RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-208ENST00000478423 A0A0G2JS52 829 aa18.58■□□□□ 0.56
NPHP4-208ENST00000478423 PPP4R2Q9NY27 417 aa18.58■□□□□ 0.56
NPHP4-208ENST00000478423 LAS1LQ9Y4W2 734 aaKnown RBP18.58■□□□□ 0.56
NPHP4-208ENST00000478423 LMOD2Q6P5Q4 547 aa18.57■□□□□ 0.56
NPHP4-208ENST00000478423 FTSJ3Q8IY81 847 aaKnown RBP18.55■□□□□ 0.56
NPHP4-208ENST00000478423 FRAT1Q92837 279 aaPredicted RBP18.55■□□□□ 0.56
NPHP4-208ENST00000478423 MORC1Q86VD1 984 aa18.55■□□□□ 0.56
NPHP4-208ENST00000478423 HDGFP51858 240 aaKnown RBP18.54■□□□□ 0.56
NPHP4-208ENST00000478423 B4GALNT3Q6L9W6 998 aa18.53■□□□□ 0.56
NPHP4-208ENST00000478423 CFTRP13569 1480 aa18.52■□□□□ 0.56
NPHP4-208ENST00000478423 AQRO60306 1485 aaKnown RBP eCLIP18.52■□□□□ 0.552e-7■■■■■ 54.1
NPHP4-208ENST00000478423 HAP1P54257 671 aaPredicted RBP18.51■□□□□ 0.55
NPHP4-208ENST00000478423 KTN1Q86UP2 1357 aaKnown RBP18.5■□□□□ 0.55
NPHP4-208ENST00000478423 SOX12O15370 315 aa18.49■□□□□ 0.55
NPHP4-208ENST00000478423 KIF21BO75037 1637 aa18.48■□□□□ 0.55
NPHP4-208ENST00000478423 WASHC2CQ9Y4E1 1318 aa18.47■□□□□ 0.55
NPHP4-208ENST00000478423 RGS3P49796 1198 aa18.47■□□□□ 0.55
NPHP4-208ENST00000478423 ZNF644Q9H582 1327 aaPredicted RBP18.46■□□□□ 0.55
NPHP4-208ENST00000478423 SYNJ1O43426 1573 aa18.46■□□□□ 0.55
NPHP4-208ENST00000478423 PHLDB1Q86UU1 1377 aa18.45■□□□□ 0.54
NPHP4-208ENST00000478423 RALBP1Q15311 655 aa18.45■□□□□ 0.54
NPHP4-208ENST00000478423 ANP32BQ92688 251 aaKnown RBP18.45■□□□□ 0.54
NPHP4-208ENST00000478423 ST20-MTHFSA0A0A6YYL1 179 aa18.44■□□□□ 0.54
NPHP4-208ENST00000478423 NESP48681 1621 aa18.43■□□□□ 0.54
NPHP4-208ENST00000478423 NUTM2DQ5VT03 806 aaPredicted RBP18.42■□□□□ 0.54
NPHP4-208ENST00000478423 PNNQ9H307 717 aaKnown RBP18.42■□□□□ 0.54
NPHP4-208ENST00000478423 FGD6Q6ZV73 1430 aa18.42■□□□□ 0.54
NPHP4-208ENST00000478423 HDGFL2Q7Z4V5 671 aaPredicted RBP18.41■□□□□ 0.54
NPHP4-208ENST00000478423 ARAP1Q96P48 1450 aa18.4■□□□□ 0.54
NPHP4-208ENST00000478423 ARXQ96QS3 562 aa18.4■□□□□ 0.54
NPHP4-208ENST00000478423 CCDC144AA2RUR9 1427 aa18.4■□□□□ 0.54
NPHP4-208ENST00000478423 CYB5RLQ6IPT4 315 aa18.39■□□□□ 0.54
NPHP4-208ENST00000478423 BECN1Q14457 450 aa18.39■□□□□ 0.53
NPHP4-208ENST00000478423 DDRGK1Q96HY6 314 aa18.39■□□□□ 0.53
NPHP4-208ENST00000478423 U2AF1L5P0DN76 240 aaPredicted RBP18.38■□□□□ 0.53
NPHP4-208ENST00000478423 U2AF1Q01081 240 aaKnown RBP eCLIP18.38■□□□□ 0.53
NPHP4-208ENST00000478423 MYOM3Q5VTT5 1437 aa18.38■□□□□ 0.53
NPHP4-208ENST00000478423 LRRC9Q6ZRR7 1453 aa18.38■□□□□ 0.53
NPHP4-208ENST00000478423 OSCARQ8IYS5 282 aa18.38■□□□□ 0.53
NPHP4-208ENST00000478423 NLRP13Q86W25 1043 aa18.37■□□□□ 0.53
NPHP4-208ENST00000478423 MS4A1P11836 297 aa18.36■□□□□ 0.53
NPHP4-208ENST00000478423 TRAK1Q9UPV9 953 aa18.35■□□□□ 0.53
NPHP4-208ENST00000478423 EIF3AQ14152 1382 aaKnown RBP18.35■□□□□ 0.53
NPHP4-208ENST00000478423 PRXQ9BXM0 1461 aa18.35■□□□□ 0.53
NPHP4-208ENST00000478423 ERICH3Q5RHP9 1530 aa18.34■□□□□ 0.53
NPHP4-208ENST00000478423 CASKIN1Q8WXD9 1431 aa18.34■□□□□ 0.53
NPHP4-208ENST00000478423 GRIN2BQ13224 1484 aa18.33■□□□□ 0.53
NPHP4-208ENST00000478423 RCAN3Q9UKA8 241 aa18.33■□□□□ 0.52
NPHP4-208ENST00000478423 HMGXB3Q12766 1538 aa18.31■□□□□ 0.52
NPHP4-208ENST00000478423 CHMP4BQ9H444 224 aaKnown RBP18.3■□□□□ 0.52
NPHP4-208ENST00000478423 CUX1P39880 1505 aa18.3■□□□□ 0.52
NPHP4-208ENST00000478423 PRKRIP1Q9H875 184 aaPredicted RBP18.29■□□□□ 0.52
NPHP4-208ENST00000478423 CC2D2AQ9P2K1 1620 aa18.28■□□□□ 0.52
NPHP4-208ENST00000478423 TERF2IPQ9NYB0 399 aa18.28■□□□□ 0.52
NPHP4-208ENST00000478423 TOPBP1Q92547 1522 aa18.28■□□□□ 0.52
NPHP4-208ENST00000478423 POLA1P09884 1462 aaPredicted RBP18.28■□□□□ 0.52
NPHP4-208ENST00000478423 NCOA2Q15596 1464 aa18.28■□□□□ 0.52
NPHP4-208ENST00000478423 PANK3Q9H999 370 aa18.28■□□□□ 0.52
NPHP4-208ENST00000478423 USP47Q96K76 1375 aa18.28■□□□□ 0.52
NPHP4-208ENST00000478423 KIF15Q9NS87 1388 aa18.28■□□□□ 0.52
NPHP4-208ENST00000478423 TOP2BQ02880 1626 aa18.27■□□□□ 0.52
NPHP4-208ENST00000478423 UACAQ9BZF9 1416 aa18.26■□□□□ 0.51
NPHP4-208ENST00000478423 PAK3O75914 559 aaPredicted RBP18.26■□□□□ 0.51
NPHP4-208ENST00000478423 ERICH6BQ5W0A0 696 aa18.24■□□□□ 0.51
NPHP4-208ENST00000478423 RTF1Q92541 710 aaKnown RBP18.24■□□□□ 0.51
NPHP4-208ENST00000478423 CCDC146Q8IYE0 955 aa18.23■□□□□ 0.51
NPHP4-208ENST00000478423 CASC1Q6TDU7 716 aa18.23■□□□□ 0.51
NPHP4-208ENST00000478423 VGFO15240 615 aaPredicted RBP18.22■□□□□ 0.51
NPHP4-208ENST00000478423 ANKRD50Q9ULJ7 1429 aa18.22■□□□□ 0.51
NPHP4-208ENST00000478423 NUTM2FA1L443 756 aa18.22■□□□□ 0.51
NPHP4-208ENST00000478423 GOLGA2Q08379 1002 aa18.22■□□□□ 0.51
NPHP4-208ENST00000478423 FYCO1Q9BQS8 1478 aa18.22■□□□□ 0.51
NPHP4-208ENST00000478423 EID1Q9Y6B2 187 aa18.22■□□□□ 0.51
NPHP4-208ENST00000478423 BICRAQ9NZM4 1560 aa18.22■□□□□ 0.51
NPHP4-208ENST00000478423 DNAJC5BQ9UF47 199 aa18.21■□□□□ 0.51
NPHP4-208ENST00000478423 MYBBP1AQ9BQG0 1328 aaKnown RBP18.2■□□□□ 0.5
NPHP4-208ENST00000478423 RRBP1Q9P2E9 1410 aaKnown RBP18.2■□□□□ 0.5
NPHP4-208ENST00000478423 AFAP1Q8N556 730 aa18.19■□□□□ 0.5
NPHP4-208ENST00000478423 MRC2Q9UBG0 1479 aa18.19■□□□□ 0.5
NPHP4-208ENST00000478423 PRDM2Q13029 1718 aa18.18■□□□□ 0.5
NPHP4-208ENST00000478423 IPO8O15397 1037 aaKnown RBP18.18■□□□□ 0.5
NPHP4-208ENST00000478423 RBM19Q9Y4C8 960 aaKnown RBP18.18■□□□□ 0.5
NPHP4-208ENST00000478423 OS9Q13438 667 aaPredicted RBP18.18■□□□□ 0.5
NPHP4-208ENST00000478423 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.18■□□□□ 0.5
NPHP4-208ENST00000478423 PDE3BQ13370 1112 aa18.17■□□□□ 0.5
NPHP4-208ENST00000478423 GOLGA6L22H0YM25 854 aa18.17■□□□□ 0.5
NPHP4-208ENST00000478423 ANP32EQ9BTT0 268 aa18.17■□□□□ 0.5
NPHP4-208ENST00000478423 NGDNQ8NEJ9 315 aaKnown RBP18.16■□□□□ 0.5
NPHP4-208ENST00000478423 CALD1Q05682 793 aaKnown RBP18.16■□□□□ 0.5
NPHP4-208ENST00000478423 NOP58Q9Y2X3 529 aaKnown RBP18.16■□□□□ 0.5
NPHP4-208ENST00000478423 PRG4Q92954 1404 aaPredicted RBP18.16■□□□□ 0.5
NPHP4-208ENST00000478423 EIF5BO60841 1220 aaKnown RBP18.15■□□□□ 0.5
NPHP4-208ENST00000478423 IFT140Q96RY7 1462 aa18.14■□□□□ 0.49
NPHP4-208ENST00000478423 FAM69CQ0P6D2 419 aa18.13■□□□□ 0.49
NPHP4-208ENST00000478423 CLUAP1Q96AJ1 413 aa18.13■□□□□ 0.49
NPHP4-208ENST00000478423 NCLP19338 710 aaKnown RBP18.12■□□□□ 0.49
NPHP4-208ENST00000478423 KIF7Q2M1P5 1343 aa18.11■□□□□ 0.49
NPHP4-208ENST00000478423 ITPRIPQ8IWB1 547 aa18.11■□□□□ 0.49
NPHP4-208ENST00000478423 RRP7AQ9Y3A4 280 aaKnown RBP18.11■□□□□ 0.49
NPHP4-208ENST00000478423 MINK1Q8N4C8 1332 aaPredicted RBP18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms