RNA–Protein interactions for RNA: ENST00000441542.6

HDAC9-214, Transcript of histone deacetylase 9, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HDAC9, Length 3,210 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-214ENST00000441542 CADPSQ9ULU8 1353 aa9.99□□□□□ -0.81
HDAC9-214ENST00000441542 AEBP2Q6ZN18 517 aaPredicted RBP9.98□□□□□ -0.81
HDAC9-214ENST00000441542 RIMBP3CA6NJZ7 1639 aa9.98□□□□□ -0.81
HDAC9-214ENST00000441542 RIMBP3BA6NNM3 1639 aa9.98□□□□□ -0.81
HDAC9-214ENST00000441542 RIMBP3Q9UFD9 1639 aa9.98□□□□□ -0.81
HDAC9-214ENST00000441542 MRC2Q9UBG0 1479 aa9.98□□□□□ -0.81
HDAC9-214ENST00000441542 DCAF11Q8TEB1 546 aa9.97□□□□□ -0.81
HDAC9-214ENST00000441542 L3MBTL2Q969R5 705 aa9.97□□□□□ -0.81
HDAC9-214ENST00000441542 TCERG1O14776 1098 aaKnown RBP9.97□□□□□ -0.81
HDAC9-214ENST00000441542 BACH2Q9BYV9 841 aa9.97□□□□□ -0.81
HDAC9-214ENST00000441542 RGS3P49796 1198 aa9.96□□□□□ -0.81
HDAC9-214ENST00000441542 ARHGAP35Q9NRY4 1499 aa9.95□□□□□ -0.82
HDAC9-214ENST00000441542 C14orf37Q86TY3 774 aa9.95□□□□□ -0.82
HDAC9-214ENST00000441542 FBXO3Q9UK99 471 aa9.95□□□□□ -0.82
HDAC9-214ENST00000441542 CNTLNQ9NXG0 1405 aa9.95□□□□□ -0.82
HDAC9-214ENST00000441542 RSPH6AQ9H0K4 717 aa9.95□□□□□ -0.82
HDAC9-214ENST00000441542 ZMYND15Q9H091 742 aa9.94□□□□□ -0.82
HDAC9-214ENST00000441542 RRP1P56182 461 aaKnown RBP9.94□□□□□ -0.82
HDAC9-214ENST00000441542 CCDC7Q96M83 1385 aa9.93□□□□□ -0.82
HDAC9-214ENST00000441542 KIF7Q2M1P5 1343 aa9.93□□□□□ -0.82
HDAC9-214ENST00000441542 DDRGK1Q96HY6 314 aa9.93□□□□□ -0.82
HDAC9-214ENST00000441542 RCAN3Q9UKA8 241 aa9.93□□□□□ -0.82
HDAC9-214ENST00000441542 GLIPR1L2Q4G1C9 344 aa9.93□□□□□ -0.82
HDAC9-214ENST00000441542 PDS5BQ9NTI5 1447 aa9.93□□□□□ -0.82
HDAC9-214ENST00000441542 SLKQ9H2G2 1235 aaPredicted RBP9.92□□□□□ -0.82
HDAC9-214ENST00000441542 CDCA7LQ96GN5 454 aa9.92□□□□□ -0.82
HDAC9-214ENST00000441542 GZF1Q9H116 711 aaPredicted RBP9.92□□□□□ -0.82
HDAC9-214ENST00000441542 POGKQ9P215 609 aa9.91□□□□□ -0.82
HDAC9-214ENST00000441542 SMG6Q86US8 1419 aaKnown RBP9.91□□□□□ -0.82
HDAC9-214ENST00000441542 NBPF8Q3BBV2 869 aa9.91□□□□□ -0.82
HDAC9-214ENST00000441542 SPRYD3Q8NCJ5 442 aa9.91□□□□□ -0.82
HDAC9-214ENST00000441542 CRBNQ96SW2 442 aa9.91□□□□□ -0.82
HDAC9-214ENST00000441542 CCDC18Q5T9S5 1454 aa9.9□□□□□ -0.82
HDAC9-214ENST00000441542 RRAGDQ9NQL2 400 aaPredicted RBP9.9□□□□□ -0.82
HDAC9-214ENST00000441542 TAF7LQ5H9L4 462 aa9.9□□□□□ -0.82
HDAC9-214ENST00000441542 FHAD1B1AJZ9 1412 aa9.9□□□□□ -0.83
HDAC9-214ENST00000441542 AQRO60306 1485 aaKnown RBP eCLIP9.89□□□□□ -0.83
HDAC9-214ENST00000441542 PRXQ9BXM0 1461 aa9.89□□□□□ -0.83
HDAC9-214ENST00000441542 LRRC9Q6ZRR7 1453 aa9.89□□□□□ -0.83
HDAC9-214ENST00000441542 CLASP1Q7Z460 1538 aa9.88□□□□□ -0.83
HDAC9-214ENST00000441542 FAM43AQ8N2R8 423 aa9.88□□□□□ -0.83
HDAC9-214ENST00000441542 HSP90AA2PQ14568 343 aaPredicted RBP9.87□□□□□ -0.83
HDAC9-214ENST00000441542 KIF27Q86VH2 1401 aa9.87□□□□□ -0.83
HDAC9-214ENST00000441542 FBLN2P98095 1184 aa9.86□□□□□ -0.83
HDAC9-214ENST00000441542 MTUS2Q5JR59 1369 aa9.86□□□□□ -0.83
HDAC9-214ENST00000441542 C20orf194Q5TEA3 1177 aa9.86□□□□□ -0.83
HDAC9-214ENST00000441542 ARID3AQ99856 593 aa9.86□□□□□ -0.83
HDAC9-214ENST00000441542 FHOD3Q2V2M9 1422 aa9.86□□□□□ -0.83
HDAC9-214ENST00000441542 FANCD2Q9BXW9 1451 aa9.85□□□□□ -0.83
HDAC9-214ENST00000441542 PNNQ9H307 717 aaKnown RBP9.85□□□□□ -0.83
HDAC9-214ENST00000441542 BIVM-ERCC5R4GMW8 1640 aa9.85□□□□□ -0.83
HDAC9-214ENST00000441542 PNISRQ8TF01 805 aaKnown RBP9.84□□□□□ -0.83
HDAC9-214ENST00000441542 CHMP4AQ9BY43 222 aa9.84□□□□□ -0.83
HDAC9-214ENST00000441542 PTPRKQ15262 1439 aa9.84□□□□□ -0.83
HDAC9-214ENST00000441542 A0A0U1RQG5 324 aaPredicted RBP9.84□□□□□ -0.83
HDAC9-214ENST00000441542 HSP90AA1P07900 732 aaKnown RBP9.84□□□□□ -0.83
HDAC9-214ENST00000441542 MPHOSPH9Q99550 1183 aa9.84□□□□□ -0.83
HDAC9-214ENST00000441542 KDM2AQ9Y2K7 1162 aa9.84□□□□□ -0.83
HDAC9-214ENST00000441542 MS4A1P11836 297 aa9.83□□□□□ -0.84
HDAC9-214ENST00000441542 TIAM1Q13009 1591 aa9.83□□□□□ -0.84
HDAC9-214ENST00000441542 UACAQ9BZF9 1416 aa9.83□□□□□ -0.84
HDAC9-214ENST00000441542 FGD1P98174 961 aa9.82□□□□□ -0.84
HDAC9-214ENST00000441542 RNF123Q5XPI4 1314 aa9.82□□□□□ -0.84
HDAC9-214ENST00000441542 CFTRP13569 1480 aa9.82□□□□□ -0.84
HDAC9-214ENST00000441542 BRD2P25440 801 aaKnown RBP9.82□□□□□ -0.84
HDAC9-214ENST00000441542 SLC4A1APQ9BWU0 796 aaKnown RBP9.81□□□□□ -0.84
HDAC9-214ENST00000441542 PANK2Q9BZ23 570 aa9.81□□□□□ -0.84
HDAC9-214ENST00000441542 CC2D1BQ5T0F9 858 aaKnown RBP9.8□□□□□ -0.84
HDAC9-214ENST00000441542 NCOA1Q15788 1441 aa9.79□□□□□ -0.84
HDAC9-214ENST00000441542 SHROOM2Q13796 1616 aa9.79□□□□□ -0.84
HDAC9-214ENST00000441542 ERICH3Q5RHP9 1530 aa9.78□□□□□ -0.84
HDAC9-214ENST00000441542 FAM161AQ3B820 660 aa9.78□□□□□ -0.84
HDAC9-214ENST00000441542 CARMIL1Q5VZK9 1371 aa9.78□□□□□ -0.84
HDAC9-214ENST00000441542 FMN1Q68DA7 1419 aa9.78□□□□□ -0.84
HDAC9-214ENST00000441542 FGD6Q6ZV73 1430 aa9.78□□□□□ -0.84
HDAC9-214ENST00000441542 BCL11BQ9C0K0 894 aaPredicted RBP9.77□□□□□ -0.84
HDAC9-214ENST00000441542 NAIPQ13075 1403 aa9.77□□□□□ -0.85
HDAC9-214ENST00000441542 SAMD1Q6SPF0 538 aaPredicted RBP9.77□□□□□ -0.85
HDAC9-214ENST00000441542 NCOA2Q15596 1464 aa9.76□□□□□ -0.85
HDAC9-214ENST00000441542 TARBP1Q13395 1621 aaKnown RBP9.75□□□□□ -0.85
HDAC9-214ENST00000441542 HAP1P54257 671 aaPredicted RBP9.75□□□□□ -0.85
HDAC9-214ENST00000441542 C8orf34Q49A92 452 aa9.75□□□□□ -0.85
HDAC9-214ENST00000441542 CARD11Q9BXL7 1154 aa9.75□□□□□ -0.85
HDAC9-214ENST00000441542 IGF1RP08069 1367 aa9.74□□□□□ -0.85
HDAC9-214ENST00000441542 GOLGA6L3A6NEY3 463 aa9.74□□□□□ -0.85
HDAC9-214ENST00000441542 CNKSR2Q8WXI2 1034 aa9.74□□□□□ -0.85
HDAC9-214ENST00000441542 TDRD9Q8NDG6 1382 aaKnown RBP9.74□□□□□ -0.85
HDAC9-214ENST00000441542 HFM1A2PYH4 1435 aa9.73□□□□□ -0.85
HDAC9-214ENST00000441542 MAP3K1Q13233 1512 aa9.73□□□□□ -0.85
HDAC9-214ENST00000441542 L1TD1Q5T7N2 865 aaKnown RBP9.73□□□□□ -0.85
HDAC9-214ENST00000441542 SEC24BO95487 1268 aa9.73□□□□□ -0.85
HDAC9-214ENST00000441542 XRCC6P12956 609 aaKnown RBP eCLIP9.73□□□□□ -0.85
HDAC9-214ENST00000441542 TMEM132AQ24JP5 1023 aa9.73□□□□□ -0.85
HDAC9-214ENST00000441542 DHX29Q7Z478 1369 aaKnown RBP9.73□□□□□ -0.85
HDAC9-214ENST00000441542 USP47Q96K76 1375 aa9.73□□□□□ -0.85
HDAC9-214ENST00000441542 ST20-MTHFSA0A0A6YYL1 179 aa9.73□□□□□ -0.85
HDAC9-214ENST00000441542 ZBTB7CA1YPR0 619 aa9.73□□□□□ -0.85
HDAC9-214ENST00000441542 TOP2BQ02880 1626 aa9.72□□□□□ -0.85
HDAC9-214ENST00000441542 RBM10P98175 930 aaKnown RBP9.72□□□□□ -0.85
HDAC9-214ENST00000441542 DHX37Q8IY37 1157 aaKnown RBP9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms