RNA–Protein interactions for RNA: ENST00000487384.5

HOXA9-204, Transcript of homeobox A9, humanhuman

TSL 3

Gene HOXA9, Length 693 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-204ENST00000487384 CDK13Q14004 1512 aaKnown RBP14.12□□□□□ -0.15
HOXA9-204ENST00000487384 SCAPERQ9BY12 1400 aa14.09□□□□□ -0.15
HOXA9-204ENST00000487384 CERKQ8TCT0 537 aa14.09□□□□□ -0.15
HOXA9-204ENST00000487384 MAGI2Q86UL8 1455 aa14.08□□□□□ -0.16
HOXA9-204ENST00000487384 EHMT2Q96KQ7 1210 aa14.08□□□□□ -0.16
HOXA9-204ENST00000487384 ATP1B4Q9UN42 357 aaPredicted RBP14.08□□□□□ -0.16
HOXA9-204ENST00000487384 MYO5CQ9NQX4 1742 aa14.07□□□□□ -0.16
HOXA9-204ENST00000487384 EEA1Q15075 1411 aa14.07□□□□□ -0.16
HOXA9-204ENST00000487384 CEBPAP49715 358 aaPredicted RBP14.06□□□□□ -0.16
HOXA9-204ENST00000487384 PREX1Q8TCU6 1659 aa14.06□□□□□ -0.16
HOXA9-204ENST00000487384 PLCH2O75038 1416 aa14.06□□□□□ -0.16
HOXA9-204ENST00000487384 ATP10AO60312 1499 aa14.04□□□□□ -0.16
HOXA9-204ENST00000487384 ARHGEF12Q9NZN5 1544 aa14.04□□□□□ -0.16
HOXA9-204ENST00000487384 C9orf84Q5VXU9 1444 aa14.03□□□□□ -0.16
HOXA9-204ENST00000487384 SETD1BQ9UPS6 1966 aaKnown RBP14.02□□□□□ -0.16
HOXA9-204ENST00000487384 STRCQ7RTU9 1775 aa14.02□□□□□ -0.16
HOXA9-204ENST00000487384 KIF14Q15058 1648 aa14.02□□□□□ -0.16
HOXA9-204ENST00000487384 EFCAB2Q5VUJ9 269 aa14.01□□□□□ -0.17
HOXA9-204ENST00000487384 MYT1LQ9UL68 1186 aa14□□□□□ -0.17
HOXA9-204ENST00000487384 AFAP1Q8N556 730 aa13.99□□□□□ -0.17
HOXA9-204ENST00000487384 UBTFP17480 764 aaKnown RBP13.98□□□□□ -0.17
HOXA9-204ENST00000487384 ARHGAP5Q13017 1502 aa13.98□□□□□ -0.17
HOXA9-204ENST00000487384 LRRIQ1Q96JM4 1722 aa13.98□□□□□ -0.17
HOXA9-204ENST00000487384 ZNF518AQ6AHZ1 1483 aa13.97□□□□□ -0.17
HOXA9-204ENST00000487384 DISP3Q9P2K9 1392 aa13.96□□□□□ -0.17
HOXA9-204ENST00000487384 CDK11AQ9UQ88 783 aaPredicted RBP13.96□□□□□ -0.17
HOXA9-204ENST00000487384 FMN1Q68DA7 1419 aa13.96□□□□□ -0.18
HOXA9-204ENST00000487384 UHRF1BP1Q6BDS2 1440 aa13.96□□□□□ -0.18
HOXA9-204ENST00000487384 CDC42BPBQ9Y5S2 1711 aa13.95□□□□□ -0.18
HOXA9-204ENST00000487384 C3P01024 1663 aa13.95□□□□□ -0.18
HOXA9-204ENST00000487384 ARHGAP35Q9NRY4 1499 aa13.95□□□□□ -0.18
HOXA9-204ENST00000487384 ILDR2Q71H61 639 aa13.95□□□□□ -0.18
HOXA9-204ENST00000487384 KDM5CP41229 1560 aa13.95□□□□□ -0.18
HOXA9-204ENST00000487384 DIP2CQ9Y2E4 1556 aa13.95□□□□□ -0.18
HOXA9-204ENST00000487384 ABCA6Q8N139 1617 aa13.94□□□□□ -0.18
HOXA9-204ENST00000487384 DMRT2Q9Y5R5 561 aa13.94□□□□□ -0.18
HOXA9-204ENST00000487384 TROQ12816 1431 aaPredicted RBP13.93□□□□□ -0.18
HOXA9-204ENST00000487384 CLIP1P30622 1438 aa13.9□□□□□ -0.18
HOXA9-204ENST00000487384 ESF1Q9H501 851 aaKnown RBP13.9□□□□□ -0.18
HOXA9-204ENST00000487384 ITSN2Q9NZM3 1697 aa13.89□□□□□ -0.19
HOXA9-204ENST00000487384 REREQ9P2R6 1566 aa13.89□□□□□ -0.19
HOXA9-204ENST00000487384 PREX2Q70Z35 1606 aa13.89□□□□□ -0.19
HOXA9-204ENST00000487384 TRAPPC8Q9Y2L5 1435 aa13.89□□□□□ -0.19
HOXA9-204ENST00000487384 MLH3Q9UHC1 1453 aa13.87□□□□□ -0.19
HOXA9-204ENST00000487384 KIDINS220Q9ULH0 1771 aa13.87□□□□□ -0.19
HOXA9-204ENST00000487384 ABCC1P33527 1531 aa13.87□□□□□ -0.19
HOXA9-204ENST00000487384 CDC42BPAQ5VT25 1732 aa13.87□□□□□ -0.19
HOXA9-204ENST00000487384 SOCS7O14512 581 aa13.86□□□□□ -0.19
HOXA9-204ENST00000487384 PTPRTO14522 1441 aa13.86□□□□□ -0.19
HOXA9-204ENST00000487384 SPATA31D1Q6ZQQ2 1576 aa13.86□□□□□ -0.19
HOXA9-204ENST00000487384 AGLP35573 1532 aa13.85□□□□□ -0.19
HOXA9-204ENST00000487384 LTBP4Q8N2S1 1624 aa13.84□□□□□ -0.19
HOXA9-204ENST00000487384 SUPT6HQ7KZ85 1726 aaKnown RBP13.83□□□□□ -0.2
HOXA9-204ENST00000487384 NCOA1Q15788 1441 aa13.82□□□□□ -0.2
HOXA9-204ENST00000487384 ZNF777Q9ULD5 760 aaPredicted RBP13.82□□□□□ -0.2
HOXA9-204ENST00000487384 CAMSAP1Q5T5Y3 1602 aa13.81□□□□□ -0.2
HOXA9-204ENST00000487384 SAMD9LQ8IVG5 1584 aa13.8□□□□□ -0.2
HOXA9-204ENST00000487384 CNTLNQ9NXG0 1405 aa13.8□□□□□ -0.2
HOXA9-204ENST00000487384 CCDC18Q5T9S5 1454 aa13.8□□□□□ -0.2
HOXA9-204ENST00000487384 MROH2AA6NES4 1674 aa13.79□□□□□ -0.2
HOXA9-204ENST00000487384 CLTCQ00610 1675 aaKnown RBP13.79□□□□□ -0.2
HOXA9-204ENST00000487384 CASKIN1Q8WXD9 1431 aa13.79□□□□□ -0.2
HOXA9-204ENST00000487384 FOXD1Q16676 465 aa13.78□□□□□ -0.2
HOXA9-204ENST00000487384 NCKAP5LQ9HCH0 1330 aa13.78□□□□□ -0.2
HOXA9-204ENST00000487384 SYCP2Q9BX26 1530 aa13.78□□□□□ -0.2
HOXA9-204ENST00000487384 HNRNPMP52272 730 aaKnown RBP eCLIP13.77□□□□□ -0.21
HOXA9-204ENST00000487384 ZMYM3Q14202 1370 aa13.77□□□□□ -0.21
HOXA9-204ENST00000487384 IQSEC2Q5JU85 1478 aa13.76□□□□□ -0.21
HOXA9-204ENST00000487384 SPAG9O60271 1321 aaKnown RBP13.76□□□□□ -0.21
HOXA9-204ENST00000487384 ZNF335Q9H4Z2 1342 aaPredicted RBP13.76□□□□□ -0.21
HOXA9-204ENST00000487384 NPATQ14207 1427 aa13.75□□□□□ -0.21
HOXA9-204ENST00000487384 MYO3AQ8NEV4 1616 aa13.75□□□□□ -0.21
HOXA9-204ENST00000487384 UBAP1LF5GYI3 381 aa13.74□□□□□ -0.21
HOXA9-204ENST00000487384 ATP7AQ04656 1500 aa13.74□□□□□ -0.21
HOXA9-204ENST00000487384 ZNF142P52746 1687 aaPredicted RBP13.73□□□□□ -0.21
HOXA9-204ENST00000487384 GPATCH8Q9UKJ3 1502 aaKnown RBP13.73□□□□□ -0.21
HOXA9-204ENST00000487384 GGT6Q6P531 493 aa13.72□□□□□ -0.21
HOXA9-204ENST00000487384 FYCO1Q9BQS8 1478 aa13.72□□□□□ -0.21
HOXA9-204ENST00000487384 INO80Q9ULG1 1556 aaPredicted RBP13.71□□□□□ -0.21
HOXA9-204ENST00000487384 CEP170BQ9Y4F5 1589 aaPredicted RBP13.71□□□□□ -0.21
HOXA9-204ENST00000487384 PLXNC1O60486 1568 aa13.71□□□□□ -0.22
HOXA9-204ENST00000487384 A2MP01023 1474 aa13.7□□□□□ -0.22
HOXA9-204ENST00000487384 CFDP1Q9UEE9 299 aaPredicted RBP13.7□□□□□ -0.22
HOXA9-204ENST00000487384 PTPRKQ15262 1439 aa13.69□□□□□ -0.22
HOXA9-204ENST00000487384 PKD2Q13563 968 aa13.68□□□□□ -0.22
HOXA9-204ENST00000487384 ADGBQ8N7X0 1667 aa13.68□□□□□ -0.22
HOXA9-204ENST00000487384 PLA2R1Q13018 1463 aa13.67□□□□□ -0.22
HOXA9-204ENST00000487384 CCNB3Q8WWL7 1395 aa13.67□□□□□ -0.22
HOXA9-204ENST00000487384 TCOF1Q13428 1488 aaKnown RBP13.67□□□□□ -0.22
HOXA9-204ENST00000487384 SCAF1Q9H7N4 1312 aaKnown RBP13.66□□□□□ -0.22
HOXA9-204ENST00000487384 KIAA1107Q9UPP5 1409 aa13.66□□□□□ -0.22
HOXA9-204ENST00000487384 PPP6R1Q9UPN7 881 aa13.66□□□□□ -0.22
HOXA9-204ENST00000487384 PLEKHH2Q8IVE3 1493 aa13.66□□□□□ -0.22
HOXA9-204ENST00000487384 ZNF644Q9H582 1327 aaPredicted RBP13.64□□□□□ -0.23
HOXA9-204ENST00000487384 DNMT1P26358 1616 aaKnown RBP13.64□□□□□ -0.23
HOXA9-204ENST00000487384 POLR1AO95602 1720 aaPredicted RBP13.64□□□□□ -0.23
HOXA9-204ENST00000487384 MTUS2Q5JR59 1369 aa13.63□□□□□ -0.23
HOXA9-204ENST00000487384 PIP4K2BP78356 416 aa13.63□□□□□ -0.23
HOXA9-204ENST00000487384 A2ML1A8K2U0 1454 aa13.62□□□□□ -0.23
HOXA9-204ENST00000487384 HSPA1LP34931 641 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms