RNA–Protein interactions for RNA: ENST00000447360.6

LRRC28-203, Transcript of leucine rich repeat containing 28, humanhuman

TSL 1 (best) BASIC

Gene LRRC28, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-203ENST00000447360 SAMD9Q5K651 1589 aa12.09□□□□□ -0.47
LRRC28-203ENST00000447360 TTC37Q6PGP7 1564 aa12.09□□□□□ -0.47
LRRC28-203ENST00000447360 CFAP74Q9C0B2 1584 aa12.09□□□□□ -0.47
LRRC28-203ENST00000447360 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.06□□□□□ -0.48
LRRC28-203ENST00000447360 ATP10AO60312 1499 aa12.06□□□□□ -0.48
LRRC28-203ENST00000447360 ARHGEF12Q9NZN5 1544 aa12.06□□□□□ -0.48
LRRC28-203ENST00000447360 SCAPERQ9BY12 1400 aa12.05□□□□□ -0.48
LRRC28-203ENST00000447360 CEBPAP49715 358 aaPredicted RBP12.05□□□□□ -0.48
LRRC28-203ENST00000447360 HECW1Q76N89 1606 aa12.04□□□□□ -0.48
LRRC28-203ENST00000447360 SIGLEC1Q9BZZ2 1709 aa12.04□□□□□ -0.48
LRRC28-203ENST00000447360 CSRNP3Q8WYN3 585 aa12.04□□□□□ -0.48
LRRC28-203ENST00000447360 PTPRTO14522 1441 aa12.03□□□□□ -0.48
LRRC28-203ENST00000447360 PLCH2O75038 1416 aa12.03□□□□□ -0.48
LRRC28-203ENST00000447360 C9orf84Q5VXU9 1444 aa12.03□□□□□ -0.48
LRRC28-203ENST00000447360 UHRF1BP1Q6BDS2 1440 aa12.03□□□□□ -0.48
LRRC28-203ENST00000447360 PREX1Q8TCU6 1659 aa12.03□□□□□ -0.48
LRRC28-203ENST00000447360 FER1L4A9Z1Z3 1794 aa12.02□□□□□ -0.48
LRRC28-203ENST00000447360 SPATA31D1Q6ZQQ2 1576 aa12.01□□□□□ -0.49
LRRC28-203ENST00000447360 EFCAB2Q5VUJ9 269 aa12.01□□□□□ -0.49
LRRC28-203ENST00000447360 IQSEC2Q5JU85 1478 aa12□□□□□ -0.49
LRRC28-203ENST00000447360 STRCQ7RTU9 1775 aa12□□□□□ -0.49
LRRC28-203ENST00000447360 RANGAP1P46060 587 aaPredicted RBP11.99□□□□□ -0.49
LRRC28-203ENST00000447360 SETD1BQ9UPS6 1966 aaKnown RBP11.97□□□□□ -0.49
LRRC28-203ENST00000447360 ZNF518AQ6AHZ1 1483 aa11.96□□□□□ -0.49
LRRC28-203ENST00000447360 AFAP1Q8N556 730 aa11.96□□□□□ -0.49
LRRC28-203ENST00000447360 LTBP4Q8N2S1 1624 aa11.96□□□□□ -0.5
LRRC28-203ENST00000447360 TRAPPC8Q9Y2L5 1435 aa11.95□□□□□ -0.5
LRRC28-203ENST00000447360 CDK11AQ9UQ88 783 aaPredicted RBP11.95□□□□□ -0.5
LRRC28-203ENST00000447360 PIAS4Q8N2W9 510 aaPredicted RBP11.94□□□□□ -0.5
LRRC28-203ENST00000447360 ESF1Q9H501 851 aaKnown RBP11.94□□□□□ -0.5
LRRC28-203ENST00000447360 NCOA1Q15788 1441 aa11.93□□□□□ -0.5
LRRC28-203ENST00000447360 CDK13Q14004 1512 aaKnown RBP11.92□□□□□ -0.5
LRRC28-203ENST00000447360 MYT1LQ9UL68 1186 aa11.92□□□□□ -0.5
LRRC28-203ENST00000447360 EEA1Q15075 1411 aa11.92□□□□□ -0.5
LRRC28-203ENST00000447360 KDM5CP41229 1560 aa11.92□□□□□ -0.5
LRRC28-203ENST00000447360 REREQ9P2R6 1566 aa11.92□□□□□ -0.5
LRRC28-203ENST00000447360 MLH3Q9UHC1 1453 aa11.9□□□□□ -0.5
LRRC28-203ENST00000447360 CNTLNQ9NXG0 1405 aa11.9□□□□□ -0.5
LRRC28-203ENST00000447360 UBAP1LF5GYI3 381 aa11.89□□□□□ -0.51
LRRC28-203ENST00000447360 AGLP35573 1532 aa11.89□□□□□ -0.51
LRRC28-203ENST00000447360 ATP1B4Q9UN42 357 aaPredicted RBP11.88□□□□□ -0.51
LRRC28-203ENST00000447360 DIP2CQ9Y2E4 1556 aa11.88□□□□□ -0.51
LRRC28-203ENST00000447360 NPATQ14207 1427 aa11.87□□□□□ -0.51
LRRC28-203ENST00000447360 FMN1Q68DA7 1419 aa11.87□□□□□ -0.51
LRRC28-203ENST00000447360 ARHGAP5Q13017 1502 aa11.87□□□□□ -0.51
LRRC28-203ENST00000447360 TROQ12816 1431 aaPredicted RBP11.86□□□□□ -0.51
LRRC28-203ENST00000447360 C3P01024 1663 aa11.86□□□□□ -0.51
LRRC28-203ENST00000447360 MYO5CQ9NQX4 1742 aa11.86□□□□□ -0.51
LRRC28-203ENST00000447360 ZNF335Q9H4Z2 1342 aaPredicted RBP11.86□□□□□ -0.51
LRRC28-203ENST00000447360 PKD2Q13563 968 aa11.85□□□□□ -0.51
LRRC28-203ENST00000447360 CLIP1P30622 1438 aa11.85□□□□□ -0.51
LRRC28-203ENST00000447360 NCKAP5LQ9HCH0 1330 aa11.85□□□□□ -0.51
LRRC28-203ENST00000447360 ZMYM3Q14202 1370 aa11.83□□□□□ -0.52
LRRC28-203ENST00000447360 KIF14Q15058 1648 aa11.83□□□□□ -0.52
LRRC28-203ENST00000447360 CAMSAP1Q5T5Y3 1602 aa11.83□□□□□ -0.52
LRRC28-203ENST00000447360 ABCA6Q8N139 1617 aa11.82□□□□□ -0.52
LRRC28-203ENST00000447360 PLA2R1Q13018 1463 aa11.82□□□□□ -0.52
LRRC28-203ENST00000447360 TCOF1Q13428 1488 aaKnown RBP11.79□□□□□ -0.52
LRRC28-203ENST00000447360 ABCC1P33527 1531 aa11.78□□□□□ -0.52
LRRC28-203ENST00000447360 TOM1O60784 492 aa11.78□□□□□ -0.52
LRRC28-203ENST00000447360 HSPA1LP34931 641 aa11.78□□□□□ -0.52
LRRC28-203ENST00000447360 ARHGAP35Q9NRY4 1499 aa11.77□□□□□ -0.52
LRRC28-203ENST00000447360 UBTFP17480 764 aaKnown RBP11.77□□□□□ -0.53
LRRC28-203ENST00000447360 MROH2AA6NES4 1674 aa11.76□□□□□ -0.53
LRRC28-203ENST00000447360 KIDINS220Q9ULH0 1771 aa11.75□□□□□ -0.53
LRRC28-203ENST00000447360 EHMT2Q96KQ7 1210 aa11.75□□□□□ -0.53
LRRC28-203ENST00000447360 SPAG9O60271 1321 aaKnown RBP11.75□□□□□ -0.53
LRRC28-203ENST00000447360 SCAF1Q9H7N4 1312 aaKnown RBP11.75□□□□□ -0.53
LRRC28-203ENST00000447360 PTPRKQ15262 1439 aa11.75□□□□□ -0.53
LRRC28-203ENST00000447360 CDC42BPBQ9Y5S2 1711 aa11.74□□□□□ -0.53
LRRC28-203ENST00000447360 PIP4K2BP78356 416 aa11.74□□□□□ -0.53
LRRC28-203ENST00000447360 MED1Q15648 1581 aaPredicted RBP11.74□□□□□ -0.53
LRRC28-203ENST00000447360 MSH5O43196 834 aa11.73□□□□□ -0.53
LRRC28-203ENST00000447360 PREX2Q70Z35 1606 aa11.73□□□□□ -0.53
LRRC28-203ENST00000447360 CEP170BQ9Y4F5 1589 aaPredicted RBP11.73□□□□□ -0.53
LRRC28-203ENST00000447360 SAMD9LQ8IVG5 1584 aa11.72□□□□□ -0.53
LRRC28-203ENST00000447360 ZNF142P52746 1687 aaPredicted RBP11.71□□□□□ -0.53
LRRC28-203ENST00000447360 ITSN2Q9NZM3 1697 aa11.71□□□□□ -0.53
LRRC28-203ENST00000447360 CPS1P31327 1500 aa11.71□□□□□ -0.53
LRRC28-203ENST00000447360 KCNA4P22459 653 aa11.71□□□□□ -0.53
LRRC28-203ENST00000447360 GGT6Q6P531 493 aa11.71□□□□□ -0.53
LRRC28-203ENST00000447360 ZNF777Q9ULD5 760 aaPredicted RBP11.71□□□□□ -0.53
LRRC28-203ENST00000447360 MYO3AQ8NEV4 1616 aa11.71□□□□□ -0.54
LRRC28-203ENST00000447360 CCDC18Q5T9S5 1454 aa11.7□□□□□ -0.54
LRRC28-203ENST00000447360 HNRNPMP52272 730 aaKnown RBP eCLIP11.7□□□□□ -0.54
LRRC28-203ENST00000447360 A2ML1A8K2U0 1454 aa11.7□□□□□ -0.54
LRRC28-203ENST00000447360 A2MP01023 1474 aa11.7□□□□□ -0.54
LRRC28-203ENST00000447360 KIAA1107Q9UPP5 1409 aa11.69□□□□□ -0.54
LRRC28-203ENST00000447360 SHANK2Q9UPX8 1470 aa11.69□□□□□ -0.54
LRRC28-203ENST00000447360 CASKIN1Q8WXD9 1431 aa11.69□□□□□ -0.54
LRRC28-203ENST00000447360 PLXNC1O60486 1568 aa11.68□□□□□ -0.54
LRRC28-203ENST00000447360 GPATCH8Q9UKJ3 1502 aaKnown RBP11.67□□□□□ -0.54
LRRC28-203ENST00000447360 PLEKHH2Q8IVE3 1493 aa11.67□□□□□ -0.54
LRRC28-203ENST00000447360 CLTCQ00610 1675 aaKnown RBP11.67□□□□□ -0.54
LRRC28-203ENST00000447360 ATP7AQ04656 1500 aa11.66□□□□□ -0.54
LRRC28-203ENST00000447360 SYCP2Q9BX26 1530 aa11.66□□□□□ -0.54
LRRC28-203ENST00000447360 ANKLE2Q86XL3 938 aa11.66□□□□□ -0.54
LRRC28-203ENST00000447360 CFDP1Q9UEE9 299 aaPredicted RBP11.66□□□□□ -0.54
LRRC28-203ENST00000447360 DNMT1P26358 1616 aaKnown RBP11.65□□□□□ -0.54
LRRC28-203ENST00000447360 THEMISQ8N1K5 641 aaPredicted RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 110.9 ms