RNA–Protein interactions for RNA: ENST00000489406.1

UFD1-209, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 2

Gene UFD1, Length 994 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-209ENST00000489406 ARHGEF12Q9NZN5 1544 aa26.39■■□□□ 1.81
UFD1-209ENST00000489406 MAGI2Q86UL8 1455 aa26.36■■□□□ 1.81
UFD1-209ENST00000489406 UBAP1LF5GYI3 381 aa26.34■■□□□ 1.81
UFD1-209ENST00000489406 HECW1Q76N89 1606 aa26.33■■□□□ 1.81
UFD1-209ENST00000489406 CFAP74Q9C0B2 1584 aa26.31■■□□□ 1.8
UFD1-209ENST00000489406 SETD1BQ9UPS6 1966 aaKnown RBP26.27■■□□□ 1.8
UFD1-209ENST00000489406 ATP10AO60312 1499 aa26.27■■□□□ 1.8
UFD1-209ENST00000489406 RAPGEF6Q8TEU7 1601 aa26.27■■□□□ 1.8
UFD1-209ENST00000489406 C9orf84Q5VXU9 1444 aa26.23■■□□□ 1.79
UFD1-209ENST00000489406 PLEKHD1A6NEE1 506 aa26.23■■□□□ 1.79
UFD1-209ENST00000489406 MED1Q15648 1581 aaPredicted RBP26.21■■□□□ 1.79
UFD1-209ENST00000489406 SCAPERQ9BY12 1400 aa26.21■■□□□ 1.79
UFD1-209ENST00000489406 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.2■■□□□ 1.79
UFD1-209ENST00000489406 NUP153P49790 1475 aaKnown RBP26.19■■□□□ 1.78
UFD1-209ENST00000489406 NCOA1Q15788 1441 aa26.18■■□□□ 1.78
UFD1-209ENST00000489406 ZNF335Q9H4Z2 1342 aaPredicted RBP26.17■■□□□ 1.78
UFD1-209ENST00000489406 HSPA1LP34931 641 aa26.14■■□□□ 1.78
UFD1-209ENST00000489406 C3P01024 1663 aa26.11■■□□□ 1.77
UFD1-209ENST00000489406 PHF23Q9BUL5 403 aaPredicted RBP26.1■■□□□ 1.77
UFD1-209ENST00000489406 TRAPPC8Q9Y2L5 1435 aa26.1■■□□□ 1.77
UFD1-209ENST00000489406 SCAF1Q9H7N4 1312 aaKnown RBP26.1■■□□□ 1.77
UFD1-209ENST00000489406 PRXQ9BXM0 1461 aa26.1■■□□□ 1.77
UFD1-209ENST00000489406 SAMD9Q5K651 1589 aa26.07■■□□□ 1.76
UFD1-209ENST00000489406 NCKAP5LQ9HCH0 1330 aa26.07■■□□□ 1.76
UFD1-209ENST00000489406 ESF1Q9H501 851 aaKnown RBP26.06■■□□□ 1.76
UFD1-209ENST00000489406 PIP4K2BP78356 416 aa26.05■■□□□ 1.76
UFD1-209ENST00000489406 CAMSAP1Q5T5Y3 1602 aa26.05■■□□□ 1.76
UFD1-209ENST00000489406 PLCH2O75038 1416 aa26.03■■□□□ 1.76
UFD1-209ENST00000489406 MYT1LQ9UL68 1186 aa26.02■■□□□ 1.76
UFD1-209ENST00000489406 EFCAB2Q5VUJ9 269 aa25.97■■□□□ 1.75
UFD1-209ENST00000489406 AFAP1Q8N556 730 aa25.97■■□□□ 1.75
UFD1-209ENST00000489406 RANGAP1P46060 587 aaPredicted RBP25.96■■□□□ 1.75
UFD1-209ENST00000489406 ZNF518AQ6AHZ1 1483 aa25.92■■□□□ 1.74
UFD1-209ENST00000489406 DIP2CQ9Y2E4 1556 aa25.92■■□□□ 1.74
UFD1-209ENST00000489406 TOM1O60784 492 aa25.91■■□□□ 1.74
UFD1-209ENST00000489406 PKD2Q13563 968 aa25.89■■□□□ 1.74
UFD1-209ENST00000489406 REREQ9P2R6 1566 aa25.88■■□□□ 1.73
UFD1-209ENST00000489406 KDM5CP41229 1560 aa25.87■■□□□ 1.73
UFD1-209ENST00000489406 AGLP35573 1532 aa25.86■■□□□ 1.73
UFD1-209ENST00000489406 PPP6R1Q9UPN7 881 aa25.85■■□□□ 1.73
UFD1-209ENST00000489406 CNTLNQ9NXG0 1405 aa25.85■■□□□ 1.73
UFD1-209ENST00000489406 CDK13Q14004 1512 aaKnown RBP25.84■■□□□ 1.73
UFD1-209ENST00000489406 NPATQ14207 1427 aa25.84■■□□□ 1.73
UFD1-209ENST00000489406 ABCA6Q8N139 1617 aa25.84■■□□□ 1.73
UFD1-209ENST00000489406 MYO5CQ9NQX4 1742 aa25.82■■□□□ 1.72
UFD1-209ENST00000489406 PLA2R1Q13018 1463 aa25.81■■□□□ 1.72
UFD1-209ENST00000489406 TCOF1Q13428 1488 aaKnown RBP25.8■■□□□ 1.72
UFD1-209ENST00000489406 SENP3Q9H4L4 574 aaPredicted RBP25.79■■□□□ 1.72
UFD1-209ENST00000489406 ZMYM3Q14202 1370 aa25.78■■□□□ 1.72
UFD1-209ENST00000489406 MLH3Q9UHC1 1453 aa25.77■■□□□ 1.72
UFD1-209ENST00000489406 ARHGAP5Q13017 1502 aa25.75■■□□□ 1.71
UFD1-209ENST00000489406 RGS17Q9UGC6 210 aaPredicted RBP25.74■■□□□ 1.71
UFD1-209ENST00000489406 SUPT6HQ7KZ85 1726 aaKnown RBP25.74■■□□□ 1.71
UFD1-209ENST00000489406 MROH2AA6NES4 1674 aa25.71■■□□□ 1.71
UFD1-209ENST00000489406 ZNF142P52746 1687 aaPredicted RBP25.71■■□□□ 1.71
UFD1-209ENST00000489406 MYO3AQ8NEV4 1616 aa25.7■■□□□ 1.71
UFD1-209ENST00000489406 CEP170BQ9Y4F5 1589 aaPredicted RBP25.7■■□□□ 1.71
UFD1-209ENST00000489406 CPS1P31327 1500 aa25.7■■□□□ 1.7
UFD1-209ENST00000489406 PTPRKQ15262 1439 aa25.67■■□□□ 1.7
UFD1-209ENST00000489406 ATP1B4Q9UN42 357 aaPredicted RBP25.67■■□□□ 1.7
UFD1-209ENST00000489406 KIF14Q15058 1648 aa25.66■■□□□ 1.7
UFD1-209ENST00000489406 SHANK2Q9UPX8 1470 aa25.66■■□□□ 1.7
UFD1-209ENST00000489406 ALKQ9UM73 1620 aa25.64■■□□□ 1.7
UFD1-209ENST00000489406 CSRNP3Q8WYN3 585 aa25.63■■□□□ 1.69
UFD1-209ENST00000489406 CDK11AQ9UQ88 783 aaPredicted RBP25.61■■□□□ 1.69
UFD1-209ENST00000489406 KIDINS220Q9ULH0 1771 aa25.61■■□□□ 1.69
UFD1-209ENST00000489406 CLTCQ00610 1675 aaKnown RBP25.58■■□□□ 1.69
UFD1-209ENST00000489406 POTEAQ6S8J7 498 aa25.55■■□□□ 1.68
UFD1-209ENST00000489406 ABCC1P33527 1531 aa25.54■■□□□ 1.68
UFD1-209ENST00000489406 CDC42BPBQ9Y5S2 1711 aa25.54■■□□□ 1.68
UFD1-209ENST00000489406 TROQ12816 1431 aaPredicted RBP25.53■■□□□ 1.68
UFD1-209ENST00000489406 A2ML1A8K2U0 1454 aa25.53■■□□□ 1.68
UFD1-209ENST00000489406 NEURL4Q96JN8 1562 aa25.52■■□□□ 1.68
UFD1-209ENST00000489406 DNMT1P26358 1616 aaKnown RBP25.52■■□□□ 1.68
UFD1-209ENST00000489406 ITSN2Q9NZM3 1697 aa25.52■■□□□ 1.68
UFD1-209ENST00000489406 POLR1AO95602 1720 aaPredicted RBP25.49■■□□□ 1.67
UFD1-209ENST00000489406 VWDEQ8N2E2 1590 aa25.49■■□□□ 1.67
UFD1-209ENST00000489406 GGT6Q6P531 493 aa25.49■■□□□ 1.67
UFD1-209ENST00000489406 CLIP1P30622 1438 aa25.48■■□□□ 1.67
UFD1-209ENST00000489406 ANKLE2Q86XL3 938 aa25.43■■□□□ 1.66
UFD1-209ENST00000489406 PREX2Q70Z35 1606 aa25.42■■□□□ 1.66
UFD1-209ENST00000489406 SAMD9LQ8IVG5 1584 aa25.42■■□□□ 1.66
UFD1-209ENST00000489406 SPAG9O60271 1321 aaKnown RBP25.41■■□□□ 1.66
UFD1-209ENST00000489406 SETD1AO15047 1707 aaKnown RBP25.39■■□□□ 1.65
UFD1-209ENST00000489406 LRRC7Q96NW7 1537 aa25.38■■□□□ 1.65
UFD1-209ENST00000489406 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.38■■□□□ 1.65
UFD1-209ENST00000489406 FMN1Q68DA7 1419 aa25.37■■□□□ 1.65
UFD1-209ENST00000489406 ZNF777Q9ULD5 760 aaPredicted RBP25.37■■□□□ 1.65
UFD1-209ENST00000489406 NPHP4O75161 1426 aaPredicted RBP25.36■■□□□ 1.65
UFD1-209ENST00000489406 A2MP01023 1474 aa25.35■■□□□ 1.65
UFD1-209ENST00000489406 RNF17Q9BXT8 1623 aaKnown RBP25.35■■□□□ 1.65
UFD1-209ENST00000489406 FBXO31Q5XUX0 539 aaPredicted RBP25.34■■□□□ 1.65
UFD1-209ENST00000489406 PLXNC1O60486 1568 aa25.34■■□□□ 1.65
UFD1-209ENST00000489406 TNRQ92752 1358 aa25.33■■□□□ 1.65
UFD1-209ENST00000489406 HNRNPMP52272 730 aaKnown RBP eCLIP25.33■■□□□ 1.65
UFD1-209ENST00000489406 STRCP1A6NGW2 1772 aa25.31■■□□□ 1.64
UFD1-209ENST00000489406 THEMISQ8N1K5 641 aaPredicted RBP25.31■■□□□ 1.64
UFD1-209ENST00000489406 MED14O60244 1454 aa25.3■■□□□ 1.64
UFD1-209ENST00000489406 ATP7AQ04656 1500 aa25.3■■□□□ 1.64
UFD1-209ENST00000489406 SYCP2Q9BX26 1530 aa25.28■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms