RNA–Protein interactions for RNA: ENST00000479107.1

HLA-DPA1-247, Transcript of major histocompatibility complex, class II, DP alpha 1, humanhuman

Gene HLA-DPA1, Length 5,025 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1-247ENST00000479107 KIAA0586Q9BVV6 1533 aa11.47□□□□□ -0.57
HLA-DPA1-247ENST00000479107 DISP3Q9P2K9 1392 aa11.47□□□□□ -0.57
HLA-DPA1-247ENST00000479107 RIMBP3CA6NJZ7 1639 aa11.47□□□□□ -0.57
HLA-DPA1-247ENST00000479107 RIMBP3BA6NNM3 1639 aa11.47□□□□□ -0.57
HLA-DPA1-247ENST00000479107 RIMBP3Q9UFD9 1639 aa11.47□□□□□ -0.57
HLA-DPA1-247ENST00000479107 NEFMP07197 916 aa11.47□□□□□ -0.57
HLA-DPA1-247ENST00000479107 TMC1Q8TDI8 760 aa11.47□□□□□ -0.57
HLA-DPA1-247ENST00000479107 SPAG9O60271 1321 aaKnown RBP11.46□□□□□ -0.57
HLA-DPA1-247ENST00000479107 RAPGEF3O95398 923 aa11.46□□□□□ -0.58
HLA-DPA1-247ENST00000479107 ABCA10Q8WWZ4 1543 aa11.46□□□□□ -0.58
HLA-DPA1-247ENST00000479107 TOM1O60784 492 aa11.46□□□□□ -0.58
HLA-DPA1-247ENST00000479107 ERICH6BQ5W0A0 696 aa11.46□□□□□ -0.58
HLA-DPA1-247ENST00000479107 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.44□□□□□ -0.58
HLA-DPA1-247ENST00000479107 HIRIP3Q9BW71 556 aaPredicted RBP11.43□□□□□ -0.58
HLA-DPA1-247ENST00000479107 IGF1RP08069 1367 aa11.43□□□□□ -0.58
HLA-DPA1-247ENST00000479107 CCNB3Q8WWL7 1395 aa11.42□□□□□ -0.58
HLA-DPA1-247ENST00000479107 HSP90AA1P07900 732 aaKnown RBP11.42□□□□□ -0.58
HLA-DPA1-247ENST00000479107 RTN4Q9NQC3 1192 aaKnown RBP11.42□□□□□ -0.58
HLA-DPA1-247ENST00000479107 KANK1Q14678 1352 aa11.42□□□□□ -0.58
HLA-DPA1-247ENST00000479107 PHLDB1Q86UU1 1377 aa11.42□□□□□ -0.58
HLA-DPA1-247ENST00000479107 WASHC2CQ9Y4E1 1318 aa11.41□□□□□ -0.58
HLA-DPA1-247ENST00000479107 AKNAQ7Z591 1439 aa11.41□□□□□ -0.58
HLA-DPA1-247ENST00000479107 EIF4G2P78344 907 aaKnown RBP eCLIP11.41□□□□□ -0.58
HLA-DPA1-247ENST00000479107 ASXL2Q76L83 1435 aa11.41□□□□□ -0.58
HLA-DPA1-247ENST00000479107 HSPA2P54652 639 aa11.41□□□□□ -0.58
HLA-DPA1-247ENST00000479107 FBXO41Q8TF61 875 aa11.4□□□□□ -0.58
HLA-DPA1-247ENST00000479107 CUX1P39880 1505 aa11.39□□□□□ -0.59
HLA-DPA1-247ENST00000479107 CCER2I3L3R5 266 aa11.39□□□□□ -0.59
HLA-DPA1-247ENST00000479107 ILDR1Q86SU0 546 aaPredicted RBP11.38□□□□□ -0.59
HLA-DPA1-247ENST00000479107 SALL2Q9Y467 1007 aaPredicted RBP11.38□□□□□ -0.59
HLA-DPA1-247ENST00000479107 BECN1Q14457 450 aa11.38□□□□□ -0.59
HLA-DPA1-247ENST00000479107 ARXQ96QS3 562 aa11.38□□□□□ -0.59
HLA-DPA1-247ENST00000479107 KIF3BO15066 747 aa11.37□□□□□ -0.59
HLA-DPA1-247ENST00000479107 THEMISQ8N1K5 641 aaPredicted RBP11.36□□□□□ -0.59
HLA-DPA1-247ENST00000479107 ANKLE2Q86XL3 938 aa11.36□□□□□ -0.59
HLA-DPA1-247ENST00000479107 LAS1LQ9Y4W2 734 aaKnown RBP11.35□□□□□ -0.59
HLA-DPA1-247ENST00000479107 ERICH3Q5RHP9 1530 aa11.35□□□□□ -0.59
HLA-DPA1-247ENST00000479107 SF3B2Q13435 895 aaKnown RBP11.34□□□□□ -0.59
HLA-DPA1-247ENST00000479107 TRIM44Q96DX7 344 aaPredicted RBP11.34□□□□□ -0.59
HLA-DPA1-247ENST00000479107 PLEKHG5O94827 1062 aa11.34□□□□□ -0.59
HLA-DPA1-247ENST00000479107 PPP6R1Q9UPN7 881 aa11.34□□□□□ -0.59
HLA-DPA1-247ENST00000479107 CCDC9Q9Y3X0 531 aaKnown RBP11.34□□□□□ -0.59
HLA-DPA1-247ENST00000479107 FMN1Q68DA7 1419 aa11.34□□□□□ -0.59
HLA-DPA1-247ENST00000479107 B4GALNT3Q6L9W6 998 aa11.33□□□□□ -0.6
HLA-DPA1-247ENST00000479107 LMOD2Q6P5Q4 547 aa11.33□□□□□ -0.6
HLA-DPA1-247ENST00000479107 WDR97A6NE52 1622 aa11.33□□□□□ -0.6
HLA-DPA1-247ENST00000479107 RSPH4AQ5TD94 716 aa11.32□□□□□ -0.6
HLA-DPA1-247ENST00000479107 KDM6BO15054 1643 aa11.32□□□□□ -0.6
HLA-DPA1-247ENST00000479107 TIMELESSQ9UNS1 1208 aa11.31□□□□□ -0.6
HLA-DPA1-247ENST00000479107 DENND4BO75064 1496 aaPredicted RBP11.3□□□□□ -0.6
HLA-DPA1-247ENST00000479107 NAP1L5Q96NT1 182 aaPredicted RBP11.3□□□□□ -0.6
HLA-DPA1-247ENST00000479107 CERKQ8TCT0 537 aa11.29□□□□□ -0.6
HLA-DPA1-247ENST00000479107 ATF3P18847 181 aa11.29□□□□□ -0.6
HLA-DPA1-247ENST00000479107 NUP160Q12769 1436 aa11.29□□□□□ -0.6
HLA-DPA1-247ENST00000479107 WDR43Q15061 677 aaKnown RBP eCLIP11.28□□□□□ -0.6
HLA-DPA1-247ENST00000479107 ABCC10Q5T3U5 1492 aa11.28□□□□□ -0.6
HLA-DPA1-247ENST00000479107 CHIC2Q9UKJ5 165 aa11.28□□□□□ -0.6
HLA-DPA1-247ENST00000479107 CEP170Q5SW79 1584 aa11.27□□□□□ -0.6
HLA-DPA1-247ENST00000479107 HNRNPMP52272 730 aaKnown RBP eCLIP11.27□□□□□ -0.61
HLA-DPA1-247ENST00000479107 CEBPAP49715 358 aaPredicted RBP11.27□□□□□ -0.61
HLA-DPA1-247ENST00000479107 PROSER2Q86WR7 435 aaPredicted RBP11.27□□□□□ -0.61
HLA-DPA1-247ENST00000479107 SCAPERQ9BY12 1400 aa11.26□□□□□ -0.61
HLA-DPA1-247ENST00000479107 LMTK3Q96Q04 1460 aa11.26□□□□□ -0.61
HLA-DPA1-247ENST00000479107 TNNT2P45379 298 aaPredicted RBP11.26□□□□□ -0.61
HLA-DPA1-247ENST00000479107 ABCC2Q92887 1545 aa11.26□□□□□ -0.61
HLA-DPA1-247ENST00000479107 FANCAO15360 1455 aa11.25□□□□□ -0.61
HLA-DPA1-247ENST00000479107 SIN3AQ96ST3 1273 aa11.25□□□□□ -0.61
HLA-DPA1-247ENST00000479107 CHD1O14646 1710 aa11.24□□□□□ -0.61
HLA-DPA1-247ENST00000479107 UHRF1BP1Q6BDS2 1440 aa11.24□□□□□ -0.61
HLA-DPA1-247ENST00000479107 WDR7Q9Y4E6 1490 aa11.24□□□□□ -0.61
HLA-DPA1-247ENST00000479107 AFAP1Q8N556 730 aa11.24□□□□□ -0.61
HLA-DPA1-247ENST00000479107 FHOD3Q2V2M9 1422 aa11.23□□□□□ -0.61
HLA-DPA1-247ENST00000479107 GOLGA6L22H0YM25 854 aa11.23□□□□□ -0.61
HLA-DPA1-247ENST00000479107 PRDM2Q13029 1718 aa11.23□□□□□ -0.61
HLA-DPA1-247ENST00000479107 L1TD1Q5T7N2 865 aaKnown RBP11.22□□□□□ -0.61
HLA-DPA1-247ENST00000479107 FANCIQ9NVI1 1328 aa11.22□□□□□ -0.61
HLA-DPA1-247ENST00000479107 IQGAP2Q13576 1575 aa11.22□□□□□ -0.61
HLA-DPA1-247ENST00000479107 IPO9Q96P70 1041 aaKnown RBP11.21□□□□□ -0.61
HLA-DPA1-247ENST00000479107 PKD2Q13563 968 aa11.2□□□□□ -0.62
HLA-DPA1-247ENST00000479107 CCDC18Q5T9S5 1454 aa11.2□□□□□ -0.62
HLA-DPA1-247ENST00000479107 TXNDC2Q86VQ3 553 aa11.19□□□□□ -0.62
HLA-DPA1-247ENST00000479107 ZBTB7CA1YPR0 619 aa11.19□□□□□ -0.62
HLA-DPA1-247ENST00000479107 NUTM2BA6NNL0 878 aaPredicted RBP11.19□□□□□ -0.62
HLA-DPA1-247ENST00000479107 NUTM2EB1AL46 878 aaPredicted RBP11.19□□□□□ -0.62
HLA-DPA1-247ENST00000479107 NUTM2DQ5VT03 806 aaPredicted RBP11.19□□□□□ -0.62
HLA-DPA1-247ENST00000479107 NUTM2AQ8IVF1 878 aaPredicted RBP11.19□□□□□ -0.62
HLA-DPA1-247ENST00000479107 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.19□□□□□ -0.62
HLA-DPA1-247ENST00000479107 TOP2BQ02880 1626 aa11.19□□□□□ -0.62
HLA-DPA1-247ENST00000479107 ADAMTS12P58397 1594 aa11.18□□□□□ -0.62
HLA-DPA1-247ENST00000479107 ARHGAP5Q13017 1502 aa11.17□□□□□ -0.62
HLA-DPA1-247ENST00000479107 VPS8Q8N3P4 1428 aa11.17□□□□□ -0.62
HLA-DPA1-247ENST00000479107 TCERG1O14776 1098 aaKnown RBP11.17□□□□□ -0.62
HLA-DPA1-247ENST00000479107 USP35Q9P2H5 1018 aa11.17□□□□□ -0.62
HLA-DPA1-247ENST00000479107 KDM4FA0A1W2PPD8 638 aa11.16□□□□□ -0.62
HLA-DPA1-247ENST00000479107 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.16□□□□□ -0.62
HLA-DPA1-247ENST00000479107 ADGRL1O94910 1474 aa11.16□□□□□ -0.62
HLA-DPA1-247ENST00000479107 RRP7BPQ9NSQ0 103 aa11.16□□□□□ -0.62
HLA-DPA1-247ENST00000479107 KDM2AQ9Y2K7 1162 aa11.14□□□□□ -0.63
HLA-DPA1-247ENST00000479107 CUL7Q14999 1698 aa11.14□□□□□ -0.63
HLA-DPA1-247ENST00000479107 RGS3P49796 1198 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms