RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 SIGLEC1Q9BZZ2 1709 aa9.35□□□□□ -0.91
PTPN4-209ENST00000469511 RAPGEF2Q9Y4G8 1499 aa9.34□□□□□ -0.91
PTPN4-209ENST00000469511 FRMPD1Q5SYB0 1578 aa9.34□□□□□ -0.91
PTPN4-209ENST00000469511 CTTNBP2Q8WZ74 1663 aa9.34□□□□□ -0.91
PTPN4-209ENST00000469511 CAPN15O75808 1086 aa9.32□□□□□ -0.92
PTPN4-209ENST00000469511 CERKQ8TCT0 537 aa9.32□□□□□ -0.92
PTPN4-209ENST00000469511 P3H3Q8IVL6 736 aa9.31□□□□□ -0.92
PTPN4-209ENST00000469511 DISP3Q9P2K9 1392 aa9.31□□□□□ -0.92
PTPN4-209ENST00000469511 ATP10BO94823 1461 aa9.31□□□□□ -0.92
PTPN4-209ENST00000469511 ABCA9Q8IUA7 1624 aa9.31□□□□□ -0.92
PTPN4-209ENST00000469511 ARID4BQ4LE39 1312 aaPredicted RBP9.31□□□□□ -0.92
PTPN4-209ENST00000469511 SOCS7O14512 581 aa9.3□□□□□ -0.92
PTPN4-209ENST00000469511 POLA2Q14181 598 aa9.27□□□□□ -0.93
PTPN4-209ENST00000469511 RICTORQ6R327 1708 aa9.27□□□□□ -0.93
PTPN4-209ENST00000469511 STRCQ7RTU9 1775 aa9.25□□□□□ -0.93
PTPN4-209ENST00000469511 GOLGA3Q08378 1498 aa9.24□□□□□ -0.93
PTPN4-209ENST00000469511 NEO1Q92859 1461 aa9.24□□□□□ -0.93
PTPN4-209ENST00000469511 MLECQ14165 292 aa9.24□□□□□ -0.93
PTPN4-209ENST00000469511 ARHGEF40Q8TER5 1519 aa9.24□□□□□ -0.93
PTPN4-209ENST00000469511 YEATS2Q9ULM3 1422 aa9.23□□□□□ -0.93
PTPN4-209ENST00000469511 FER1L4A9Z1Z3 1794 aa9.23□□□□□ -0.93
PTPN4-209ENST00000469511 MKRN4PQ13434 485 aaPredicted RBP9.23□□□□□ -0.93
PTPN4-209ENST00000469511 CEBPAP49715 358 aaPredicted RBP9.22□□□□□ -0.93
PTPN4-209ENST00000469511 PHLDB1Q86UU1 1377 aa9.22□□□□□ -0.93
PTPN4-209ENST00000469511 SPATA31D1Q6ZQQ2 1576 aa9.2□□□□□ -0.94
PTPN4-209ENST00000469511 RAPGEF6Q8TEU7 1601 aa9.2□□□□□ -0.94
PTPN4-209ENST00000469511 DENND4BO75064 1496 aaPredicted RBP9.2□□□□□ -0.94
PTPN4-209ENST00000469511 AKNAQ7Z591 1439 aa9.19□□□□□ -0.94
PTPN4-209ENST00000469511 FHOD3Q2V2M9 1422 aa9.18□□□□□ -0.94
PTPN4-209ENST00000469511 TTC37Q6PGP7 1564 aa9.18□□□□□ -0.94
PTPN4-209ENST00000469511 HECW1Q76N89 1606 aa9.18□□□□□ -0.94
PTPN4-209ENST00000469511 PREX1Q8TCU6 1659 aa9.18□□□□□ -0.94
PTPN4-209ENST00000469511 PRXQ9BXM0 1461 aa9.18□□□□□ -0.94
PTPN4-209ENST00000469511 ZFYVE16Q7Z3T8 1539 aa9.17□□□□□ -0.94
PTPN4-209ENST00000469511 NUP153P49790 1475 aaKnown RBP9.17□□□□□ -0.94
PTPN4-209ENST00000469511 ZBTB12Q9Y330 459 aaPredicted RBP9.17□□□□□ -0.94
PTPN4-209ENST00000469511 SAMD9Q5K651 1589 aa9.16□□□□□ -0.94
PTPN4-209ENST00000469511 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.16□□□□□ -0.94
PTPN4-209ENST00000469511 FANCAO15360 1455 aa9.16□□□□□ -0.94
PTPN4-209ENST00000469511 ABCB7O75027 752 aa9.16□□□□□ -0.94
PTPN4-209ENST00000469511 RANGAP1P46060 587 aaPredicted RBP9.16□□□□□ -0.94
PTPN4-209ENST00000469511 ZMYM4Q5VZL5 1548 aa9.15□□□□□ -0.94
PTPN4-209ENST00000469511 SETD1BQ9UPS6 1966 aaKnown RBP9.14□□□□□ -0.95
PTPN4-209ENST00000469511 LTBP4Q8N2S1 1624 aa9.14□□□□□ -0.95
PTPN4-209ENST00000469511 SPDYE4A6NLX3 237 aa9.14□□□□□ -0.95
PTPN4-209ENST00000469511 DSG3P32926 999 aa9.14□□□□□ -0.95
PTPN4-209ENST00000469511 ARHGEF12Q9NZN5 1544 aa9.14□□□□□ -0.95
PTPN4-209ENST00000469511 POGZQ7Z3K3 1410 aa9.14□□□□□ -0.95
PTPN4-209ENST00000469511 EFCAB5A4FU69 1503 aa9.13□□□□□ -0.95
PTPN4-209ENST00000469511 C3P01024 1663 aa9.11□□□□□ -0.95
PTPN4-209ENST00000469511 PLEKHD1A6NEE1 506 aa9.11□□□□□ -0.95
PTPN4-209ENST00000469511 SCAPERQ9BY12 1400 aa9.11□□□□□ -0.95
PTPN4-209ENST00000469511 CFAP74Q9C0B2 1584 aa9.11□□□□□ -0.95
PTPN4-209ENST00000469511 ATP10AO60312 1499 aa9.09□□□□□ -0.95
PTPN4-209ENST00000469511 PROM2Q8N271 834 aa9.09□□□□□ -0.95
PTPN4-209ENST00000469511 CDK13Q14004 1512 aaKnown RBP9.09□□□□□ -0.95
PTPN4-209ENST00000469511 MAGI2Q86UL8 1455 aa9.08□□□□□ -0.96
PTPN4-209ENST00000469511 PTPRTO14522 1441 aa9.07□□□□□ -0.96
PTPN4-209ENST00000469511 C9orf84Q5VXU9 1444 aa9.07□□□□□ -0.96
PTPN4-209ENST00000469511 UHRF1BP1Q6BDS2 1440 aa9.07□□□□□ -0.96
PTPN4-209ENST00000469511 FAM9AQ8IZU1 332 aaPredicted RBP9.07□□□□□ -0.96
PTPN4-209ENST00000469511 AFAP1Q8N556 730 aa9.06□□□□□ -0.96
PTPN4-209ENST00000469511 PLCH2O75038 1416 aa9.05□□□□□ -0.96
PTPN4-209ENST00000469511 DIP2CQ9Y2E4 1556 aa9.05□□□□□ -0.96
PTPN4-209ENST00000469511 CACNB1Q02641 598 aaPredicted RBP9.05□□□□□ -0.96
PTPN4-209ENST00000469511 MYO5CQ9NQX4 1742 aa9.05□□□□□ -0.96
PTPN4-209ENST00000469511 KIF14Q15058 1648 aa9.05□□□□□ -0.96
PTPN4-209ENST00000469511 ZNF335Q9H4Z2 1342 aaPredicted RBP9.05□□□□□ -0.96
PTPN4-209ENST00000469511 AMER1Q5JTC6 1135 aaPredicted RBP9.04□□□□□ -0.96
PTPN4-209ENST00000469511 ABCA6Q8N139 1617 aa9.04□□□□□ -0.96
PTPN4-209ENST00000469511 NCOA1Q15788 1441 aa9.03□□□□□ -0.96
PTPN4-209ENST00000469511 NCKAP5LQ9HCH0 1330 aa9.03□□□□□ -0.96
PTPN4-209ENST00000469511 LRRIQ1Q96JM4 1722 aa9.02□□□□□ -0.96
PTPN4-209ENST00000469511 UBAP1LF5GYI3 381 aa9.02□□□□□ -0.97
PTPN4-209ENST00000469511 FBXO3Q9UK99 471 aa9.02□□□□□ -0.97
PTPN4-209ENST00000469511 CAMSAP1Q5T5Y3 1602 aa9.02□□□□□ -0.97
PTPN4-209ENST00000469511 KDM5CP41229 1560 aa9.01□□□□□ -0.97
PTPN4-209ENST00000469511 CDC42BPBQ9Y5S2 1711 aa9.01□□□□□ -0.97
PTPN4-209ENST00000469511 IQSEC2Q5JU85 1478 aa9.01□□□□□ -0.97
PTPN4-209ENST00000469511 EFCAB2Q5VUJ9 269 aa9□□□□□ -0.97
PTPN4-209ENST00000469511 MYT1LQ9UL68 1186 aa9□□□□□ -0.97
PTPN4-209ENST00000469511 MED1Q15648 1581 aaPredicted RBP8.99□□□□□ -0.97
PTPN4-209ENST00000469511 TRAPPC8Q9Y2L5 1435 aa8.99□□□□□ -0.97
PTPN4-209ENST00000469511 HSPA1LP34931 641 aa8.99□□□□□ -0.97
PTPN4-209ENST00000469511 ATP1B4Q9UN42 357 aaPredicted RBP8.99□□□□□ -0.97
PTPN4-209ENST00000469511 KIDINS220Q9ULH0 1771 aa8.99□□□□□ -0.97
PTPN4-209ENST00000469511 SUPT6HQ7KZ85 1726 aaKnown RBP8.98□□□□□ -0.97
PTPN4-209ENST00000469511 RTN4Q9NQC3 1192 aaKnown RBP8.98□□□□□ -0.97
PTPN4-209ENST00000469511 ZNF518AQ6AHZ1 1483 aa8.97□□□□□ -0.97
PTPN4-209ENST00000469511 ARHGAP5Q13017 1502 aa8.97□□□□□ -0.97
PTPN4-209ENST00000469511 REREQ9P2R6 1566 aa8.97□□□□□ -0.97
PTPN4-209ENST00000469511 ITSN2Q9NZM3 1697 aa8.96□□□□□ -0.98
PTPN4-209ENST00000469511 AGLP35573 1532 aa8.95□□□□□ -0.98
PTPN4-209ENST00000469511 CLTCQ00610 1675 aaKnown RBP8.95□□□□□ -0.98
PTPN4-209ENST00000469511 PIP4K2BP78356 416 aa8.95□□□□□ -0.98
PTPN4-209ENST00000469511 MLH3Q9UHC1 1453 aa8.95□□□□□ -0.98
PTPN4-209ENST00000469511 SPDYE2BA6NHP3 402 aa8.94□□□□□ -0.98
PTPN4-209ENST00000469511 SPDYE6P0CI01 402 aa8.94□□□□□ -0.98
PTPN4-209ENST00000469511 SPDYE2Q495Y8 402 aa8.94□□□□□ -0.98
PTPN4-209ENST00000469511 ZMYM3Q14202 1370 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms