RNA–Protein interactions for RNA: ENST00000457422.6

CCDC43-202, Transcript of coiled-coil domain containing 43, humanhuman

TSL 1 (best) BASIC

Gene CCDC43, Length 2,058 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-202ENST00000457422 DENND4BO75064 1496 aaPredicted RBP23.93■■□□□ 1.42
CCDC43-202ENST00000457422 KIF14Q15058 1648 aa23.92■■□□□ 1.42
CCDC43-202ENST00000457422 ZNF644Q9H582 1327 aaPredicted RBP23.91■■□□□ 1.42
CCDC43-202ENST00000457422 GPATCH8Q9UKJ3 1502 aaKnown RBP23.9■■□□□ 1.42
CCDC43-202ENST00000457422 CAMSAP2Q08AD1 1489 aa23.9■■□□□ 1.42
CCDC43-202ENST00000457422 KDM5BQ9UGL1 1544 aa23.88■■□□□ 1.41
CCDC43-202ENST00000457422 CHD1O14646 1710 aa23.87■■□□□ 1.41
CCDC43-202ENST00000457422 ADGBQ8N7X0 1667 aa23.86■■□□□ 1.41
CCDC43-202ENST00000457422 TRIM52Q96A61 297 aa23.86■■□□□ 1.41
CCDC43-202ENST00000457422 CROCC2H7BZ55 1655 aa23.86■■□□□ 1.41
CCDC43-202ENST00000457422 ATP10BO94823 1461 aa23.84■■□□□ 1.41
CCDC43-202ENST00000457422 GTF3C3Q9Y5Q9 886 aa23.83■■□□□ 1.41
CCDC43-202ENST00000457422 CDC42BPAQ5VT25 1732 aa23.83■■□□□ 1.4
CCDC43-202ENST00000457422 CFDP1Q9UEE9 299 aaPredicted RBP23.82■■□□□ 1.4
CCDC43-202ENST00000457422 ADGRL2O95490 1459 aa23.81■■□□□ 1.4
CCDC43-202ENST00000457422 ABCC10Q5T3U5 1492 aa23.81■■□□□ 1.4
CCDC43-202ENST00000457422 SHROOM2Q13796 1616 aa23.81■■□□□ 1.4
CCDC43-202ENST00000457422 MPHOSPH9Q99550 1183 aa23.8■■□□□ 1.4
CCDC43-202ENST00000457422 PLEKHD1A6NEE1 506 aa23.77■■□□□ 1.4
CCDC43-202ENST00000457422 PTPRGP23470 1445 aa23.76■■□□□ 1.39
CCDC43-202ENST00000457422 NCOA1Q15788 1441 aa23.76■■□□□ 1.39
CCDC43-202ENST00000457422 HIRIP3Q9BW71 556 aaPredicted RBP23.72■■□□□ 1.39
CCDC43-202ENST00000457422 ZNF777Q9ULD5 760 aaPredicted RBP23.72■■□□□ 1.39
CCDC43-202ENST00000457422 SHANK2Q9UPX8 1470 aa23.72■■□□□ 1.39
CCDC43-202ENST00000457422 ANKRD30BQ9BXX2 1392 aa23.71■■□□□ 1.39
CCDC43-202ENST00000457422 DDX10Q13206 875 aaKnown RBP23.7■■□□□ 1.38
CCDC43-202ENST00000457422 RPRD2Q5VT52 1461 aaKnown RBP23.68■■□□□ 1.38
CCDC43-202ENST00000457422 FOXD1Q16676 465 aa23.68■■□□□ 1.38
CCDC43-202ENST00000457422 PZPP20742 1482 aa23.67■■□□□ 1.38
CCDC43-202ENST00000457422 ANKRD30AQ9BXX3 1397 aa23.67■■□□□ 1.38
CCDC43-202ENST00000457422 ARHGEF5Q12774 1597 aa23.65■■□□□ 1.38
CCDC43-202ENST00000457422 PREX2Q70Z35 1606 aa23.63■■□□□ 1.37
CCDC43-202ENST00000457422 TEX14Q8IWB6 1497 aa23.62■■□□□ 1.37
CCDC43-202ENST00000457422 SLC4A1APQ9BWU0 796 aaKnown RBP23.61■■□□□ 1.37
CCDC43-202ENST00000457422 C9orf84Q5VXU9 1444 aa23.61■■□□□ 1.37
CCDC43-202ENST00000457422 CDC42BPBQ9Y5S2 1711 aa23.61■■□□□ 1.37
CCDC43-202ENST00000457422 ERCC6L2Q5T890 1561 aa23.6■■□□□ 1.37
CCDC43-202ENST00000457422 ABCC2Q92887 1545 aa23.59■■□□□ 1.37
CCDC43-202ENST00000457422 ANKRD50Q9ULJ7 1429 aa23.59■■□□□ 1.37
CCDC43-202ENST00000457422 L3MBTL2Q969R5 705 aa23.58■■□□□ 1.37
CCDC43-202ENST00000457422 CLASP1Q7Z460 1538 aa23.57■■□□□ 1.36
CCDC43-202ENST00000457422 MBD5Q9P267 1494 aa23.57■■□□□ 1.36
CCDC43-202ENST00000457422 SAMD9LQ8IVG5 1584 aa23.56■■□□□ 1.36
CCDC43-202ENST00000457422 KIAA1107Q9UPP5 1409 aa23.55■■□□□ 1.36
CCDC43-202ENST00000457422 KDM5DQ9BY66 1539 aa23.55■■□□□ 1.36
CCDC43-202ENST00000457422 KCNH8Q96L42 1107 aa23.55■■□□□ 1.36
CCDC43-202ENST00000457422 CCDC141Q6ZP82 1450 aa23.52■■□□□ 1.36
CCDC43-202ENST00000457422 CCER2I3L3R5 266 aa23.51■■□□□ 1.35
CCDC43-202ENST00000457422 TTC37Q6PGP7 1564 aa23.51■■□□□ 1.35
CCDC43-202ENST00000457422 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.5■■□□□ 1.35
CCDC43-202ENST00000457422 TSPY4P0CV99 314 aa23.5■■□□□ 1.35
CCDC43-202ENST00000457422 TSPY10P0CW01 314 aa23.5■■□□□ 1.35
CCDC43-202ENST00000457422 HSPA5P11021 654 aaKnown RBP23.5■■□□□ 1.35
CCDC43-202ENST00000457422 ANP32CO43423 234 aa23.48■■□□□ 1.35
CCDC43-202ENST00000457422 HNRNPMP52272 730 aaKnown RBP eCLIP23.48■■□□□ 1.35
CCDC43-202ENST00000457422 EIF4G2P78344 907 aaKnown RBP eCLIP23.48■■□□□ 1.35
CCDC43-202ENST00000457422 RSPH4AQ5TD94 716 aa23.48■■□□□ 1.35
CCDC43-202ENST00000457422 MAST1Q9Y2H9 1570 aa23.47■■□□□ 1.35
CCDC43-202ENST00000457422 MYO5CQ9NQX4 1742 aa23.47■■□□□ 1.35
CCDC43-202ENST00000457422 UHRF1BP1LA0JNW5 1464 aa23.47■■□□□ 1.35
CCDC43-202ENST00000457422 KIF15Q9NS87 1388 aa23.46■■□□□ 1.35
CCDC43-202ENST00000457422 NBPF8Q3BBV2 869 aa23.44■■□□□ 1.34
CCDC43-202ENST00000457422 PKD2Q13563 968 aa23.43■■□□□ 1.34
CCDC43-202ENST00000457422 WASHC2AQ641Q2 1341 aa23.43■■□□□ 1.34
CCDC43-202ENST00000457422 ARHGAP5Q13017 1502 aa23.43■■□□□ 1.34
CCDC43-202ENST00000457422 ZCCHC11Q5TAX3 1644 aaKnown RBP23.43■■□□□ 1.34
CCDC43-202ENST00000457422 SYCP2Q9BX26 1530 aa23.42■■□□□ 1.34
CCDC43-202ENST00000457422 POLR1AO95602 1720 aaPredicted RBP23.42■■□□□ 1.34
CCDC43-202ENST00000457422 NUP155O75694 1391 aa23.41■■□□□ 1.34
CCDC43-202ENST00000457422 PLEKHH2Q8IVE3 1493 aa23.41■■□□□ 1.34
CCDC43-202ENST00000457422 SPATA31E1Q6ZUB1 1445 aa23.39■■□□□ 1.34
CCDC43-202ENST00000457422 PLXNC1O60486 1568 aa23.37■■□□□ 1.33
CCDC43-202ENST00000457422 UNC13BO14795 1591 aa23.34■■□□□ 1.33
CCDC43-202ENST00000457422 ARHGEF12Q9NZN5 1544 aa23.34■■□□□ 1.33
CCDC43-202ENST00000457422 CNTLNQ9NXG0 1405 aa23.33■■□□□ 1.33
CCDC43-202ENST00000457422 CCDC7Q96M83 1385 aa23.33■■□□□ 1.32
CCDC43-202ENST00000457422 FAM135AQ9P2D6 1515 aa23.32■■□□□ 1.32
CCDC43-202ENST00000457422 UHRF1BP1Q6BDS2 1440 aa23.32■■□□□ 1.32
CCDC43-202ENST00000457422 PLCH2O75038 1416 aa23.32■■□□□ 1.32
CCDC43-202ENST00000457422 PELP1Q8IZL8 1130 aaKnown RBP23.31■■□□□ 1.32
CCDC43-202ENST00000457422 C11orf95C9JLR9 678 aaPredicted RBP23.28■■□□□ 1.32
CCDC43-202ENST00000457422 ARAP3Q8WWN8 1544 aa23.27■■□□□ 1.32
CCDC43-202ENST00000457422 ABCC1P33527 1531 aa23.26■■□□□ 1.31
CCDC43-202ENST00000457422 RALGAPBQ86X10 1494 aa23.25■■□□□ 1.31
CCDC43-202ENST00000457422 DUOX2Q9NRD8 1548 aa23.25■■□□□ 1.31
CCDC43-202ENST00000457422 KDM5CP41229 1560 aa23.25■■□□□ 1.31
CCDC43-202ENST00000457422 IQGAP3Q86VI3 1631 aa23.25■■□□□ 1.31
CCDC43-202ENST00000457422 MAGI2Q86UL8 1455 aa23.23■■□□□ 1.31
CCDC43-202ENST00000457422 ERBINQ96RT1 1412 aa23.21■■□□□ 1.31
CCDC43-202ENST00000457422 ZNF326Q5BKZ1 582 aaKnown RBP23.21■■□□□ 1.31
CCDC43-202ENST00000457422 EFCAB2Q5VUJ9 269 aa23.21■■□□□ 1.31
CCDC43-202ENST00000457422 KIF7Q2M1P5 1343 aa23.2■■□□□ 1.3
CCDC43-202ENST00000457422 USP47Q96K76 1375 aa23.2■■□□□ 1.3
CCDC43-202ENST00000457422 SUPT16HQ9Y5B9 1047 aaKnown RBP23.18■■□□□ 1.3
CCDC43-202ENST00000457422 BCORL1Q5H9F3 1711 aa23.18■■□□□ 1.3
CCDC43-202ENST00000457422 WDR7Q9Y4E6 1490 aa23.15■■□□□ 1.3
CCDC43-202ENST00000457422 ARID4BQ4LE39 1312 aaPredicted RBP23.14■■□□□ 1.3
CCDC43-202ENST00000457422 CCDC144AA2RUR9 1427 aa23.13■■□□□ 1.29
CCDC43-202ENST00000457422 TRAPPC8Q9Y2L5 1435 aa23.13■■□□□ 1.29
CCDC43-202ENST00000457422 ATP10AO60312 1499 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms