RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 PRXQ9BXM0 1461 aa19.92■□□□□ 0.78
SQSTM1-206ENST00000466342 HECW1Q76N89 1606 aa19.88■□□□□ 0.77
SQSTM1-206ENST00000466342 PLEKHD1A6NEE1 506 aa19.88■□□□□ 0.77
SQSTM1-206ENST00000466342 SAMD9Q5K651 1589 aa19.87■□□□□ 0.77
SQSTM1-206ENST00000466342 ARHGEF12Q9NZN5 1544 aa19.87■□□□□ 0.77
SQSTM1-206ENST00000466342 CEBPAP49715 358 aaPredicted RBP19.87■□□□□ 0.77
SQSTM1-206ENST00000466342 NUP153P49790 1475 aaKnown RBP19.86■□□□□ 0.77
SQSTM1-206ENST00000466342 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.85■□□□□ 0.77
SQSTM1-206ENST00000466342 PTPRTO14522 1441 aa19.84■□□□□ 0.77
SQSTM1-206ENST00000466342 UHRF1BP1Q6BDS2 1440 aa19.83■□□□□ 0.76
SQSTM1-206ENST00000466342 ATP10AO60312 1499 aa19.82■□□□□ 0.76
SQSTM1-206ENST00000466342 CSRNP3Q8WYN3 585 aa19.82■□□□□ 0.76
SQSTM1-206ENST00000466342 LTBP4Q8N2S1 1624 aa19.8■□□□□ 0.76
SQSTM1-206ENST00000466342 IQSEC2Q5JU85 1478 aa19.8■□□□□ 0.76
SQSTM1-206ENST00000466342 SCAPERQ9BY12 1400 aa19.79■□□□□ 0.76
SQSTM1-206ENST00000466342 EEA1Q15075 1411 aa19.78■□□□□ 0.76
SQSTM1-206ENST00000466342 C9orf84Q5VXU9 1444 aa19.78■□□□□ 0.76
SQSTM1-206ENST00000466342 PLCH2O75038 1416 aa19.72■□□□□ 0.75
SQSTM1-206ENST00000466342 C3P01024 1663 aa19.71■□□□□ 0.75
SQSTM1-206ENST00000466342 EFCAB2Q5VUJ9 269 aa19.66■□□□□ 0.74
SQSTM1-206ENST00000466342 MYO5CQ9NQX4 1742 aa19.65■□□□□ 0.74
SQSTM1-206ENST00000466342 UBAP1LF5GYI3 381 aa19.64■□□□□ 0.73
SQSTM1-206ENST00000466342 RANGAP1P46060 587 aaPredicted RBP19.64■□□□□ 0.73
SQSTM1-206ENST00000466342 NCOA1Q15788 1441 aa19.64■□□□□ 0.73
SQSTM1-206ENST00000466342 TRAPPC8Q9Y2L5 1435 aa19.64■□□□□ 0.73
SQSTM1-206ENST00000466342 ZNF518AQ6AHZ1 1483 aa19.62■□□□□ 0.73
SQSTM1-206ENST00000466342 ESF1Q9H501 851 aaKnown RBP19.62■□□□□ 0.73
SQSTM1-206ENST00000466342 REREQ9P2R6 1566 aa19.61■□□□□ 0.73
SQSTM1-206ENST00000466342 AFAP1Q8N556 730 aa19.6■□□□□ 0.73
SQSTM1-206ENST00000466342 KDM5CP41229 1560 aa19.6■□□□□ 0.73
SQSTM1-206ENST00000466342 DIP2CQ9Y2E4 1556 aa19.59■□□□□ 0.73
SQSTM1-206ENST00000466342 MYT1LQ9UL68 1186 aa19.59■□□□□ 0.73
SQSTM1-206ENST00000466342 CDK13Q14004 1512 aaKnown RBP19.59■□□□□ 0.73
SQSTM1-206ENST00000466342 CAMSAP1Q5T5Y3 1602 aa19.58■□□□□ 0.72
SQSTM1-206ENST00000466342 AGLP35573 1532 aa19.56■□□□□ 0.72
SQSTM1-206ENST00000466342 ZNF335Q9H4Z2 1342 aaPredicted RBP19.55■□□□□ 0.72
SQSTM1-206ENST00000466342 ABCA6Q8N139 1617 aa19.54■□□□□ 0.72
SQSTM1-206ENST00000466342 NCKAP5LQ9HCH0 1330 aa19.52■□□□□ 0.72
SQSTM1-206ENST00000466342 MLH3Q9UHC1 1453 aa19.52■□□□□ 0.72
SQSTM1-206ENST00000466342 MED1Q15648 1581 aaPredicted RBP19.52■□□□□ 0.71
SQSTM1-206ENST00000466342 CNTLNQ9NXG0 1405 aa19.51■□□□□ 0.71
SQSTM1-206ENST00000466342 SUPT6HQ7KZ85 1726 aaKnown RBP19.5■□□□□ 0.71
SQSTM1-206ENST00000466342 ARHGAP5Q13017 1502 aa19.5■□□□□ 0.71
SQSTM1-206ENST00000466342 NPATQ14207 1427 aa19.5■□□□□ 0.71
SQSTM1-206ENST00000466342 CDK11AQ9UQ88 783 aaPredicted RBP19.49■□□□□ 0.71
SQSTM1-206ENST00000466342 MROH2AA6NES4 1674 aa19.49■□□□□ 0.71
SQSTM1-206ENST00000466342 KIF14Q15058 1648 aa19.48■□□□□ 0.71
SQSTM1-206ENST00000466342 HSPA1LP34931 641 aa19.47■□□□□ 0.71
SQSTM1-206ENST00000466342 PKD2Q13563 968 aa19.47■□□□□ 0.71
SQSTM1-206ENST00000466342 CDC42BPBQ9Y5S2 1711 aa19.47■□□□□ 0.71
SQSTM1-206ENST00000466342 ATP1B4Q9UN42 357 aaPredicted RBP19.45■□□□□ 0.7
SQSTM1-206ENST00000466342 KIDINS220Q9ULH0 1771 aa19.44■□□□□ 0.7
SQSTM1-206ENST00000466342 ZMYM3Q14202 1370 aa19.44■□□□□ 0.7
SQSTM1-206ENST00000466342 PLA2R1Q13018 1463 aa19.43■□□□□ 0.7
SQSTM1-206ENST00000466342 UBTFP17480 764 aaKnown RBP19.43■□□□□ 0.7
SQSTM1-206ENST00000466342 ZNF142P52746 1687 aaPredicted RBP19.43■□□□□ 0.7
SQSTM1-206ENST00000466342 SCAF1Q9H7N4 1312 aaKnown RBP19.42■□□□□ 0.7
SQSTM1-206ENST00000466342 PIP4K2BP78356 416 aa19.41■□□□□ 0.7
SQSTM1-206ENST00000466342 TCOF1Q13428 1488 aaKnown RBP19.41■□□□□ 0.7
SQSTM1-206ENST00000466342 TOM1O60784 492 aa19.4■□□□□ 0.7
SQSTM1-206ENST00000466342 TROQ12816 1431 aaPredicted RBP19.4■□□□□ 0.7
SQSTM1-206ENST00000466342 ITSN2Q9NZM3 1697 aa19.4■□□□□ 0.7
SQSTM1-206ENST00000466342 PHF23Q9BUL5 403 aaPredicted RBP19.39■□□□□ 0.69
SQSTM1-206ENST00000466342 PPP6R1Q9UPN7 881 aa19.39■□□□□ 0.69
SQSTM1-206ENST00000466342 MYO3AQ8NEV4 1616 aa19.38■□□□□ 0.69
SQSTM1-206ENST00000466342 CLIP1P30622 1438 aa19.37■□□□□ 0.69
SQSTM1-206ENST00000466342 CEP170BQ9Y4F5 1589 aaPredicted RBP19.36■□□□□ 0.69
SQSTM1-206ENST00000466342 ABCC1P33527 1531 aa19.36■□□□□ 0.69
SQSTM1-206ENST00000466342 FMN1Q68DA7 1419 aa19.36■□□□□ 0.69
SQSTM1-206ENST00000466342 EHMT2Q96KQ7 1210 aa19.36■□□□□ 0.69
SQSTM1-206ENST00000466342 CLTCQ00610 1675 aaKnown RBP19.36■□□□□ 0.69
SQSTM1-206ENST00000466342 PREX2Q70Z35 1606 aa19.35■□□□□ 0.69
SQSTM1-206ENST00000466342 LRRIQ1Q96JM4 1722 aa19.33■□□□□ 0.68
SQSTM1-206ENST00000466342 CPS1P31327 1500 aa19.31■□□□□ 0.68
SQSTM1-206ENST00000466342 PTPRKQ15262 1439 aa19.31■□□□□ 0.68
SQSTM1-206ENST00000466342 POLR1AO95602 1720 aaPredicted RBP19.28■□□□□ 0.68
SQSTM1-206ENST00000466342 CDC42BPAQ5VT25 1732 aa19.28■□□□□ 0.68
SQSTM1-206ENST00000466342 ARHGAP35Q9NRY4 1499 aa19.28■□□□□ 0.68
SQSTM1-206ENST00000466342 SHANK2Q9UPX8 1470 aa19.28■□□□□ 0.68
SQSTM1-206ENST00000466342 SAMD9LQ8IVG5 1584 aa19.27■□□□□ 0.68
SQSTM1-206ENST00000466342 DNMT1P26358 1616 aaKnown RBP19.27■□□□□ 0.68
SQSTM1-206ENST00000466342 A2ML1A8K2U0 1454 aa19.24■□□□□ 0.67
SQSTM1-206ENST00000466342 SPAG9O60271 1321 aaKnown RBP19.24■□□□□ 0.67
SQSTM1-206ENST00000466342 GGT6Q6P531 493 aa19.23■□□□□ 0.67
SQSTM1-206ENST00000466342 ALKQ9UM73 1620 aa19.22■□□□□ 0.67
SQSTM1-206ENST00000466342 PLXNC1O60486 1568 aa19.21■□□□□ 0.67
SQSTM1-206ENST00000466342 NEURL4Q96JN8 1562 aa19.21■□□□□ 0.67
SQSTM1-206ENST00000466342 ZNF777Q9ULD5 760 aaPredicted RBP19.2■□□□□ 0.66
SQSTM1-206ENST00000466342 HNRNPMP52272 730 aaKnown RBP eCLIP19.19■□□□□ 0.66
SQSTM1-206ENST00000466342 A2MP01023 1474 aa19.19■□□□□ 0.66
SQSTM1-206ENST00000466342 ATP7AQ04656 1500 aa19.19■□□□□ 0.66
SQSTM1-206ENST00000466342 RGS17Q9UGC6 210 aaPredicted RBP19.17■□□□□ 0.66
SQSTM1-206ENST00000466342 VWDEQ8N2E2 1590 aa19.17■□□□□ 0.66
SQSTM1-206ENST00000466342 SYCP2Q9BX26 1530 aa19.16■□□□□ 0.66
SQSTM1-206ENST00000466342 ANKLE2Q86XL3 938 aa19.15■□□□□ 0.66
SQSTM1-206ENST00000466342 INO80Q9ULG1 1556 aaPredicted RBP19.15■□□□□ 0.66
SQSTM1-206ENST00000466342 SENP3Q9H4L4 574 aaPredicted RBP19.14■□□□□ 0.65
SQSTM1-206ENST00000466342 ADGBQ8N7X0 1667 aa19.14■□□□□ 0.65
SQSTM1-206ENST00000466342 CCDC18Q5T9S5 1454 aa19.13■□□□□ 0.65
SQSTM1-206ENST00000466342 KIAA1107Q9UPP5 1409 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms