RNA–Protein interactions for RNA: ENST00000481242.5

GARNL3-216, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 2

Gene GARNL3, Length 4,816 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-216ENST00000481242 NEUROD2Q15784 382 aa12.23□□□□□ -0.45
GARNL3-216ENST00000481242 PTPRGP23470 1445 aa12.23□□□□□ -0.45
GARNL3-216ENST00000481242 CDK11BP21127 795 aaKnown RBP12.23□□□□□ -0.45
GARNL3-216ENST00000481242 LAS1LQ9Y4W2 734 aaKnown RBP12.23□□□□□ -0.45
GARNL3-216ENST00000481242 GOLGA6L22H0YM25 854 aa12.22□□□□□ -0.45
GARNL3-216ENST00000481242 MPHOSPH9Q99550 1183 aa12.22□□□□□ -0.45
GARNL3-216ENST00000481242 WASHC2CQ9Y4E1 1318 aa12.22□□□□□ -0.45
GARNL3-216ENST00000481242 RTF1Q92541 710 aaKnown RBP12.21□□□□□ -0.45
GARNL3-216ENST00000481242 WIZO95785 1651 aa12.21□□□□□ -0.45
GARNL3-216ENST00000481242 CC2D1BQ5T0F9 858 aaKnown RBP12.2□□□□□ -0.46
GARNL3-216ENST00000481242 CFAP44Q96MT7 982 aa12.2□□□□□ -0.46
GARNL3-216ENST00000481242 TNNT2P45379 298 aaPredicted RBP12.2□□□□□ -0.46
GARNL3-216ENST00000481242 CCER2I3L3R5 266 aa12.2□□□□□ -0.46
GARNL3-216ENST00000481242 TERF2IPQ9NYB0 399 aa12.19□□□□□ -0.46
GARNL3-216ENST00000481242 KANK4Q5T7N3 995 aaPredicted RBP12.19□□□□□ -0.46
GARNL3-216ENST00000481242 KTN1Q86UP2 1357 aaKnown RBP12.18□□□□□ -0.46
GARNL3-216ENST00000481242 STK26Q9P289 416 aa12.18□□□□□ -0.46
GARNL3-216ENST00000481242 FHOD3Q2V2M9 1422 aa12.17□□□□□ -0.46
GARNL3-216ENST00000481242 ROCK2O75116 1388 aaKnown RBP12.17□□□□□ -0.46
GARNL3-216ENST00000481242 NCAPD3P42695 1498 aa12.17□□□□□ -0.46
GARNL3-216ENST00000481242 OS9Q13438 667 aaPredicted RBP12.17□□□□□ -0.46
GARNL3-216ENST00000481242 UACAQ9BZF9 1416 aa12.16□□□□□ -0.46
GARNL3-216ENST00000481242 HNRNPMP52272 730 aaKnown RBP eCLIP12.16□□□□□ -0.46
GARNL3-216ENST00000481242 RALBP1Q15311 655 aa12.16□□□□□ -0.46
GARNL3-216ENST00000481242 HDAC5Q9UQL6 1122 aa12.16□□□□□ -0.46
GARNL3-216ENST00000481242 GOLGA2Q08379 1002 aa12.15□□□□□ -0.46
GARNL3-216ENST00000481242 SAFB2Q14151 953 aaKnown RBP eCLIP12.15□□□□□ -0.46
GARNL3-216ENST00000481242 IPO8O15397 1037 aaKnown RBP12.15□□□□□ -0.46
GARNL3-216ENST00000481242 ZRSR1Q15695 479 aaKnown RBP12.14□□□□□ -0.47
GARNL3-216ENST00000481242 FRAT1Q92837 279 aaPredicted RBP12.14□□□□□ -0.47
GARNL3-216ENST00000481242 RAB3GAP2Q9H2M9 1393 aa12.14□□□□□ -0.47
GARNL3-216ENST00000481242 PPP4R2Q9NY27 417 aa12.14□□□□□ -0.47
GARNL3-216ENST00000481242 HSPA5P11021 654 aaKnown RBP12.13□□□□□ -0.47
GARNL3-216ENST00000481242 CSB-PGBD3P0DP91 1061 aa12.13□□□□□ -0.47
GARNL3-216ENST00000481242 GAPVD1Q14C86 1478 aa12.13□□□□□ -0.47
GARNL3-216ENST00000481242 PAK3O75914 559 aaPredicted RBP12.12□□□□□ -0.47
GARNL3-216ENST00000481242 IRX6P78412 446 aaPredicted RBP12.12□□□□□ -0.47
GARNL3-216ENST00000481242 VGFO15240 615 aaPredicted RBP12.12□□□□□ -0.47
GARNL3-216ENST00000481242 CYB5RLQ6IPT4 315 aa12.12□□□□□ -0.47
GARNL3-216ENST00000481242 SUPT16HQ9Y5B9 1047 aaKnown RBP12.12□□□□□ -0.47
GARNL3-216ENST00000481242 STAC3Q96MF2 364 aa12.11□□□□□ -0.47
GARNL3-216ENST00000481242 SOX12O15370 315 aa12.11□□□□□ -0.47
GARNL3-216ENST00000481242 NGDNQ8NEJ9 315 aaKnown RBP12.1□□□□□ -0.47
GARNL3-216ENST00000481242 LMOD3Q0VAK6 560 aa12.09□□□□□ -0.47
GARNL3-216ENST00000481242 FGD1P98174 961 aa12.08□□□□□ -0.47
GARNL3-216ENST00000481242 U2AF1L5P0DN76 240 aaPredicted RBP12.08□□□□□ -0.48
GARNL3-216ENST00000481242 U2AF1Q01081 240 aaKnown RBP eCLIP12.08□□□□□ -0.48
GARNL3-216ENST00000481242 KCNJ4P48050 445 aa12.08□□□□□ -0.48
GARNL3-216ENST00000481242 CCDC144AA2RUR9 1427 aa12.08□□□□□ -0.48
GARNL3-216ENST00000481242 FGD5Q6ZNL6 1462 aa12.07□□□□□ -0.48
GARNL3-216ENST00000481242 FOXD1Q16676 465 aa12.06□□□□□ -0.48
GARNL3-216ENST00000481242 TMX4Q9H1E5 349 aaPredicted RBP12.06□□□□□ -0.48
GARNL3-216ENST00000481242 IGF1RP08069 1367 aa12.05□□□□□ -0.48
GARNL3-216ENST00000481242 MCCP23508 829 aa12.05□□□□□ -0.48
GARNL3-216ENST00000481242 NBR1Q14596 966 aa12.05□□□□□ -0.48
GARNL3-216ENST00000481242 STK31Q9BXU1 1019 aa12.05□□□□□ -0.48
GARNL3-216ENST00000481242 PHLDB1Q86UU1 1377 aa12.05□□□□□ -0.48
GARNL3-216ENST00000481242 L3MBTL2Q969R5 705 aa12.04□□□□□ -0.48
GARNL3-216ENST00000481242 PHF23Q9BUL5 403 aaPredicted RBP12.04□□□□□ -0.48
GARNL3-216ENST00000481242 DEKP35659 375 aaKnown RBP12.04□□□□□ -0.48
GARNL3-216ENST00000481242 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.04□□□□□ -0.48
GARNL3-216ENST00000481242 MYOM3Q5VTT5 1437 aa12.03□□□□□ -0.48
GARNL3-216ENST00000481242 NLRP13Q86W25 1043 aa12.03□□□□□ -0.48
GARNL3-216ENST00000481242 AMPHP49418 695 aa12.02□□□□□ -0.49
GARNL3-216ENST00000481242 GRIN2BQ13224 1484 aa12.01□□□□□ -0.49
GARNL3-216ENST00000481242 RGS3P49796 1198 aa12.01□□□□□ -0.49
GARNL3-216ENST00000481242 CCDC9Q9Y3X0 531 aaKnown RBP12□□□□□ -0.49
GARNL3-216ENST00000481242 PDE3BQ13370 1112 aa12□□□□□ -0.49
GARNL3-216ENST00000481242 EVC2Q86UK5 1308 aa12□□□□□ -0.49
GARNL3-216ENST00000481242 FAM69CQ0P6D2 419 aa12□□□□□ -0.49
GARNL3-216ENST00000481242 TRIM44Q96DX7 344 aaPredicted RBP11.99□□□□□ -0.49
GARNL3-216ENST00000481242 HMMRO75330 724 aa11.98□□□□□ -0.49
GARNL3-216ENST00000481242 RWDD1Q9H446 243 aaPredicted RBP11.98□□□□□ -0.49
GARNL3-216ENST00000481242 KIAA1211Q6ZU35 1233 aa11.97□□□□□ -0.49
GARNL3-216ENST00000481242 TRAK1Q9UPV9 953 aa11.97□□□□□ -0.49
GARNL3-216ENST00000481242 HSP90AB1P08238 724 aaKnown RBP11.96□□□□□ -0.49
GARNL3-216ENST00000481242 NGEFQ8N5V2 710 aa11.96□□□□□ -0.49
GARNL3-216ENST00000481242 NRDCO43847 1150 aa11.96□□□□□ -0.49
GARNL3-216ENST00000481242 CGNL1Q0VF96 1302 aa11.96□□□□□ -0.5
GARNL3-216ENST00000481242 COG3Q96JB2 828 aa11.95□□□□□ -0.5
GARNL3-216ENST00000481242 CUX1P39880 1505 aa11.95□□□□□ -0.5
GARNL3-216ENST00000481242 SENP3-EIF4A1A0A087X0R7 540 aa11.95□□□□□ -0.5
GARNL3-216ENST00000481242 GPATCH3Q96I76 525 aa11.95□□□□□ -0.5
GARNL3-216ENST00000481242 RAD54L2Q9Y4B4 1467 aa11.95□□□□□ -0.5
GARNL3-216ENST00000481242 GOLGA6L4A6NEF3 574 aa11.94□□□□□ -0.5
GARNL3-216ENST00000481242 KIF15Q9NS87 1388 aa11.94□□□□□ -0.5
GARNL3-216ENST00000481242 GOLGA6L6A8MZA4 724 aa11.94□□□□□ -0.5
GARNL3-216ENST00000481242 CFTRP13569 1480 aa11.94□□□□□ -0.5
GARNL3-216ENST00000481242 HSCBQ8IWL3 235 aa11.94□□□□□ -0.5
GARNL3-216ENST00000481242 RSPH6AQ9H0K4 717 aa11.94□□□□□ -0.5
GARNL3-216ENST00000481242 RCAN3Q9UKA8 241 aa11.94□□□□□ -0.5
GARNL3-216ENST00000481242 IFT140Q96RY7 1462 aa11.94□□□□□ -0.5
GARNL3-216ENST00000481242 DHX57Q6P158 1386 aaKnown RBP11.94□□□□□ -0.5
GARNL3-216ENST00000481242 MRC2Q9UBG0 1479 aa11.93□□□□□ -0.5
GARNL3-216ENST00000481242 PMFBP1Q8TBY8 1022 aa11.93□□□□□ -0.5
GARNL3-216ENST00000481242 NAP1L2Q9ULW6 460 aaPredicted RBP11.93□□□□□ -0.5
GARNL3-216ENST00000481242 PTMAP06454 111 aaKnown RBP11.92□□□□□ -0.5
GARNL3-216ENST00000481242 ZNF330Q9Y3S2 320 aaPredicted RBP11.92□□□□□ -0.5
GARNL3-216ENST00000481242 TAF7LQ5H9L4 462 aa11.92□□□□□ -0.5
GARNL3-216ENST00000481242 AQRO60306 1485 aaKnown RBP eCLIP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms