RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 POGKQ9P215 609 aa27.97■■■□□ 2.07
SDF4-206ENST00000478938 KIF7Q2M1P5 1343 aa27.97■■■□□ 2.07
SDF4-206ENST00000478938 PNNQ9H307 717 aaKnown RBP27.93■■■□□ 2.06
SDF4-206ENST00000478938 ATP1B4Q9UN42 357 aaPredicted RBP27.92■■■□□ 2.06
SDF4-206ENST00000478938 BIVM-ERCC5R4GMW8 1640 aa27.91■■■□□ 2.06
SDF4-206ENST00000478938 PTPN23Q9H3S7 1636 aa27.91■■■□□ 2.06
SDF4-206ENST00000478938 RCAN3Q9UKA8 241 aa27.9■■■□□ 2.06
SDF4-206ENST00000478938 HFM1A2PYH4 1435 aa27.9■■■□□ 2.06
SDF4-206ENST00000478938 PTPRKQ15262 1439 aa27.89■■■□□ 2.06
SDF4-206ENST00000478938 CFAP43Q8NDM7 1665 aa27.89■■■□□ 2.05
SDF4-206ENST00000478938 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.86■■■□□ 2.059e-8■■■■□ 26.1
SDF4-206ENST00000478938 PNISRQ8TF01 805 aaKnown RBP27.85■■■□□ 2.05
SDF4-206ENST00000478938 KIF27Q86VH2 1401 aa27.84■■■□□ 2.05
SDF4-206ENST00000478938 ARXQ96QS3 562 aa27.84■■■□□ 2.05
SDF4-206ENST00000478938 DHX29Q7Z478 1369 aaKnown RBP27.84■■■□□ 2.05
SDF4-206ENST00000478938 ABCA5Q8WWZ7 1642 aa27.83■■■□□ 2.05
SDF4-206ENST00000478938 L3MBTL2Q969R5 705 aa27.82■■■□□ 2.04
SDF4-206ENST00000478938 NAIPQ13075 1403 aa27.8■■■□□ 2.04
SDF4-206ENST00000478938 PCF11O94913 1555 aaKnown RBP27.8■■■□□ 2.04
SDF4-206ENST00000478938 L1TD1Q5T7N2 865 aaKnown RBP27.8■■■□□ 2.04
SDF4-206ENST00000478938 A0A0U1RQG5 324 aaPredicted RBP27.79■■■□□ 2.04
SDF4-206ENST00000478938 PLIN1O60240 522 aa27.79■■■□□ 2.04
SDF4-206ENST00000478938 CLCN1P35523 988 aa27.79■■■□□ 2.04
SDF4-206ENST00000478938 FGD6Q6ZV73 1430 aa27.78■■■□□ 2.04
SDF4-206ENST00000478938 TMC1Q8TDI8 760 aa27.77■■■□□ 2.04
SDF4-206ENST00000478938 POLR3GLQ9BT43 218 aa27.77■■■□□ 2.04
SDF4-206ENST00000478938 P3H3Q8IVL6 736 aa27.75■■■□□ 2.03
SDF4-206ENST00000478938 NBPF8Q3BBV2 869 aa27.74■■■□□ 2.03
SDF4-206ENST00000478938 FMN1Q68DA7 1419 aa27.74■■■□□ 2.03
SDF4-206ENST00000478938 C8orf34Q49A92 452 aa27.74■■■□□ 2.03
SDF4-206ENST00000478938 CRBNQ96SW2 442 aa27.74■■■□□ 2.03
SDF4-206ENST00000478938 DENND4BO75064 1496 aaPredicted RBP27.72■■■□□ 2.03
SDF4-206ENST00000478938 ARID4BQ4LE39 1312 aaPredicted RBP27.72■■■□□ 2.03
SDF4-206ENST00000478938 SLC24A1O60721 1099 aa27.71■■■□□ 2.03
SDF4-206ENST00000478938 RBM10P98175 930 aaKnown RBP27.71■■■□□ 2.03
SDF4-206ENST00000478938 FAM161AQ3B820 660 aa27.71■■■□□ 2.03
SDF4-206ENST00000478938 POLR1AO95602 1720 aaPredicted RBP27.71■■■□□ 2.03
SDF4-206ENST00000478938 SPATA31E1Q6ZUB1 1445 aa27.7■■■□□ 2.02
SDF4-206ENST00000478938 CUX1P39880 1505 aa27.69■■■□□ 2.02
SDF4-206ENST00000478938 XRCC6P12956 609 aaKnown RBP eCLIP27.69■■■□□ 2.02
SDF4-206ENST00000478938 PANK2Q9BZ23 570 aa27.68■■■□□ 2.02
SDF4-206ENST00000478938 LRPPRCP42704 1394 aaKnown RBP27.64■■■□□ 2.02
SDF4-206ENST00000478938 FOXD1Q16676 465 aa27.64■■■□□ 2.02
SDF4-206ENST00000478938 KTN1Q86UP2 1357 aaKnown RBP27.62■■■□□ 2.01
SDF4-206ENST00000478938 CDCA7LQ96GN5 454 aa27.61■■■□□ 2.01
SDF4-206ENST00000478938 KDM2BQ8NHM5 1336 aa27.61■■■□□ 2.01
SDF4-206ENST00000478938 RRP7BPQ9NSQ0 103 aa27.6■■■□□ 2.01
SDF4-206ENST00000478938 SLKQ9H2G2 1235 aaPredicted RBP27.59■■■□□ 2.01
SDF4-206ENST00000478938 GOLGA6L3A6NEY3 463 aa27.57■■■□□ 2
SDF4-206ENST00000478938 AAMPQ13685 434 aa27.57■■■□□ 2
SDF4-206ENST00000478938 C20orf194Q5TEA3 1177 aa27.56■■■□□ 2
SDF4-206ENST00000478938 PRDM4Q9UKN5 801 aa27.55■■■□□ 2
SDF4-206ENST00000478938 HECW1Q76N89 1606 aa27.54■■■□□ 2
SDF4-206ENST00000478938 RGS3P49796 1198 aa27.54■■■□□ 2
SDF4-206ENST00000478938 FSD2A1L4K1 749 aa27.53■■■□□ 2
SDF4-206ENST00000478938 FHOD3Q2V2M9 1422 aa27.52■■■□□ 2
SDF4-206ENST00000478938 GZF1Q9H116 711 aaPredicted RBP27.52■■■□□ 2
SDF4-206ENST00000478938 CHIC2Q9UKJ5 165 aa27.52■■■□□ 2
SDF4-206ENST00000478938 CENPQQ7L2Z9 268 aaPredicted RBP27.51■■□□□ 1.99
SDF4-206ENST00000478938 MPHOSPH9Q99550 1183 aa27.51■■□□□ 1.99
SDF4-206ENST00000478938 PDCL3Q9H2J4 239 aa27.51■■□□□ 1.99
SDF4-206ENST00000478938 ERBB4Q15303 1308 aa27.5■■□□□ 1.99
SDF4-206ENST00000478938 CALD1Q05682 793 aaKnown RBP27.5■■□□□ 1.99
SDF4-206ENST00000478938 MYOM3Q5VTT5 1437 aa27.5■■□□□ 1.99
SDF4-206ENST00000478938 BCORL1Q5H9F3 1711 aa27.49■■□□□ 1.99
SDF4-206ENST00000478938 FYCO1Q9BQS8 1478 aa27.49■■□□□ 1.99
SDF4-206ENST00000478938 PDE3BQ13370 1112 aa27.48■■□□□ 1.99
SDF4-206ENST00000478938 TEX14Q8IWB6 1497 aa27.47■■□□□ 1.99
SDF4-206ENST00000478938 CENPJQ9HC77 1338 aaPredicted RBP27.47■■□□□ 1.99
SDF4-206ENST00000478938 IGF1RP08069 1367 aa27.46■■□□□ 1.99
SDF4-206ENST00000478938 KDM6BO15054 1643 aa27.46■■□□□ 1.99
SDF4-206ENST00000478938 ESPNB1AK53 854 aa27.45■■□□□ 1.98
SDF4-206ENST00000478938 BRD4O60885 1362 aaPredicted RBP27.45■■□□□ 1.98
SDF4-206ENST00000478938 USP19O94966 1318 aa27.44■■□□□ 1.98
SDF4-206ENST00000478938 FGD1P98174 961 aa27.44■■□□□ 1.98
SDF4-206ENST00000478938 MIA2Q96PC5 1412 aa27.43■■□□□ 1.98
SDF4-206ENST00000478938 CFTRP13569 1480 aa27.43■■□□□ 1.98
SDF4-206ENST00000478938 TPM2P07951 284 aa27.42■■□□□ 1.98
SDF4-206ENST00000478938 MYBBP1AQ9BQG0 1328 aaKnown RBP27.42■■□□□ 1.98
SDF4-206ENST00000478938 CASKIN1Q8WXD9 1431 aa27.42■■□□□ 1.98
SDF4-206ENST00000478938 MTUS2Q5JR59 1369 aa27.42■■□□□ 1.98
SDF4-206ENST00000478938 ANTXR1Q9H6X2 564 aa27.4■■□□□ 1.98
SDF4-206ENST00000478938 RPRD2Q5VT52 1461 aaKnown RBP27.39■■□□□ 1.98
SDF4-206ENST00000478938 CARMIL1Q5VZK9 1371 aa27.38■■□□□ 1.97
SDF4-206ENST00000478938 USP47Q96K76 1375 aa27.38■■□□□ 1.97
SDF4-206ENST00000478938 BECN1Q14457 450 aa27.38■■□□□ 1.97
SDF4-206ENST00000478938 KIF15Q9NS87 1388 aa27.37■■□□□ 1.97
SDF4-206ENST00000478938 LAMC3Q9Y6N6 1575 aa27.35■■□□□ 1.97
SDF4-206ENST00000478938 SEC24BO95487 1268 aa27.34■■□□□ 1.97
SDF4-206ENST00000478938 GCC2Q8IWJ2 1684 aa27.34■■□□□ 1.97
SDF4-206ENST00000478938 ANKRD30BQ9BXX2 1392 aa27.33■■□□□ 1.97
SDF4-206ENST00000478938 CADPSQ9ULU8 1353 aa27.33■■□□□ 1.97
SDF4-206ENST00000478938 MYH16Q9H6N6 1097 aa27.33■■□□□ 1.97
SDF4-206ENST00000478938 MRE11P49959 708 aa27.32■■□□□ 1.96
SDF4-206ENST00000478938 ZNF326Q5BKZ1 582 aaKnown RBP27.32■■□□□ 1.96
SDF4-206ENST00000478938 FGD5Q6ZNL6 1462 aa27.32■■□□□ 1.96
SDF4-206ENST00000478938 KIAA1211Q6ZU35 1233 aa27.3■■□□□ 1.96
SDF4-206ENST00000478938 MCM4P33991 863 aa27.28■■□□□ 1.96
SDF4-206ENST00000478938 RALBP1Q15311 655 aa27.28■■□□□ 1.96
SDF4-206ENST00000478938 GRPEL1Q9HAV7 217 aa27.28■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms