RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 PLCH2O75038 1416 aa28.77■■■□□ 2.2
VIM-204ENST00000478746 CDK13Q14004 1512 aaKnown RBP28.74■■■□□ 2.19
VIM-204ENST00000478746 FER1L4A9Z1Z3 1794 aa28.73■■■□□ 2.19
VIM-204ENST00000478746 EFCAB2Q5VUJ9 269 aa28.72■■■□□ 2.19
VIM-204ENST00000478746 ATP1B4Q9UN42 357 aaPredicted RBP28.72■■■□□ 2.19
VIM-204ENST00000478746 ATP10AO60312 1499 aa28.72■■■□□ 2.19
VIM-204ENST00000478746 CEBPAP49715 358 aaPredicted RBP28.68■■■□□ 2.18
VIM-204ENST00000478746 C9orf84Q5VXU9 1444 aa28.66■■■□□ 2.18
VIM-204ENST00000478746 ARHGEF12Q9NZN5 1544 aa28.65■■■□□ 2.18
VIM-204ENST00000478746 CDK11AQ9UQ88 783 aaPredicted RBP28.65■■■□□ 2.18
VIM-204ENST00000478746 DMRT2Q9Y5R5 561 aa28.63■■■□□ 2.17
VIM-204ENST00000478746 MYT1LQ9UL68 1186 aa28.6■■■□□ 2.17
VIM-204ENST00000478746 PREX1Q8TCU6 1659 aa28.59■■■□□ 2.17
VIM-204ENST00000478746 MYO5CQ9NQX4 1742 aa28.58■■■□□ 2.17
VIM-204ENST00000478746 UBTFP17480 764 aaKnown RBP28.58■■■□□ 2.17
VIM-204ENST00000478746 AFAP1Q8N556 730 aa28.58■■■□□ 2.17
VIM-204ENST00000478746 EHMT2Q96KQ7 1210 aa28.57■■■□□ 2.16
VIM-204ENST00000478746 FMN1Q68DA7 1419 aa28.57■■■□□ 2.16
VIM-204ENST00000478746 ZNF518AQ6AHZ1 1483 aa28.54■■■□□ 2.16
VIM-204ENST00000478746 SETD1BQ9UPS6 1966 aaKnown RBP28.53■■■□□ 2.16
VIM-204ENST00000478746 UHRF1BP1Q6BDS2 1440 aa28.52■■■□□ 2.16
VIM-204ENST00000478746 STRCQ7RTU9 1775 aa28.5■■■□□ 2.15
VIM-204ENST00000478746 ARHGAP5Q13017 1502 aa28.49■■■□□ 2.15
VIM-204ENST00000478746 KIF14Q15058 1648 aa28.49■■■□□ 2.15
VIM-204ENST00000478746 DISP3Q9P2K9 1392 aa28.49■■■□□ 2.15
VIM-204ENST00000478746 TROQ12816 1431 aaPredicted RBP28.48■■■□□ 2.15
VIM-204ENST00000478746 ESF1Q9H501 851 aaKnown RBP28.46■■■□□ 2.15
VIM-204ENST00000478746 ARHGAP35Q9NRY4 1499 aa28.46■■■□□ 2.15
VIM-204ENST00000478746 KDM5CP41229 1560 aa28.45■■■□□ 2.15
VIM-204ENST00000478746 CLIP1P30622 1438 aa28.45■■■□□ 2.15
VIM-204ENST00000478746 ILDR2Q71H61 639 aa28.43■■■□□ 2.14
VIM-204ENST00000478746 DIP2CQ9Y2E4 1556 aa28.41■■■□□ 2.14
VIM-204ENST00000478746 PTPRTO14522 1441 aa28.39■■■□□ 2.14
VIM-204ENST00000478746 MLH3Q9UHC1 1453 aa28.39■■■□□ 2.13
VIM-204ENST00000478746 REREQ9P2R6 1566 aa28.38■■■□□ 2.13
VIM-204ENST00000478746 SOCS7O14512 581 aa28.36■■■□□ 2.13
VIM-204ENST00000478746 C3P01024 1663 aa28.35■■■□□ 2.13
VIM-204ENST00000478746 CDC42BPBQ9Y5S2 1711 aa28.35■■■□□ 2.13
VIM-204ENST00000478746 TRAPPC8Q9Y2L5 1435 aa28.35■■■□□ 2.13
VIM-204ENST00000478746 ABCA6Q8N139 1617 aa28.34■■■□□ 2.13
VIM-204ENST00000478746 AGLP35573 1532 aa28.33■■■□□ 2.13
VIM-204ENST00000478746 LRRIQ1Q96JM4 1722 aa28.29■■■□□ 2.12
VIM-204ENST00000478746 CNTLNQ9NXG0 1405 aa28.26■■■□□ 2.12
VIM-204ENST00000478746 ABCC1P33527 1531 aa28.26■■■□□ 2.11
VIM-204ENST00000478746 PREX2Q70Z35 1606 aa28.25■■■□□ 2.11
VIM-204ENST00000478746 LTBP4Q8N2S1 1624 aa28.23■■■□□ 2.11
VIM-204ENST00000478746 NCOA1Q15788 1441 aa28.23■■■□□ 2.11
VIM-204ENST00000478746 ITSN2Q9NZM3 1697 aa28.23■■■□□ 2.11
VIM-204ENST00000478746 KIDINS220Q9ULH0 1771 aa28.22■■■□□ 2.11
VIM-204ENST00000478746 ZNF777Q9ULD5 760 aaPredicted RBP28.21■■■□□ 2.11
VIM-204ENST00000478746 CCDC18Q5T9S5 1454 aa28.2■■■□□ 2.1
VIM-204ENST00000478746 CASKIN1Q8WXD9 1431 aa28.19■■■□□ 2.1
VIM-204ENST00000478746 IQSEC2Q5JU85 1478 aa28.19■■■□□ 2.1
VIM-204ENST00000478746 SPATA31D1Q6ZQQ2 1576 aa28.17■■■□□ 2.1
VIM-204ENST00000478746 ZMYM3Q14202 1370 aa28.17■■■□□ 2.1
VIM-204ENST00000478746 NPATQ14207 1427 aa28.16■■■□□ 2.1
VIM-204ENST00000478746 SPAG9O60271 1321 aaKnown RBP28.15■■■□□ 2.1
VIM-204ENST00000478746 NCKAP5LQ9HCH0 1330 aa28.15■■■□□ 2.1
VIM-204ENST00000478746 CDC42BPAQ5VT25 1732 aa28.15■■■□□ 2.1
VIM-204ENST00000478746 CAMSAP1Q5T5Y3 1602 aa28.14■■■□□ 2.1
VIM-204ENST00000478746 HNRNPMP52272 730 aaKnown RBP eCLIP28.13■■■□□ 2.09
VIM-204ENST00000478746 SAMD9LQ8IVG5 1584 aa28.12■■■□□ 2.09
VIM-204ENST00000478746 CHIC1Q5VXU3 224 aa28.11■■■□□ 2.09
VIM-204ENST00000478746 MROH2AA6NES4 1674 aa28.1■■■□□ 2.09
VIM-204ENST00000478746 ZNF335Q9H4Z2 1342 aaPredicted RBP28.08■■■□□ 2.09
VIM-204ENST00000478746 UBAP1LF5GYI3 381 aa28.07■■■□□ 2.08
VIM-204ENST00000478746 SUPT6HQ7KZ85 1726 aaKnown RBP28.06■■■□□ 2.08
VIM-204ENST00000478746 PKD2Q13563 968 aa28.06■■■□□ 2.08
VIM-204ENST00000478746 SYCP2Q9BX26 1530 aa28.05■■■□□ 2.08
VIM-204ENST00000478746 GPATCH8Q9UKJ3 1502 aaKnown RBP28.05■■■□□ 2.08
VIM-204ENST00000478746 GGT6Q6P531 493 aa28.04■■■□□ 2.08
VIM-204ENST00000478746 CFDP1Q9UEE9 299 aaPredicted RBP28.03■■■□□ 2.08
VIM-204ENST00000478746 FYCO1Q9BQS8 1478 aa28.02■■■□□ 2.08
VIM-204ENST00000478746 KIAA1107Q9UPP5 1409 aa28.01■■■□□ 2.07
VIM-204ENST00000478746 CLTCQ00610 1675 aaKnown RBP28■■■□□ 2.07
VIM-204ENST00000478746 A2MP01023 1474 aa28■■■□□ 2.07
VIM-204ENST00000478746 ATP7AQ04656 1500 aa27.99■■■□□ 2.07
VIM-204ENST00000478746 PLA2R1Q13018 1463 aa27.98■■■□□ 2.07
VIM-204ENST00000478746 PPP6R1Q9UPN7 881 aa27.98■■■□□ 2.07
VIM-204ENST00000478746 PTPRKQ15262 1439 aa27.98■■■□□ 2.07
VIM-204ENST00000478746 PLEKHH2Q8IVE3 1493 aa27.97■■■□□ 2.07
VIM-204ENST00000478746 CCNB3Q8WWL7 1395 aa27.96■■■□□ 2.07
VIM-204ENST00000478746 MYO3AQ8NEV4 1616 aa27.94■■■□□ 2.06
VIM-204ENST00000478746 TCOF1Q13428 1488 aaKnown RBP27.94■■■□□ 2.06
VIM-204ENST00000478746 PLXNC1O60486 1568 aa27.94■■■□□ 2.06
VIM-204ENST00000478746 ZNF142P52746 1687 aaPredicted RBP27.94■■■□□ 2.06
VIM-204ENST00000478746 CEP170BQ9Y4F5 1589 aaPredicted RBP27.93■■■□□ 2.06
VIM-204ENST00000478746 INO80Q9ULG1 1556 aaPredicted RBP27.91■■■□□ 2.06
VIM-204ENST00000478746 MTUS2Q5JR59 1369 aa27.86■■■□□ 2.05
VIM-204ENST00000478746 ZNF644Q9H582 1327 aaPredicted RBP27.86■■■□□ 2.05
VIM-204ENST00000478746 ADGBQ8N7X0 1667 aa27.84■■■□□ 2.05
VIM-204ENST00000478746 A2ML1A8K2U0 1454 aa27.83■■■□□ 2.05
VIM-204ENST00000478746 SCAF1Q9H7N4 1312 aaKnown RBP27.83■■■□□ 2.05
VIM-204ENST00000478746 TOM1O60784 492 aa27.8■■■□□ 2.04
VIM-204ENST00000478746 PIP4K2BP78356 416 aa27.8■■■□□ 2.04
VIM-204ENST00000478746 DNMT1P26358 1616 aaKnown RBP27.8■■■□□ 2.04
VIM-204ENST00000478746 DHX29Q7Z478 1369 aaKnown RBP27.79■■■□□ 2.04
VIM-204ENST00000478746 HSPA1LP34931 641 aa27.78■■■□□ 2.04
VIM-204ENST00000478746 FBXO31Q5XUX0 539 aaPredicted RBP27.78■■■□□ 2.04
VIM-204ENST00000478746 RTEL1-TNFRSF6BF6WH68 1400 aa27.77■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms