ZEB1P37275 1124 aaPredicted RBP18.34■□□□□ 0.53
SRGAP3-210ENST00000491467 SENP3Q9H4L4 574 aaPredicted RBP18.33■□□□□ 0.52
SRGAP3-210ENST00000491467 FHOD3Q2V2M9 1422 aa18.32■□□□□ 0.52
SRGAP3-210ENST00000491467 C3P01024 1663 aa18.31■□□□□ 0.52
SRGAP3-210ENST00000491467 ZMYM4Q5VZL5 1548 aa18.3■□□□□ 0.52
SRGAP3-210ENST00000491467 CAMSAP1Q5T5Y3 1602 aa18.3■□□□□ 0.52
SRGAP3-210ENST00000491467 SETD1AO15047 1707 aaKnown RBP18.29■□□□□ 0.52
SRGAP3-210ENST00000491467 NCKAP5LQ9HCH0 1330 aa18.29■□□□□ 0.52
SRGAP3-210ENST00000491467 APLP2Q06481 763 aa18.29■□□□□ 0.52
SRGAP3-210ENST00000491467 CTTNBP2Q8WZ74 1663 aa18.27■□□□□ 0.52
SRGAP3-210ENST00000491467 MAGI2Q86UL8 1455 aa18.26■□□□□ 0.51
SRGAP3-210ENST00000491467 HECW1Q76N89 1606 aa18.25■□□□□ 0.51
SRGAP3-210ENST00000491467 CFAP74Q9C0B2 1584 aa18.24■□□□□ 0.51
SRGAP3-210ENST00000491467 SUPT6HQ7KZ85 1726 aaKnown RBP18.23■□□□□ 0.51
SRGAP3-210ENST00000491467 ATP10BO94823 1461 aa18.23■□□□□ 0.51
SRGAP3-210ENST00000491467 POTEAQ6S8J7 498 aa18.22■□□□□ 0.51
SRGAP3-210ENST00000491467 PPARGC1BQ86YN6 1023 aaKnown RBP18.22■□□□□ 0.51
SRGAP3-210ENST00000491467 ATP10AO60312 1499 aa18.2■□□□□ 0.5
SRGAP3-210ENST00000491467 ARHGAP35Q9NRY4 1499 aa18.2■□□□□ 0.5
SRGAP3-210ENST00000491467 TRAPPC8Q9Y2L5 1435 aa18.2■□□□□ 0.5
SRGAP3-210ENST00000491467 C9orf84Q5VXU9 1444 aa18.19■□□□□ 0.5
SRGAP3-210ENST00000491467 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.18■□□□□ 0.5
SRGAP3-210ENST00000491467 HNRNPUL2Q1KMD3 747 aaKnown RBP18.18■□□□□ 0.5
SRGAP3-210ENST00000491467 ESF1Q9H501 851 aaKnown RBP18.17■□□□□ 0.5
SRGAP3-210ENST00000491467 MAP3K1Q13233 1512 aa18.17■□□□□ 0.5
SRGAP3-210ENST00000491467 PKD2Q13563 968 aa18.13■□□□□ 0.49
SRGAP3-210ENST00000491467 PPP6R1Q9UPN7 881 aa18.13■□□□□ 0.49
SRGAP3-210ENST00000491467 PTPRKQ15262 1439 aa18.13■□□□□ 0.49
SRGAP3-210ENST00000491467 UPF1Q92900 1129 aaKnown RBP eCLIP18.1■□□□□ 0.49
SRGAP3-210ENST00000491467 CPS1P31327 1500 aa18.09■□□□□ 0.49
SRGAP3-210ENST00000491467 RANGAP1P46060 587 aaPredicted RBP18.09■□□□□ 0.49
SRGAP3-210ENST00000491467 ALKQ9UM73 1620 aa18.06■□□□□ 0.48
SRGAP3-210ENST00000491467 SRCAPQ6ZRS2 3230 aa18.06■□□□□ 0.48
SRGAP3-210ENST00000491467 SCAPERQ9BY12 1400 aa18.05■□□□□ 0.48
SRGAP3-210ENST00000491467 PLA2R1Q13018 1463 aa18.03■□□□□ 0.48
SRGAP3-210ENST00000491467 MYT1LQ9UL68 1186 aa18.03■□□□□ 0.48
SRGAP3-210ENST00000491467 TIAM1Q13009 1591 aa18.02■□□□□ 0.48
SRGAP3-210ENST00000491467 TCOF1Q13428 1488 aaKnown RBP18.01■□□□□ 0.47
SRGAP3-210ENST00000491467 SAMD9Q5K651 1589 aa18.01■□□□□ 0.47
SRGAP3-210ENST00000491467 SHANK2Q9UPX8 1470 aa18.01■□□□□ 0.47
SRGAP3-210ENST00000491467 P3H3Q8IVL6 736 aa17.99■□□□□ 0.47
SRGAP3-210ENST00000491467 ZNF142P52746 1687 aaPredicted RBP17.99■□□□□ 0.47
SRGAP3-210ENST00000491467 FYCO1Q9BQS8 1478 aa17.98■□□□□ 0.47
SRGAP3-210ENST00000491467 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.98■□□□□ 0.47
SRGAP3-210ENST00000491467 FMN1Q68DA7 1419 aa17.98■□□□□ 0.47
SRGAP3-210ENST00000491467 RAPGEF6Q8TEU7 1601 aa17.96■□□□□ 0.47
SRGAP3-210ENST00000491467 NPATQ14207 1427 aa17.96■□□□□ 0.47
SRGAP3-210ENST00000491467 MYO3AQ8NEV4 1616 aa17.95■□□□□ 0.46
SRGAP3-210ENST00000491467 PLEKHD1A6NEE1 506 aa17.95■□□□□ 0.46
SRGAP3-210ENST00000491467 CASKIN1Q8WXD9 1431 aa17.95■□□□□ 0.46
SRGAP3-210ENST00000491467 RRBP1Q9P2E9 1410 aaKnown RBP17.94■□□□□ 0.46
SRGAP3-210ENST00000491467 POLR1AO95602 1720 aaPredicted RBP17.94■□□□□ 0.46
SRGAP3-210ENST00000491467 CEP170BQ9Y4F5 1589 aaPredicted RBP17.93■□□□□ 0.46
SRGAP3-210ENST00000491467 CNTLNQ9NXG0 1405 aa17.93■□□□□ 0.46
SRGAP3-210ENST00000491467 CCER1Q8TC90 406 aaPredicted RBP17.93■□□□□ 0.46
SRGAP3-210ENST00000491467 MROH2AA6NES4 1674 aa17.92■□□□□ 0.46
SRGAP3-210ENST00000491467 AGLP35573 1532 aa17.92■□□□□ 0.46
SRGAP3-210ENST00000491467 KANK4Q5T7N3 995 aaPredicted RBP17.91■□□□□ 0.46
SRGAP3-210ENST00000491467 DIP2CQ9Y2E4 1556 aa17.91■□□□□ 0.46
SRGAP3-210ENST00000491467 LRRC9Q6ZRR7 1453 aa17.9■□□□□ 0.46
SRGAP3-210ENST00000491467 TRIM52Q96A61 297 aa17.89■□□□□ 0.45
SRGAP3-210ENST00000491467 REREQ9P2R6 1566 aa17.88■□□□□ 0.45
SRGAP3-210ENST00000491467 RNF17Q9BXT8 1623 aaKnown RBP17.87■□□□□ 0.45
SRGAP3-210ENST00000491467 ZMYM3Q14202 1370 aa17.86■□□□□ 0.45
SRGAP3-210ENST00000491467 ABCA6Q8N139 1617 aa17.85■□□□□ 0.45
SRGAP3-210ENST00000491467 VWDEQ8N2E2 1590 aa17.84■□□□□ 0.45
SRGAP3-210ENST00000491467 ZNF518AQ6AHZ1 1483 aa17.84■□□□□ 0.45
SRGAP3-210ENST00000491467 AFAP1Q8N556 730 aa17.83■□□□□ 0.44
SRGAP3-210ENST00000491467 NEURL4Q96JN8 1562 aa17.82■□□□□ 0.44
SRGAP3-210ENST00000491467 PLCH2O75038 1416 aa17.81■□□□□ 0.44
SRGAP3-210ENST00000491467 CCNB3Q8WWL7 1395 aa17.81■□□□□ 0.44
SRGAP3-210ENST00000491467 NUP153P49790 1475 aaKnown RBP17.81■□□□□ 0.44
SRGAP3-210ENST00000491467 CLTCQ00610 1675 aaKnown RBP17.8■□□□□ 0.44
SRGAP3-210ENST00000491467 EFCAB2Q5VUJ9 269 aa17.8■□□□□ 0.44
SRGAP3-210ENST00000491467 DNMT1P26358 1616 aaKnown RBP17.8■□□□□ 0.44
SRGAP3-210ENST00000491467 KDM5CP41229 1560 aa17.79■□□□□ 0.44
SRGAP3-210ENST00000491467 STRCP1A6NGW2 1772 aa17.79■□□□□ 0.44
SRGAP3-210ENST00000491467 LRRIQ1Q96JM4 1722 aa17.79■□□□□ 0.44
SRGAP3-210ENST00000491467 MYO5CQ9NQX4 1742 aa17.79■□□□□ 0.44
SRGAP3-210ENST00000491467 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.79■□□□□ 0.44
SRGAP3-210ENST00000491467 LRRC7Q96NW7 1537 aa17.78■□□□□ 0.44
SRGAP3-210ENST00000491467 CLSPNQ9HAW4 1339 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms