RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 ITSN2Q9NZM3 1697 aa17.53■□□□□ 0.4
HDAC4-208ENST00000463007 PLB1Q6P1J6 1458 aa17.53■□□□□ 0.4
HDAC4-208ENST00000463007 CROCC2H7BZ55 1655 aa17.52■□□□□ 0.4
HDAC4-208ENST00000463007 RBM19Q9Y4C8 960 aaKnown RBP17.52■□□□□ 0.4
HDAC4-208ENST00000463007 ROCK1Q13464 1354 aa17.52■□□□□ 0.4
HDAC4-208ENST00000463007 DAPK1P53355 1430 aa17.52■□□□□ 0.4
HDAC4-208ENST00000463007 KIF14Q15058 1648 aa17.52■□□□□ 0.39
HDAC4-208ENST00000463007 ANP32CO43423 234 aa17.52■□□□□ 0.39
HDAC4-208ENST00000463007 TROQ12816 1431 aaPredicted RBP17.51■□□□□ 0.39
HDAC4-208ENST00000463007 PPP1R15AO75807 674 aaPredicted RBP17.51■□□□□ 0.39
HDAC4-208ENST00000463007 ABCC5O15440 1437 aa17.5■□□□□ 0.39
HDAC4-208ENST00000463007 BCL11AQ9H165 835 aa17.48■□□□□ 0.39
HDAC4-208ENST00000463007 ADGBQ8N7X0 1667 aa17.48■□□□□ 0.39
HDAC4-208ENST00000463007 PRG4Q92954 1404 aaPredicted RBP17.47■□□□□ 0.39
HDAC4-208ENST00000463007 GPATCH8Q9UKJ3 1502 aaKnown RBP17.46■□□□□ 0.38
HDAC4-208ENST00000463007 CDC42BPAQ5VT25 1732 aa17.45■□□□□ 0.38
HDAC4-208ENST00000463007 CHMP7Q8WUX9 453 aaPredicted RBP17.45■□□□□ 0.38
HDAC4-208ENST00000463007 CARMIL2Q6F5E8 1435 aa17.44■□□□□ 0.38
HDAC4-208ENST00000463007 CAMSAP2Q08AD1 1489 aa17.44■□□□□ 0.38
HDAC4-208ENST00000463007 SHROOM2Q13796 1616 aa17.44■□□□□ 0.38
HDAC4-208ENST00000463007 HNRNPUQ00839 825 aaKnown RBP eCLIP17.44■□□□□ 0.38
HDAC4-208ENST00000463007 ABCC10Q5T3U5 1492 aa17.43■□□□□ 0.38
HDAC4-208ENST00000463007 ADGRL2O95490 1459 aa17.43■□□□□ 0.38
HDAC4-208ENST00000463007 CHD1O14646 1710 aa17.42■□□□□ 0.38
HDAC4-208ENST00000463007 SENP3-EIF4A1A0A087X0R7 540 aa17.42■□□□□ 0.38
HDAC4-208ENST00000463007 JPH4Q96JJ6 628 aa17.41■□□□□ 0.38
HDAC4-208ENST00000463007 RRP7BPQ9NSQ0 103 aa17.4■□□□□ 0.38
HDAC4-208ENST00000463007 ARID3CA6NKF2 412 aa17.39■□□□□ 0.37
HDAC4-208ENST00000463007 ATP10BO94823 1461 aa17.39■□□□□ 0.37
HDAC4-208ENST00000463007 ZNF644Q9H582 1327 aaPredicted RBP17.39■□□□□ 0.37
HDAC4-208ENST00000463007 TONSLQ96HA7 1378 aa17.38■□□□□ 0.37
HDAC4-208ENST00000463007 ERICH6Q7L0X2 663 aa17.37■□□□□ 0.37
HDAC4-208ENST00000463007 CHIC2Q9UKJ5 165 aa17.37■□□□□ 0.37
HDAC4-208ENST00000463007 CDK11AQ9UQ88 783 aaPredicted RBP17.36■□□□□ 0.37
HDAC4-208ENST00000463007 NCOA1Q15788 1441 aa17.35■□□□□ 0.37
HDAC4-208ENST00000463007 PZPP20742 1482 aa17.35■□□□□ 0.37
HDAC4-208ENST00000463007 TEX14Q8IWB6 1497 aa17.34■□□□□ 0.37
HDAC4-208ENST00000463007 SHANK2Q9UPX8 1470 aa17.34■□□□□ 0.37
HDAC4-208ENST00000463007 ANKRD30BQ9BXX2 1392 aa17.33■□□□□ 0.37
HDAC4-208ENST00000463007 RPRD2Q5VT52 1461 aaKnown RBP17.33■□□□□ 0.37
HDAC4-208ENST00000463007 MPHOSPH9Q99550 1183 aa17.32■□□□□ 0.36
HDAC4-208ENST00000463007 MSH5O43196 834 aa17.3■□□□□ 0.36
HDAC4-208ENST00000463007 ARHGEF5Q12774 1597 aa17.3■□□□□ 0.36
HDAC4-208ENST00000463007 CDC42BPBQ9Y5S2 1711 aa17.29■□□□□ 0.36
HDAC4-208ENST00000463007 PREX2Q70Z35 1606 aa17.29■□□□□ 0.36
HDAC4-208ENST00000463007 FAM9BQ8IZU0 186 aa17.29■□□□□ 0.36
HDAC4-208ENST00000463007 FBLN2P98095 1184 aa17.28■□□□□ 0.36
HDAC4-208ENST00000463007 KDM5DQ9BY66 1539 aa17.27■□□□□ 0.36
HDAC4-208ENST00000463007 POLR3GLQ9BT43 218 aa17.26■□□□□ 0.35
HDAC4-208ENST00000463007 MBD5Q9P267 1494 aa17.26■□□□□ 0.35
HDAC4-208ENST00000463007 POLR1AO95602 1720 aaPredicted RBP17.25■□□□□ 0.35
HDAC4-208ENST00000463007 SAMD9LQ8IVG5 1584 aa17.25■□□□□ 0.35
HDAC4-208ENST00000463007 CFDP1Q9UEE9 299 aaPredicted RBP17.24■□□□□ 0.35
HDAC4-208ENST00000463007 ERCC6L2Q5T890 1561 aa17.23■□□□□ 0.35
HDAC4-208ENST00000463007 CLASP1Q7Z460 1538 aa17.23■□□□□ 0.35
HDAC4-208ENST00000463007 PTPRGP23470 1445 aa17.22■□□□□ 0.35
HDAC4-208ENST00000463007 CCER2I3L3R5 266 aa17.22■□□□□ 0.35
HDAC4-208ENST00000463007 CCDC184Q52MB2 194 aa17.22■□□□□ 0.35
HDAC4-208ENST00000463007 B4GALNT3Q6L9W6 998 aa17.22■□□□□ 0.35
HDAC4-208ENST00000463007 FOXD1Q16676 465 aa17.21■□□□□ 0.35
HDAC4-208ENST00000463007 TTC37Q6PGP7 1564 aa17.2■□□□□ 0.34
HDAC4-208ENST00000463007 C9orf84Q5VXU9 1444 aa17.19■□□□□ 0.34
HDAC4-208ENST00000463007 ABCC2Q92887 1545 aa17.19■□□□□ 0.34
HDAC4-208ENST00000463007 MAST1Q9Y2H9 1570 aa17.19■□□□□ 0.34
HDAC4-208ENST00000463007 SPATA31E1Q6ZUB1 1445 aa17.19■□□□□ 0.34
HDAC4-208ENST00000463007 KIAA1107Q9UPP5 1409 aa17.18■□□□□ 0.34
HDAC4-208ENST00000463007 ANKRD30AQ9BXX3 1397 aa17.18■□□□□ 0.34
HDAC4-208ENST00000463007 L3MBTL2Q969R5 705 aa17.18■□□□□ 0.34
HDAC4-208ENST00000463007 ANKRD50Q9ULJ7 1429 aa17.17■□□□□ 0.34
HDAC4-208ENST00000463007 PLEKHD1A6NEE1 506 aa17.17■□□□□ 0.34
HDAC4-208ENST00000463007 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.17■□□□□ 0.34
HDAC4-208ENST00000463007 NBR1Q14596 966 aa17.14■□□□□ 0.33
HDAC4-208ENST00000463007 HSPA5P11021 654 aaKnown RBP17.14■□□□□ 0.33
HDAC4-208ENST00000463007 WASHC2AQ641Q2 1341 aa17.14■□□□□ 0.33
HDAC4-208ENST00000463007 MYO5CQ9NQX4 1742 aa17.13■□□□□ 0.33
HDAC4-208ENST00000463007 CCDC141Q6ZP82 1450 aa17.13■□□□□ 0.33
HDAC4-208ENST00000463007 NBPF8Q3BBV2 869 aa17.12■□□□□ 0.33
HDAC4-208ENST00000463007 UNC13BO14795 1591 aa17.11■□□□□ 0.33
HDAC4-208ENST00000463007 PLXNC1O60486 1568 aa17.11■□□□□ 0.33
HDAC4-208ENST00000463007 SLC4A1APQ9BWU0 796 aaKnown RBP17.11■□□□□ 0.33
HDAC4-208ENST00000463007 MRS2Q9HD23 443 aa17.11■□□□□ 0.33
HDAC4-208ENST00000463007 UHRF1BP1LA0JNW5 1464 aa17.11■□□□□ 0.33
HDAC4-208ENST00000463007 ZCCHC11Q5TAX3 1644 aaKnown RBP17.1■□□□□ 0.33
HDAC4-208ENST00000463007 ZNF326Q5BKZ1 582 aaKnown RBP17.1■□□□□ 0.33
HDAC4-208ENST00000463007 SYCP2Q9BX26 1530 aa17.09■□□□□ 0.33
HDAC4-208ENST00000463007 ARHGEF12Q9NZN5 1544 aa17.09■□□□□ 0.33
HDAC4-208ENST00000463007 UHRF1BP1Q6BDS2 1440 aa17.08■□□□□ 0.32
HDAC4-208ENST00000463007 ZNF777Q9ULD5 760 aaPredicted RBP17.08■□□□□ 0.32
HDAC4-208ENST00000463007 KDM5CP41229 1560 aa17.07■□□□□ 0.32
HDAC4-208ENST00000463007 CNTLNQ9NXG0 1405 aa17.06■□□□□ 0.32
HDAC4-208ENST00000463007 KIF15Q9NS87 1388 aa17.06■□□□□ 0.32
HDAC4-208ENST00000463007 EIF4G2P78344 907 aaKnown RBP eCLIP17.05■□□□□ 0.327e-7■■■■■ 38
HDAC4-208ENST00000463007 BCORL1Q5H9F3 1711 aa17.05■□□□□ 0.32
HDAC4-208ENST00000463007 C11orf95C9JLR9 678 aaPredicted RBP17.04■□□□□ 0.32
HDAC4-208ENST00000463007 MAGI2Q86UL8 1455 aa17.04■□□□□ 0.32
HDAC4-208ENST00000463007 CCDC7Q96M83 1385 aa17.04■□□□□ 0.32
HDAC4-208ENST00000463007 FAM135AQ9P2D6 1515 aa17.04■□□□□ 0.32
HDAC4-208ENST00000463007 IQGAP3Q86VI3 1631 aa17.03■□□□□ 0.32
HDAC4-208ENST00000463007 ARHGAP5Q13017 1502 aa17.02■□□□□ 0.31
HDAC4-208ENST00000463007 RALGAPBQ86X10 1494 aa17.02■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 107.7 ms