RNA–Protein interactions for RNA: ENST00000476494.1

CLDN4-205, Transcript of claudin 4, humanhuman

TSL 4

Gene CLDN4, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-205ENST00000476494 HECW1Q76N89 1606 aa11.52□□□□□ -0.57
CLDN4-205ENST00000476494 RAPGEF2Q9Y4G8 1499 aa11.51□□□□□ -0.57
CLDN4-205ENST00000476494 ARID3CA6NKF2 412 aa11.51□□□□□ -0.57
CLDN4-205ENST00000476494 ATP10AO60312 1499 aa11.5□□□□□ -0.57
CLDN4-205ENST00000476494 GOLGA3Q08378 1498 aa11.5□□□□□ -0.57
CLDN4-205ENST00000476494 PHF23Q9BUL5 403 aaPredicted RBP11.49□□□□□ -0.57
CLDN4-205ENST00000476494 C3P01024 1663 aa11.49□□□□□ -0.57
CLDN4-205ENST00000476494 TRAPPC8Q9Y2L5 1435 aa11.47□□□□□ -0.57
CLDN4-205ENST00000476494 ALKQ9UM73 1620 aa11.46□□□□□ -0.57
CLDN4-205ENST00000476494 C9orf84Q5VXU9 1444 aa11.46□□□□□ -0.57
CLDN4-205ENST00000476494 NCKAP5LQ9HCH0 1330 aa11.46□□□□□ -0.57
CLDN4-205ENST00000476494 CAMSAP1Q5T5Y3 1602 aa11.46□□□□□ -0.58
CLDN4-205ENST00000476494 PIP4K2BP78356 416 aa11.44□□□□□ -0.58
CLDN4-205ENST00000476494 CTTNBP2Q8WZ74 1663 aa11.43□□□□□ -0.58
CLDN4-205ENST00000476494 CFAP74Q9C0B2 1584 aa11.42□□□□□ -0.58
CLDN4-205ENST00000476494 TOM1O60784 492 aa11.42□□□□□ -0.58
CLDN4-205ENST00000476494 SRCAPQ6ZRS2 3230 aa11.42□□□□□ -0.58
CLDN4-205ENST00000476494 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.41□□□□□ -0.58
CLDN4-205ENST00000476494 SCAPERQ9BY12 1400 aa11.41□□□□□ -0.58
CLDN4-205ENST00000476494 TCOF1Q13428 1488 aaKnown RBP11.4□□□□□ -0.58
CLDN4-205ENST00000476494 POTEAQ6S8J7 498 aa11.4□□□□□ -0.58
CLDN4-205ENST00000476494 SCAF1Q9H7N4 1312 aaKnown RBP11.39□□□□□ -0.59
CLDN4-205ENST00000476494 PKD2Q13563 968 aa11.39□□□□□ -0.59
CLDN4-205ENST00000476494 PLA2R1Q13018 1463 aa11.38□□□□□ -0.59
CLDN4-205ENST00000476494 NUP153P49790 1475 aaKnown RBP11.38□□□□□ -0.59
CLDN4-205ENST00000476494 RAPGEF6Q8TEU7 1601 aa11.36□□□□□ -0.59
CLDN4-205ENST00000476494 SUPT5HO00267 1087 aaKnown RBP11.36□□□□□ -0.59
CLDN4-205ENST00000476494 REREQ9P2R6 1566 aa11.36□□□□□ -0.59
CLDN4-205ENST00000476494 NPATQ14207 1427 aa11.35□□□□□ -0.59
CLDN4-205ENST00000476494 AGLP35573 1532 aa11.35□□□□□ -0.59
CLDN4-205ENST00000476494 P3H3Q8IVL6 736 aa11.34□□□□□ -0.59
CLDN4-205ENST00000476494 CPS1P31327 1500 aa11.34□□□□□ -0.59
CLDN4-205ENST00000476494 PLCH2O75038 1416 aa11.34□□□□□ -0.59
CLDN4-205ENST00000476494 PLEKHD1A6NEE1 506 aa11.33□□□□□ -0.6
CLDN4-205ENST00000476494 PPP6R1Q9UPN7 881 aa11.33□□□□□ -0.6
CLDN4-205ENST00000476494 DIP2CQ9Y2E4 1556 aa11.33□□□□□ -0.6
CLDN4-205ENST00000476494 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.32□□□□□ -0.6
CLDN4-205ENST00000476494 HNRNPUL2Q1KMD3 747 aaKnown RBP11.32□□□□□ -0.6
CLDN4-205ENST00000476494 ZNF142P52746 1687 aaPredicted RBP11.32□□□□□ -0.6
CLDN4-205ENST00000476494 KDM5CP41229 1560 aa11.32□□□□□ -0.6
CLDN4-205ENST00000476494 AFAP1Q8N556 730 aa11.31□□□□□ -0.6
CLDN4-205ENST00000476494 PTPRKQ15262 1439 aa11.31□□□□□ -0.6
CLDN4-205ENST00000476494 SETD1AO15047 1707 aaKnown RBP11.31□□□□□ -0.6
CLDN4-205ENST00000476494 SHANK2Q9UPX8 1470 aa11.31□□□□□ -0.6
CLDN4-205ENST00000476494 CNTLNQ9NXG0 1405 aa11.3□□□□□ -0.6
CLDN4-205ENST00000476494 UPF1Q92900 1129 aaKnown RBP eCLIP11.29□□□□□ -0.6
CLDN4-205ENST00000476494 ZMYM3Q14202 1370 aa11.28□□□□□ -0.6
CLDN4-205ENST00000476494 SAMD9Q5K651 1589 aa11.28□□□□□ -0.6
CLDN4-205ENST00000476494 MROH2AA6NES4 1674 aa11.28□□□□□ -0.6
CLDN4-205ENST00000476494 ZNF518AQ6AHZ1 1483 aa11.28□□□□□ -0.6
CLDN4-205ENST00000476494 ABCA6Q8N139 1617 aa11.27□□□□□ -0.6
CLDN4-205ENST00000476494 FAM9AQ8IZU1 332 aaPredicted RBP11.27□□□□□ -0.61
CLDN4-205ENST00000476494 CEP170BQ9Y4F5 1589 aaPredicted RBP11.27□□□□□ -0.61
CLDN4-205ENST00000476494 VWDEQ8N2E2 1590 aa11.26□□□□□ -0.61
CLDN4-205ENST00000476494 NEURL4Q96JN8 1562 aa11.26□□□□□ -0.61
CLDN4-205ENST00000476494 MYO3AQ8NEV4 1616 aa11.26□□□□□ -0.61
CLDN4-205ENST00000476494 SUPT6HQ7KZ85 1726 aaKnown RBP11.26□□□□□ -0.61
CLDN4-205ENST00000476494 PRXQ9BXM0 1461 aa11.25□□□□□ -0.61
CLDN4-205ENST00000476494 MLH3Q9UHC1 1453 aa11.25□□□□□ -0.61
CLDN4-205ENST00000476494 EFCAB2Q5VUJ9 269 aa11.24□□□□□ -0.61
CLDN4-205ENST00000476494 ESF1Q9H501 851 aaKnown RBP11.24□□□□□ -0.61
CLDN4-205ENST00000476494 SENP3Q9H4L4 574 aaPredicted RBP11.23□□□□□ -0.61
CLDN4-205ENST00000476494 DNMT1P26358 1616 aaKnown RBP11.22□□□□□ -0.61
CLDN4-205ENST00000476494 STRCP1A6NGW2 1772 aa11.21□□□□□ -0.61
CLDN4-205ENST00000476494 LRRC7Q96NW7 1537 aa11.19□□□□□ -0.62
CLDN4-205ENST00000476494 KIDINS220Q9ULH0 1771 aa11.19□□□□□ -0.62
CLDN4-205ENST00000476494 POLR1AO95602 1720 aaPredicted RBP11.19□□□□□ -0.62
CLDN4-205ENST00000476494 A2ML1A8K2U0 1454 aa11.19□□□□□ -0.62
CLDN4-205ENST00000476494 MYO5CQ9NQX4 1742 aa11.18□□□□□ -0.62
CLDN4-205ENST00000476494 MED14O60244 1454 aa11.16□□□□□ -0.62
CLDN4-205ENST00000476494 RNF17Q9BXT8 1623 aaKnown RBP11.16□□□□□ -0.62
CLDN4-205ENST00000476494 CLTCQ00610 1675 aaKnown RBP11.15□□□□□ -0.62
CLDN4-205ENST00000476494 CDK13Q14004 1512 aaKnown RBP11.14□□□□□ -0.63
CLDN4-205ENST00000476494 FAM135BQ49AJ0 1406 aa11.14□□□□□ -0.63
CLDN4-205ENST00000476494 MYT1LQ9UL68 1186 aa11.13□□□□□ -0.63
CLDN4-205ENST00000476494 XIRP1Q702N8 1843 aaKnown RBP11.12□□□□□ -0.63
CLDN4-205ENST00000476494 KIF14Q15058 1648 aa11.11□□□□□ -0.63
CLDN4-205ENST00000476494 CDC42BPBQ9Y5S2 1711 aa11.11□□□□□ -0.63
CLDN4-205ENST00000476494 DEPDC5O75140 1603 aa11.1□□□□□ -0.63
CLDN4-205ENST00000476494 ANKLE2Q86XL3 938 aa11.1□□□□□ -0.63
CLDN4-205ENST00000476494 NPHP4O75161 1426 aaPredicted RBP11.09□□□□□ -0.63
CLDN4-205ENST00000476494 ARHGAP5Q13017 1502 aa11.09□□□□□ -0.63
CLDN4-205ENST00000476494 SYNMO15061 1565 aa11.09□□□□□ -0.63
CLDN4-205ENST00000476494 ABCC1P33527 1531 aa11.09□□□□□ -0.63
CLDN4-205ENST00000476494 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.08□□□□□ -0.64
CLDN4-205ENST00000476494 ITSN2Q9NZM3 1697 aa11.08□□□□□ -0.64
CLDN4-205ENST00000476494 PLXNC1O60486 1568 aa11.07□□□□□ -0.64
CLDN4-205ENST00000476494 IQGAP1P46940 1657 aa11.06□□□□□ -0.64
CLDN4-205ENST00000476494 FBXO31Q5XUX0 539 aaPredicted RBP11.05□□□□□ -0.64
CLDN4-205ENST00000476494 SAMD9LQ8IVG5 1584 aa11.04□□□□□ -0.64
CLDN4-205ENST00000476494 TRIM52Q96A61 297 aa11.04□□□□□ -0.64
CLDN4-205ENST00000476494 THEMISQ8N1K5 641 aaPredicted RBP11.03□□□□□ -0.64
CLDN4-205ENST00000476494 ZC3H13Q5T200 1668 aaKnown RBP11.03□□□□□ -0.64
CLDN4-205ENST00000476494 TNRQ92752 1358 aa11.03□□□□□ -0.64
CLDN4-205ENST00000476494 CDK12Q9NYV4 1490 aaPredicted RBP11.02□□□□□ -0.65
CLDN4-205ENST00000476494 GGT6Q6P531 493 aa11.02□□□□□ -0.65
CLDN4-205ENST00000476494 ROBO1Q9Y6N7 1651 aa11.01□□□□□ -0.65
CLDN4-205ENST00000476494 TROQ12816 1431 aaPredicted RBP11.01□□□□□ -0.65
CLDN4-205ENST00000476494 LRP6O75581 1613 aa11.01□□□□□ -0.65
CLDN4-205ENST00000476494 SETBP1Q9Y6X0 1596 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms