RNA–Protein interactions for RNA: ENST00000461347.5

NCL-207, Transcript of nucleolin, humanhuman

TSL 2

Gene NCL, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCL-207ENST00000461347 ZBED9Q6R2W3 1325 aa19.13■□□□□ 0.65
NCL-207ENST00000461347 RTN4Q9NQC3 1192 aaKnown RBP19.13■□□□□ 0.65
NCL-207ENST00000461347 NEFMP07197 916 aa19.12■□□□□ 0.65
NCL-207ENST00000461347 CC2D1BQ5T0F9 858 aaKnown RBP19.12■□□□□ 0.65
NCL-207ENST00000461347 POLA1P09884 1462 aaPredicted RBP19.11■□□□□ 0.65
NCL-207ENST00000461347 CCDC184Q52MB2 194 aa19.11■□□□□ 0.65
NCL-207ENST00000461347 PDS5BQ9NTI5 1447 aa19.11■□□□□ 0.65
NCL-207ENST00000461347 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.09■□□□□ 0.65
NCL-207ENST00000461347 CASKIN1Q8WXD9 1431 aa19.08■□□□□ 0.65
NCL-207ENST00000461347 MYOM3Q5VTT5 1437 aa19.08■□□□□ 0.65
NCL-207ENST00000461347 CCDC7Q96M83 1385 aa19.07■□□□□ 0.64
NCL-207ENST00000461347 KIF7Q2M1P5 1343 aa19.04■□□□□ 0.64
NCL-207ENST00000461347 RCAN3Q9UKA8 241 aa19.04■□□□□ 0.64
NCL-207ENST00000461347 MAPKBP1O60336 1514 aa19.04■□□□□ 0.64
NCL-207ENST00000461347 IPO9Q96P70 1041 aaKnown RBP19.04■□□□□ 0.64
NCL-207ENST00000461347 CUL7Q14999 1698 aa19.04■□□□□ 0.64
NCL-207ENST00000461347 CNTLNQ9NXG0 1405 aa19.04■□□□□ 0.64
NCL-207ENST00000461347 NCOA2Q15596 1464 aa19.03■□□□□ 0.64
NCL-207ENST00000461347 DDRGK1Q96HY6 314 aa19.03■□□□□ 0.64
NCL-207ENST00000461347 FYCO1Q9BQS8 1478 aa19.02■□□□□ 0.64
NCL-207ENST00000461347 MRC2Q9UBG0 1479 aa19.02■□□□□ 0.64
NCL-207ENST00000461347 PBRM1Q86U86 1689 aa19.02■□□□□ 0.64
NCL-207ENST00000461347 MSH5O43196 834 aa19.02■□□□□ 0.64
NCL-207ENST00000461347 RGS3P49796 1198 aa19.01■□□□□ 0.63
NCL-207ENST00000461347 PPM1GO15355 546 aaPredicted RBP19.01■□□□□ 0.63
NCL-207ENST00000461347 ARXQ96QS3 562 aa19■□□□□ 0.63
NCL-207ENST00000461347 NUP155O75694 1391 aa19■□□□□ 0.63
NCL-207ENST00000461347 HFM1A2PYH4 1435 aa19■□□□□ 0.63
NCL-207ENST00000461347 ZNF644Q9H582 1327 aaPredicted RBP18.99■□□□□ 0.63
NCL-207ENST00000461347 CHGAP10645 457 aaKnown RBP18.99■□□□□ 0.63
NCL-207ENST00000461347 KNSTRNQ9Y448 316 aa18.99■□□□□ 0.63
NCL-207ENST00000461347 ST20-MTHFSA0A0A6YYL1 179 aa18.98■□□□□ 0.63
NCL-207ENST00000461347 NBPF8Q3BBV2 869 aa18.97■□□□□ 0.63
NCL-207ENST00000461347 USP47Q96K76 1375 aa18.96■□□□□ 0.63
NCL-207ENST00000461347 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.95■□□□□ 0.62
NCL-207ENST00000461347 UPF2Q9HAU5 1272 aaKnown RBP18.95■□□□□ 0.62
NCL-207ENST00000461347 PCF11O94913 1555 aaKnown RBP18.95■□□□□ 0.62
NCL-207ENST00000461347 TCERG1O14776 1098 aaKnown RBP18.94■□□□□ 0.62
NCL-207ENST00000461347 RALBP1Q15311 655 aa18.94■□□□□ 0.62
NCL-207ENST00000461347 NAIPQ13075 1403 aa18.94■□□□□ 0.62
NCL-207ENST00000461347 EXOC6Q8TAG9 804 aa18.94■□□□□ 0.62
NCL-207ENST00000461347 KTN1Q86UP2 1357 aaKnown RBP18.93■□□□□ 0.62
NCL-207ENST00000461347 ROCK2O75116 1388 aaKnown RBP18.92■□□□□ 0.62
NCL-207ENST00000461347 C11orf95C9JLR9 678 aaPredicted RBP18.92■□□□□ 0.62
NCL-207ENST00000461347 CTTNBP2Q8WZ74 1663 aa18.92■□□□□ 0.62
NCL-207ENST00000461347 ANKRD30AQ9BXX3 1397 aa18.91■□□□□ 0.62
NCL-207ENST00000461347 MAP3K1Q13233 1512 aa18.91■□□□□ 0.62
NCL-207ENST00000461347 NLRP13Q86W25 1043 aa18.91■□□□□ 0.62
NCL-207ENST00000461347 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.9■□□□□ 0.621e-23■□□□□ 10.8
NCL-207ENST00000461347 GAPVD1Q14C86 1478 aa18.9■□□□□ 0.62
NCL-207ENST00000461347 ANO8Q9HCE9 1232 aaPredicted RBP18.89■□□□□ 0.61
NCL-207ENST00000461347 TMF1P82094 1093 aa18.89■□□□□ 0.61
NCL-207ENST00000461347 PLIN1O60240 522 aa18.89■□□□□ 0.61
NCL-207ENST00000461347 PAK3O75914 559 aaPredicted RBP18.88■□□□□ 0.61
NCL-207ENST00000461347 NEUROD2Q15784 382 aa18.88■□□□□ 0.61
NCL-207ENST00000461347 AKNAQ7Z591 1439 aa18.88■□□□□ 0.61
NCL-207ENST00000461347 RRP1P56182 461 aaKnown RBP18.87■□□□□ 0.61
NCL-207ENST00000461347 KIF15Q9NS87 1388 aa18.87■□□□□ 0.61
NCL-207ENST00000461347 MYBBP1AQ9BQG0 1328 aaKnown RBP18.86■□□□□ 0.61
NCL-207ENST00000461347 EFCAB5A4FU69 1503 aa18.86■□□□□ 0.61
NCL-207ENST00000461347 PDE4AP27815 886 aa18.86■□□□□ 0.61
NCL-207ENST00000461347 HNRNPMP52272 730 aaKnown RBP eCLIP18.84■□□□□ 0.61
NCL-207ENST00000461347 ADAMTS12P58397 1594 aa18.82■□□□□ 0.6
NCL-207ENST00000461347 CDCA8Q53HL2 280 aa18.82■□□□□ 0.6
NCL-207ENST00000461347 FRAT1Q92837 279 aaPredicted RBP18.81■□□□□ 0.6
NCL-207ENST00000461347 PDE3BQ13370 1112 aa18.81■□□□□ 0.6
NCL-207ENST00000461347 TNNT2P45379 298 aaPredicted RBP18.79■□□□□ 0.6
NCL-207ENST00000461347 IFT140Q96RY7 1462 aa18.79■□□□□ 0.6
NCL-207ENST00000461347 PTPRKQ15262 1439 aa18.79■□□□□ 0.6
NCL-207ENST00000461347 EIF4G3O43432 1585 aaKnown RBP18.79■□□□□ 0.6
NCL-207ENST00000461347 BECN1Q14457 450 aa18.79■□□□□ 0.6
NCL-207ENST00000461347 SENP3Q9H4L4 574 aaPredicted RBP18.79■□□□□ 0.6
NCL-207ENST00000461347 SLC4A3P48751 1232 aa18.77■□□□□ 0.6
NCL-207ENST00000461347 HSP90AA1P07900 732 aaKnown RBP18.77■□□□□ 0.6
NCL-207ENST00000461347 CRBNQ96SW2 442 aa18.76■□□□□ 0.59
NCL-207ENST00000461347 PANK3Q9H999 370 aa18.75■□□□□ 0.59
NCL-207ENST00000461347 EHBP1L1Q8N3D4 1523 aa18.75■□□□□ 0.59
NCL-207ENST00000461347 PNISRQ8TF01 805 aaKnown RBP18.74■□□□□ 0.59
NCL-207ENST00000461347 SAMD9Q5K651 1589 aa18.73■□□□□ 0.59
NCL-207ENST00000461347 CDCA7LQ96GN5 454 aa18.73■□□□□ 0.59
NCL-207ENST00000461347 AQRO60306 1485 aaKnown RBP eCLIP18.72■□□□□ 0.591e-14■■■□□ 18.7
NCL-207ENST00000461347 PTPN23Q9H3S7 1636 aa18.71■□□□□ 0.59
NCL-207ENST00000461347 CCDC146Q8IYE0 955 aa18.71■□□□□ 0.59
NCL-207ENST00000461347 CARMIL2Q6F5E8 1435 aa18.71■□□□□ 0.59
NCL-207ENST00000461347 JPH4Q96JJ6 628 aa18.7■□□□□ 0.58
NCL-207ENST00000461347 GOLGA2Q08379 1002 aa18.69■□□□□ 0.58
NCL-207ENST00000461347 SUPT6HQ7KZ85 1726 aaKnown RBP18.69■□□□□ 0.58
NCL-207ENST00000461347 SMG6Q86US8 1419 aaKnown RBP18.69■□□□□ 0.58
NCL-207ENST00000461347 NCOA1Q15788 1441 aa18.67■□□□□ 0.58
NCL-207ENST00000461347 MIA2Q96PC5 1412 aa18.67■□□□□ 0.58
NCL-207ENST00000461347 ARID4BQ4LE39 1312 aaPredicted RBP18.67■□□□□ 0.58
NCL-207ENST00000461347 ANKRD30BQ9BXX2 1392 aa18.66■□□□□ 0.58
NCL-207ENST00000461347 ANKRD50Q9ULJ7 1429 aa18.66■□□□□ 0.58
NCL-207ENST00000461347 CCDC144AA2RUR9 1427 aa18.66■□□□□ 0.58
NCL-207ENST00000461347 CDK13Q14004 1512 aaKnown RBP18.66■□□□□ 0.58
NCL-207ENST00000461347 SLKQ9H2G2 1235 aaPredicted RBP18.66■□□□□ 0.58
NCL-207ENST00000461347 MS4A1P11836 297 aa18.65■□□□□ 0.58
NCL-207ENST00000461347 USP35Q9P2H5 1018 aa18.65■□□□□ 0.58
NCL-207ENST00000461347 BRD4O60885 1362 aaPredicted RBP18.64■□□□□ 0.57
NCL-207ENST00000461347 FTSJ3Q8IY81 847 aaKnown RBP18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms