RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 EXOC6Q8TAG9 804 aa14.24□□□□□ -0.13
CCDC171-208ENST00000486641 CHIC2Q9UKJ5 165 aa14.24□□□□□ -0.13
CCDC171-208ENST00000486641 FOXD1Q16676 465 aa14.23□□□□□ -0.13
CCDC171-208ENST00000486641 MPHOSPH9Q99550 1183 aa14.23□□□□□ -0.13
CCDC171-208ENST00000486641 MYOM3Q5VTT5 1437 aa14.23□□□□□ -0.13
CCDC171-208ENST00000486641 SPATA31E1Q6ZUB1 1445 aa14.23□□□□□ -0.13
CCDC171-208ENST00000486641 POLR1AO95602 1720 aaPredicted RBP14.23□□□□□ -0.13
CCDC171-208ENST00000486641 HECW1Q76N89 1606 aa14.22□□□□□ -0.13
CCDC171-208ENST00000486641 DHX29Q7Z478 1369 aaKnown RBP14.22□□□□□ -0.13
CCDC171-208ENST00000486641 EFCAB5A4FU69 1503 aa14.21□□□□□ -0.13
CCDC171-208ENST00000486641 EIF5BO60841 1220 aaKnown RBP14.2□□□□□ -0.14
CCDC171-208ENST00000486641 PNISRQ8TF01 805 aaKnown RBP14.2□□□□□ -0.14
CCDC171-208ENST00000486641 KDM6BO15054 1643 aa14.2□□□□□ -0.14
CCDC171-208ENST00000486641 MS4A1P11836 297 aa14.2□□□□□ -0.14
CCDC171-208ENST00000486641 RRP1P56182 461 aaKnown RBP14.2□□□□□ -0.14
CCDC171-208ENST00000486641 SNAPC4Q5SXM2 1469 aa14.19□□□□□ -0.14
CCDC171-208ENST00000486641 HMGXB3Q12766 1538 aa14.19□□□□□ -0.14
CCDC171-208ENST00000486641 NFKBIBQ15653 356 aa14.18□□□□□ -0.14
CCDC171-208ENST00000486641 FRAT1Q92837 279 aaPredicted RBP14.17□□□□□ -0.14
CCDC171-208ENST00000486641 LRRIQ1Q96JM4 1722 aa14.17□□□□□ -0.14
CCDC171-208ENST00000486641 GCC2Q8IWJ2 1684 aa14.17□□□□□ -0.14
CCDC171-208ENST00000486641 POLR3GLQ9BT43 218 aa14.15□□□□□ -0.14
CCDC171-208ENST00000486641 TMC1Q8TDI8 760 aa14.15□□□□□ -0.14
CCDC171-208ENST00000486641 DDRGK1Q96HY6 314 aa14.14□□□□□ -0.15
CCDC171-208ENST00000486641 SUPT6HQ7KZ85 1726 aaKnown RBP14.14□□□□□ -0.15
CCDC171-208ENST00000486641 RPRD2Q5VT52 1461 aaKnown RBP14.14□□□□□ -0.15
CCDC171-208ENST00000486641 TEX14Q8IWB6 1497 aa14.14□□□□□ -0.15
CCDC171-208ENST00000486641 RCAN3Q9UKA8 241 aa14.13□□□□□ -0.15
CCDC171-208ENST00000486641 ANKRD30BQ9BXX2 1392 aa14.13□□□□□ -0.15
CCDC171-208ENST00000486641 SLC4A3P48751 1232 aa14.13□□□□□ -0.15
CCDC171-208ENST00000486641 PRDM2Q13029 1718 aa14.13□□□□□ -0.15
CCDC171-208ENST00000486641 SKAP1Q86WV1 359 aa14.12□□□□□ -0.15
CCDC171-208ENST00000486641 BCORL1Q5H9F3 1711 aa14.11□□□□□ -0.15
CCDC171-208ENST00000486641 UGGT2Q9NYU1 1516 aa14.1□□□□□ -0.15
CCDC171-208ENST00000486641 CTTNBP2Q8WZ74 1663 aa14.1□□□□□ -0.15
CCDC171-208ENST00000486641 LRPPRCP42704 1394 aaKnown RBP14.1□□□□□ -0.15
CCDC171-208ENST00000486641 MIA2Q96PC5 1412 aa14.09□□□□□ -0.15
CCDC171-208ENST00000486641 TCOF1Q13428 1488 aaKnown RBP14.09□□□□□ -0.15
CCDC171-208ENST00000486641 EHBP1L1Q8N3D4 1523 aa14.08□□□□□ -0.15
CCDC171-208ENST00000486641 GRIN2BQ13224 1484 aa14.08□□□□□ -0.15
CCDC171-208ENST00000486641 ARHGEF11O15085 1522 aa14.08□□□□□ -0.16
CCDC171-208ENST00000486641 RSPH6AQ9H0K4 717 aa14.07□□□□□ -0.16
CCDC171-208ENST00000486641 MAGI3Q5TCQ9 1506 aa14.06□□□□□ -0.16
CCDC171-208ENST00000486641 FAM43AQ8N2R8 423 aa14.06□□□□□ -0.16
CCDC171-208ENST00000486641 USP47Q96K76 1375 aa14.05□□□□□ -0.16
CCDC171-208ENST00000486641 PLIN1O60240 522 aa14.05□□□□□ -0.16
CCDC171-208ENST00000486641 AEBP2Q6ZN18 517 aaPredicted RBP14.05□□□□□ -0.16
CCDC171-208ENST00000486641 DCAF11Q8TEB1 546 aa14.04□□□□□ -0.16
CCDC171-208ENST00000486641 DAXXQ9UER7 740 aaPredicted RBP14.04□□□□□ -0.16
CCDC171-208ENST00000486641 FRAT2O75474 233 aaPredicted RBP14.03□□□□□ -0.16
CCDC171-208ENST00000486641 ARID4BQ4LE39 1312 aaPredicted RBP14.03□□□□□ -0.16
CCDC171-208ENST00000486641 SLC4A1APQ9BWU0 796 aaKnown RBP14.03□□□□□ -0.16
CCDC171-208ENST00000486641 RAD54L2Q9Y4B4 1467 aa14.03□□□□□ -0.16
CCDC171-208ENST00000486641 BRD4O60885 1362 aaPredicted RBP14.02□□□□□ -0.16
CCDC171-208ENST00000486641 CDCA7LQ96GN5 454 aa14.02□□□□□ -0.16
CCDC171-208ENST00000486641 CRBNQ96SW2 442 aa14.02□□□□□ -0.17
CCDC171-208ENST00000486641 MYBBP1AQ9BQG0 1328 aaKnown RBP14.02□□□□□ -0.17
CCDC171-208ENST00000486641 SAMD9Q5K651 1589 aa14.01□□□□□ -0.17
CCDC171-208ENST00000486641 THOC2Q8NI27 1593 aaKnown RBP14.01□□□□□ -0.17
CCDC171-208ENST00000486641 KIF15Q9NS87 1388 aa14.01□□□□□ -0.17
CCDC171-208ENST00000486641 PDE3BQ13370 1112 aa14.01□□□□□ -0.17
CCDC171-208ENST00000486641 ZNF326Q5BKZ1 582 aaKnown RBP14.01□□□□□ -0.17
CCDC171-208ENST00000486641 CADPSQ9ULU8 1353 aa14.01□□□□□ -0.17
CCDC171-208ENST00000486641 CC2D2AQ9P2K1 1620 aa14□□□□□ -0.17
CCDC171-208ENST00000486641 CUL7Q14999 1698 aa14□□□□□ -0.17
CCDC171-208ENST00000486641 ROCK2O75116 1388 aaKnown RBP13.99□□□□□ -0.17
CCDC171-208ENST00000486641 KDM5CP41229 1560 aa13.99□□□□□ -0.17
CCDC171-208ENST00000486641 RALBP1Q15311 655 aa13.98□□□□□ -0.17
CCDC171-208ENST00000486641 ABCA10Q8WWZ4 1543 aa13.98□□□□□ -0.17
CCDC171-208ENST00000486641 MBD5Q9P267 1494 aa13.98□□□□□ -0.17
CCDC171-208ENST00000486641 C8orf34Q49A92 452 aa13.96□□□□□ -0.18
CCDC171-208ENST00000486641 KDM2BQ8NHM5 1336 aa13.95□□□□□ -0.18
CCDC171-208ENST00000486641 KTN1Q86UP2 1357 aaKnown RBP13.95□□□□□ -0.18
CCDC171-208ENST00000486641 FAM161AQ3B820 660 aa13.95□□□□□ -0.18
CCDC171-208ENST00000486641 C20orf194Q5TEA3 1177 aa13.95□□□□□ -0.18
CCDC171-208ENST00000486641 ROCK1Q13464 1354 aa13.94□□□□□ -0.18
CCDC171-208ENST00000486641 PKNOX2Q96KN3 472 aa13.93□□□□□ -0.18
CCDC171-208ENST00000486641 DAPK1P53355 1430 aa13.93□□□□□ -0.18
CCDC171-208ENST00000486641 KIF14Q15058 1648 aa13.93□□□□□ -0.18
CCDC171-208ENST00000486641 RRAGDQ9NQL2 400 aaPredicted RBP13.92□□□□□ -0.18
CCDC171-208ENST00000486641 POLA1P09884 1462 aaPredicted RBP13.92□□□□□ -0.18
CCDC171-208ENST00000486641 NLRP13Q86W25 1043 aa13.91□□□□□ -0.18
CCDC171-208ENST00000486641 PZPP20742 1482 aa13.91□□□□□ -0.18
CCDC171-208ENST00000486641 CENPQQ7L2Z9 268 aaPredicted RBP13.91□□□□□ -0.18
CCDC171-208ENST00000486641 CARD11Q9BXL7 1154 aa13.91□□□□□ -0.18
CCDC171-208ENST00000486641 ABCC5O15440 1437 aa13.91□□□□□ -0.18
CCDC171-208ENST00000486641 ST20-MTHFSA0A0A6YYL1 179 aa13.9□□□□□ -0.18
CCDC171-208ENST00000486641 POGKQ9P215 609 aa13.9□□□□□ -0.18
CCDC171-208ENST00000486641 FANCD2Q9BXW9 1451 aa13.88□□□□□ -0.19
CCDC171-208ENST00000486641 ZNF644Q9H582 1327 aaPredicted RBP13.88□□□□□ -0.19
CCDC171-208ENST00000486641 DNMBPQ6XZF7 1577 aa13.88□□□□□ -0.19
CCDC171-208ENST00000486641 ARID3CA6NKF2 412 aa13.87□□□□□ -0.19
CCDC171-208ENST00000486641 EPRSP07814 1512 aaKnown RBP13.87□□□□□ -0.19
CCDC171-208ENST00000486641 PARD3Q8TEW0 1356 aa13.87□□□□□ -0.19
CCDC171-208ENST00000486641 E9PCH4 1651 aa13.87□□□□□ -0.19
CCDC171-208ENST00000486641 RALGAPBQ86X10 1494 aa13.87□□□□□ -0.19
CCDC171-208ENST00000486641 DNMT1P26358 1616 aaKnown RBP13.86□□□□□ -0.19
CCDC171-208ENST00000486641 KIAA1107Q9UPP5 1409 aa13.86□□□□□ -0.19
CCDC171-208ENST00000486641 CDK13Q14004 1512 aaKnown RBP13.86□□□□□ -0.19
CCDC171-208ENST00000486641 TOPBP1Q92547 1522 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms