RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.78■□□□□ 0.44
USP42-206ENST00000479544 RIMBP3CA6NJZ7 1639 aa17.77■□□□□ 0.44
USP42-206ENST00000479544 RIMBP3BA6NNM3 1639 aa17.77■□□□□ 0.44
USP42-206ENST00000479544 RIMBP3Q9UFD9 1639 aa17.77■□□□□ 0.44
USP42-206ENST00000479544 SPRYD3Q8NCJ5 442 aa17.77■□□□□ 0.43
USP42-206ENST00000479544 L3MBTL2Q969R5 705 aa17.77■□□□□ 0.43
USP42-206ENST00000479544 NAP1L5Q96NT1 182 aaPredicted RBP17.77■□□□□ 0.43
USP42-206ENST00000479544 ERICH6BQ5W0A0 696 aa17.75■□□□□ 0.43
USP42-206ENST00000479544 SYNJ2O15056 1496 aa17.74■□□□□ 0.43
USP42-206ENST00000479544 FHAD1B1AJZ9 1412 aa17.74■□□□□ 0.43
USP42-206ENST00000479544 NEUROD2Q15784 382 aa17.74■□□□□ 0.43
USP42-206ENST00000479544 PRDM2Q13029 1718 aa17.73■□□□□ 0.43
USP42-206ENST00000479544 SENP3Q9H4L4 574 aaPredicted RBP17.73■□□□□ 0.43
USP42-206ENST00000479544 PRKRIP1Q9H875 184 aaPredicted RBP17.72■□□□□ 0.43
USP42-206ENST00000479544 CCDC184Q52MB2 194 aa17.71■□□□□ 0.43
USP42-206ENST00000479544 NUDCQ9Y266 331 aa17.71■□□□□ 0.43
USP42-206ENST00000479544 PLIN1O60240 522 aa17.71■□□□□ 0.43
USP42-206ENST00000479544 SLKQ9H2G2 1235 aaPredicted RBP17.71■□□□□ 0.43
USP42-206ENST00000479544 RCAN3Q9UKA8 241 aa17.7■□□□□ 0.42
USP42-206ENST00000479544 EXOC6Q8TAG9 804 aa17.69■□□□□ 0.42
USP42-206ENST00000479544 TSPY4P0CV99 314 aa17.68■□□□□ 0.42
USP42-206ENST00000479544 TSPY10P0CW01 314 aa17.68■□□□□ 0.42
USP42-206ENST00000479544 PRKCSHP14314 528 aaPredicted RBP17.67■□□□□ 0.42
USP42-206ENST00000479544 GZF1Q9H116 711 aaPredicted RBP17.67■□□□□ 0.42
USP42-206ENST00000479544 ANP32BQ92688 251 aaKnown RBP17.67■□□□□ 0.42
USP42-206ENST00000479544 FRAT1Q92837 279 aaPredicted RBP17.67■□□□□ 0.42
USP42-206ENST00000479544 PDE4AP27815 886 aa17.66■□□□□ 0.42
USP42-206ENST00000479544 BECN1Q14457 450 aa17.65■□□□□ 0.42
USP42-206ENST00000479544 JPH4Q96JJ6 628 aa17.65■□□□□ 0.42
USP42-206ENST00000479544 MPHOSPH9Q99550 1183 aa17.65■□□□□ 0.42
USP42-206ENST00000479544 CHGAP10645 457 aaKnown RBP17.64■□□□□ 0.42
USP42-206ENST00000479544 TCERG1O14776 1098 aaKnown RBP17.64■□□□□ 0.41
USP42-206ENST00000479544 ARAP1Q96P48 1450 aa17.63■□□□□ 0.41
USP42-206ENST00000479544 DCAF11Q8TEB1 546 aa17.63■□□□□ 0.41
USP42-206ENST00000479544 CFDP1Q9UEE9 299 aaPredicted RBP17.63■□□□□ 0.41
USP42-206ENST00000479544 WDR97A6NE52 1622 aa17.63■□□□□ 0.41
USP42-206ENST00000479544 ARHGAP35Q9NRY4 1499 aa17.62■□□□□ 0.41
USP42-206ENST00000479544 TRIM44Q96DX7 344 aaPredicted RBP17.62■□□□□ 0.41
USP42-206ENST00000479544 FHOD3Q2V2M9 1422 aa17.61■□□□□ 0.41
USP42-206ENST00000479544 KIF21BO75037 1637 aa17.6■□□□□ 0.41
USP42-206ENST00000479544 FAM69CQ0P6D2 419 aa17.6■□□□□ 0.41
USP42-206ENST00000479544 TNNT2P45379 298 aaPredicted RBP17.59■□□□□ 0.41
USP42-206ENST00000479544 BRPF3Q9ULD4 1205 aa17.59■□□□□ 0.41
USP42-206ENST00000479544 CUX1P39880 1505 aa17.59■□□□□ 0.41
USP42-206ENST00000479544 ZBED9Q6R2W3 1325 aa17.58■□□□□ 0.41
USP42-206ENST00000479544 WASHC2AQ641Q2 1341 aa17.58■□□□□ 0.4
USP42-206ENST00000479544 CHD1O14646 1710 aa17.57■□□□□ 0.4
USP42-206ENST00000479544 TARBP1Q13395 1621 aaKnown RBP17.57■□□□□ 0.4
USP42-206ENST00000479544 SLC24A1O60721 1099 aa17.57■□□□□ 0.4
USP42-206ENST00000479544 ABCA10Q8WWZ4 1543 aa17.55■□□□□ 0.4
USP42-206ENST00000479544 NCLP19338 710 aaKnown RBP17.55■□□□□ 0.4
USP42-206ENST00000479544 KNSTRNQ9Y448 316 aa17.55■□□□□ 0.4
USP42-206ENST00000479544 TPRNQ4KMQ1 711 aa17.55■□□□□ 0.4
USP42-206ENST00000479544 GSE1Q14687 1217 aa17.54■□□□□ 0.4
USP42-206ENST00000479544 PKD2Q13563 968 aa17.53■□□□□ 0.4
USP42-206ENST00000479544 ARID3AQ99856 593 aa17.53■□□□□ 0.4
USP42-206ENST00000479544 PLEKHD1A6NEE1 506 aa17.52■□□□□ 0.4
USP42-206ENST00000479544 GRIN2AQ12879 1464 aa17.51■□□□□ 0.39
USP42-206ENST00000479544 CARMIL2Q6F5E8 1435 aa17.51■□□□□ 0.39
USP42-206ENST00000479544 IGF1RP08069 1367 aa17.51■□□□□ 0.39
USP42-206ENST00000479544 PRG4Q92954 1404 aaPredicted RBP17.51■□□□□ 0.39
USP42-206ENST00000479544 SKAP1Q86WV1 359 aa17.5■□□□□ 0.39
USP42-206ENST00000479544 PHLDB1Q86UU1 1377 aa17.5■□□□□ 0.39
USP42-206ENST00000479544 AKNAQ7Z591 1439 aa17.48■□□□□ 0.39
USP42-206ENST00000479544 RRP1P56182 461 aaKnown RBP17.48■□□□□ 0.39
USP42-206ENST00000479544 ZBTB7CA1YPR0 619 aa17.48■□□□□ 0.39
USP42-206ENST00000479544 CRBNQ96SW2 442 aa17.47■□□□□ 0.39
USP42-206ENST00000479544 PNNQ9H307 717 aaKnown RBP17.45■□□□□ 0.38
USP42-206ENST00000479544 ST20-MTHFSA0A0A6YYL1 179 aa17.45■□□□□ 0.38
USP42-206ENST00000479544 FMN1Q68DA7 1419 aa17.45■□□□□ 0.38
USP42-206ENST00000479544 NFKBIBQ15653 356 aa17.44■□□□□ 0.38
USP42-206ENST00000479544 USP35Q9P2H5 1018 aa17.44■□□□□ 0.38
USP42-206ENST00000479544 CCDC146Q8IYE0 955 aa17.43■□□□□ 0.38
USP42-206ENST00000479544 KIF7Q2M1P5 1343 aa17.42■□□□□ 0.38
USP42-206ENST00000479544 CDCA7LQ96GN5 454 aa17.42■□□□□ 0.38
USP42-206ENST00000479544 FTSJ3Q8IY81 847 aaKnown RBP17.41■□□□□ 0.38
USP42-206ENST00000479544 CLUAP1Q96AJ1 413 aa17.41■□□□□ 0.38
USP42-206ENST00000479544 PTPRGP23470 1445 aa17.41■□□□□ 0.38
USP42-206ENST00000479544 VSIG10Q8N0Z9 540 aa17.41■□□□□ 0.38
USP42-206ENST00000479544 CCDC7Q96M83 1385 aa17.37■□□□□ 0.37
USP42-206ENST00000479544 NLRP13Q86W25 1043 aa17.37■□□□□ 0.37
USP42-206ENST00000479544 CLASP1Q7Z460 1538 aa17.37■□□□□ 0.37
USP42-206ENST00000479544 RRBP1Q9P2E9 1410 aaKnown RBP17.36■□□□□ 0.37
USP42-206ENST00000479544 FRAT2O75474 233 aaPredicted RBP17.36■□□□□ 0.37
USP42-206ENST00000479544 KTN1Q86UP2 1357 aaKnown RBP17.36■□□□□ 0.37
USP42-206ENST00000479544 L1TD1Q5T7N2 865 aaKnown RBP17.36■□□□□ 0.37
USP42-206ENST00000479544 CCDC18Q5T9S5 1454 aa17.36■□□□□ 0.37
USP42-206ENST00000479544 C11orf95C9JLR9 678 aaPredicted RBP17.36■□□□□ 0.37
USP42-206ENST00000479544 ERICH3Q5RHP9 1530 aa17.36■□□□□ 0.37
USP42-206ENST00000479544 PRXQ9BXM0 1461 aa17.35■□□□□ 0.37
USP42-206ENST00000479544 RALBP1Q15311 655 aa17.35■□□□□ 0.37
USP42-206ENST00000479544 FOXD4L1Q9NU39 408 aa17.35■□□□□ 0.37
USP42-206ENST00000479544 NUP160Q12769 1436 aa17.34■□□□□ 0.37
USP42-206ENST00000479544 HSP90AB1P08238 724 aaKnown RBP17.34■□□□□ 0.37
USP42-206ENST00000479544 DNTTIP2Q5QJE6 756 aaKnown RBP17.33■□□□□ 0.36
USP42-206ENST00000479544 BCL2L13Q9BXK5 485 aa17.33■□□□□ 0.36
USP42-206ENST00000479544 GOLGA6L22H0YM25 854 aa17.32■□□□□ 0.36
USP42-206ENST00000479544 MFAP1P55081 439 aaKnown RBP17.32■□□□□ 0.36
USP42-206ENST00000479544 LRRC9Q6ZRR7 1453 aa17.32■□□□□ 0.36
USP42-206ENST00000479544 FAM161AQ3B820 660 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms