RNA–Protein interactions for RNA: ENST00000435050.1

CLDN4-203, Transcript of claudin 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLDN4, Length 4,163 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-203ENST00000435050 MAGI1Q96QZ7 1491 aaPredicted RBP16.94■□□□□ 0.3
CLDN4-203ENST00000435050 THOC2Q8NI27 1593 aaKnown RBP16.94■□□□□ 0.3
CLDN4-203ENST00000435050 CFAP43Q8NDM7 1665 aa16.94■□□□□ 0.3
CLDN4-203ENST00000435050 HSPA5P11021 654 aaKnown RBP16.93■□□□□ 0.3
CLDN4-203ENST00000435050 WDR97A6NE52 1622 aa16.92■□□□□ 0.3
CLDN4-203ENST00000435050 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.92■□□□□ 0.3
CLDN4-203ENST00000435050 NPM1P06748 294 aaKnown RBP eCLIP16.92■□□□□ 0.3
CLDN4-203ENST00000435050 NUP155O75694 1391 aa16.91■□□□□ 0.3
CLDN4-203ENST00000435050 SAMD9Q5K651 1589 aa16.9■□□□□ 0.3
CLDN4-203ENST00000435050 ANKRD30AQ9BXX3 1397 aa16.9■□□□□ 0.3
CLDN4-203ENST00000435050 PTPN23Q9H3S7 1636 aa16.89■□□□□ 0.29
CLDN4-203ENST00000435050 MAPKBP1O60336 1514 aa16.89■□□□□ 0.29
CLDN4-203ENST00000435050 TROQ12816 1431 aaPredicted RBP16.89■□□□□ 0.29
CLDN4-203ENST00000435050 NUP153P49790 1475 aaKnown RBP16.87■□□□□ 0.29
CLDN4-203ENST00000435050 MAGI3Q5TCQ9 1506 aa16.87■□□□□ 0.29
CLDN4-203ENST00000435050 MIA2Q96PC5 1412 aa16.86■□□□□ 0.29
CLDN4-203ENST00000435050 DISP1Q96F81 1524 aa16.86■□□□□ 0.29
CLDN4-203ENST00000435050 FAM9BQ8IZU0 186 aa16.86■□□□□ 0.29
CLDN4-203ENST00000435050 HNRNPUQ00839 825 aaKnown RBP eCLIP16.85■□□□□ 0.29
CLDN4-203ENST00000435050 UGGT2Q9NYU1 1516 aa16.85■□□□□ 0.29
CLDN4-203ENST00000435050 SENP3-EIF4A1A0A087X0R7 540 aa16.85■□□□□ 0.29
CLDN4-203ENST00000435050 DCAF11Q8TEB1 546 aa16.84■□□□□ 0.29
CLDN4-203ENST00000435050 DAPK1P53355 1430 aa16.83■□□□□ 0.29
CLDN4-203ENST00000435050 KIAA0556O60303 1618 aa16.83■□□□□ 0.28
CLDN4-203ENST00000435050 CARD11Q9BXL7 1154 aa16.81■□□□□ 0.28
CLDN4-203ENST00000435050 ABCC5O15440 1437 aa16.8■□□□□ 0.28
CLDN4-203ENST00000435050 CHGAP10645 457 aaKnown RBP16.8■□□□□ 0.28
CLDN4-203ENST00000435050 ARHGEF11O15085 1522 aa16.79■□□□□ 0.28
CLDN4-203ENST00000435050 EFCAB2Q5VUJ9 269 aa16.79■□□□□ 0.28
CLDN4-203ENST00000435050 SENP3Q9H4L4 574 aaPredicted RBP16.78■□□□□ 0.28
CLDN4-203ENST00000435050 RAPGEF6Q8TEU7 1601 aa16.78■□□□□ 0.28
CLDN4-203ENST00000435050 MRS2Q9HD23 443 aa16.78■□□□□ 0.28
CLDN4-203ENST00000435050 CEP170Q5SW79 1584 aa16.76■□□□□ 0.27
CLDN4-203ENST00000435050 FKBP8Q14318 412 aa16.76■□□□□ 0.27
CLDN4-203ENST00000435050 ANKRD50Q9ULJ7 1429 aa16.76■□□□□ 0.27
CLDN4-203ENST00000435050 KIF15Q9NS87 1388 aa16.75■□□□□ 0.27
CLDN4-203ENST00000435050 NBPF8Q3BBV2 869 aa16.74■□□□□ 0.27
CLDN4-203ENST00000435050 CAMSAP2Q08AD1 1489 aa16.74■□□□□ 0.27
CLDN4-203ENST00000435050 ATP10BO94823 1461 aa16.73■□□□□ 0.27
CLDN4-203ENST00000435050 NUP160Q12769 1436 aa16.73■□□□□ 0.27
CLDN4-203ENST00000435050 GPATCH8Q9UKJ3 1502 aaKnown RBP16.72■□□□□ 0.27
CLDN4-203ENST00000435050 C9orf84Q5VXU9 1444 aa16.7■□□□□ 0.26
CLDN4-203ENST00000435050 AFAP1Q8N556 730 aa16.69■□□□□ 0.26
CLDN4-203ENST00000435050 IRX6P78412 446 aaPredicted RBP16.69■□□□□ 0.26
CLDN4-203ENST00000435050 SALL2Q9Y467 1007 aaPredicted RBP16.68■□□□□ 0.26
CLDN4-203ENST00000435050 SPAG9O60271 1321 aaKnown RBP16.68■□□□□ 0.26
CLDN4-203ENST00000435050 RSPH4AQ5TD94 716 aa16.67■□□□□ 0.26
CLDN4-203ENST00000435050 NCOA1Q15788 1441 aa16.67■□□□□ 0.26
CLDN4-203ENST00000435050 ARHGAP5Q13017 1502 aa16.67■□□□□ 0.26
CLDN4-203ENST00000435050 ROCK1Q13464 1354 aa16.67■□□□□ 0.26
CLDN4-203ENST00000435050 WASHC2AQ641Q2 1341 aa16.67■□□□□ 0.26
CLDN4-203ENST00000435050 AKNAQ7Z591 1439 aa16.66■□□□□ 0.26
CLDN4-203ENST00000435050 TCOF1Q13428 1488 aaKnown RBP16.66■□□□□ 0.26
CLDN4-203ENST00000435050 OSCARQ8IYS5 282 aa16.66■□□□□ 0.26
CLDN4-203ENST00000435050 KIF3BO15066 747 aa16.65■□□□□ 0.26
CLDN4-203ENST00000435050 CCER2I3L3R5 266 aa16.63■□□□□ 0.25
CLDN4-203ENST00000435050 TMC1Q8TDI8 760 aa16.63■□□□□ 0.25
CLDN4-203ENST00000435050 LRRIQ1Q96JM4 1722 aa16.63■□□□□ 0.25
CLDN4-203ENST00000435050 ANKRD30BQ9BXX2 1392 aa16.63■□□□□ 0.25
CLDN4-203ENST00000435050 GGT6Q6P531 493 aa16.62■□□□□ 0.25
CLDN4-203ENST00000435050 KIF14Q15058 1648 aa16.61■□□□□ 0.25
CLDN4-203ENST00000435050 ST20-MTHFSA0A0A6YYL1 179 aa16.61■□□□□ 0.25
CLDN4-203ENST00000435050 C11orf95C9JLR9 678 aaPredicted RBP16.6■□□□□ 0.25
CLDN4-203ENST00000435050 SUPT16HQ9Y5B9 1047 aaKnown RBP16.59■□□□□ 0.25
CLDN4-203ENST00000435050 ROCK2O75116 1388 aaKnown RBP16.59■□□□□ 0.25
CLDN4-203ENST00000435050 KDM6BO15054 1643 aa16.59■□□□□ 0.25
CLDN4-203ENST00000435050 KIAA1107Q9UPP5 1409 aa16.59■□□□□ 0.25
CLDN4-203ENST00000435050 USP47Q96K76 1375 aa16.58■□□□□ 0.24
CLDN4-203ENST00000435050 CYB5RLQ6IPT4 315 aa16.57■□□□□ 0.24
CLDN4-203ENST00000435050 CCDC144AA2RUR9 1427 aa16.57■□□□□ 0.24
CLDN4-203ENST00000435050 KIF7Q2M1P5 1343 aa16.57■□□□□ 0.24
CLDN4-203ENST00000435050 CCDC7Q96M83 1385 aa16.54■□□□□ 0.24
CLDN4-203ENST00000435050 CC2D1BQ5T0F9 858 aaKnown RBP16.52■□□□□ 0.24
CLDN4-203ENST00000435050 PRKRIP1Q9H875 184 aaPredicted RBP16.52■□□□□ 0.24
CLDN4-203ENST00000435050 CCDC141Q6ZP82 1450 aa16.52■□□□□ 0.23
CLDN4-203ENST00000435050 CCDC184Q52MB2 194 aa16.51■□□□□ 0.23
CLDN4-203ENST00000435050 NBPF1Q3BBV0 1214 aa16.5■□□□□ 0.23
CLDN4-203ENST00000435050 PLPPR3Q6T4P5 718 aa16.5■□□□□ 0.23
CLDN4-203ENST00000435050 DNMT1P26358 1616 aaKnown RBP16.5■□□□□ 0.23
CLDN4-203ENST00000435050 RPRD2Q5VT52 1461 aaKnown RBP16.5■□□□□ 0.23
CLDN4-203ENST00000435050 KANK1Q14678 1352 aa16.5■□□□□ 0.23
CLDN4-203ENST00000435050 ERCC6L2Q5T890 1561 aa16.47■□□□□ 0.23
CLDN4-203ENST00000435050 NUTM2DQ5VT03 806 aaPredicted RBP16.47■□□□□ 0.23
CLDN4-203ENST00000435050 STAG3Q9UJ98 1225 aa16.47■□□□□ 0.23
CLDN4-203ENST00000435050 ITSN2Q9NZM3 1697 aa16.47■□□□□ 0.23
CLDN4-203ENST00000435050 SCAPERQ9BY12 1400 aa16.46■□□□□ 0.23
CLDN4-203ENST00000435050 ABCA8O94911 1581 aa16.46■□□□□ 0.23
CLDN4-203ENST00000435050 PLEKHH2Q8IVE3 1493 aa16.45■□□□□ 0.22
CLDN4-203ENST00000435050 SYCP2Q9BX26 1530 aa16.45■□□□□ 0.22
CLDN4-203ENST00000435050 PZPP20742 1482 aa16.44■□□□□ 0.22
CLDN4-203ENST00000435050 CHD1O14646 1710 aa16.44■□□□□ 0.22
CLDN4-203ENST00000435050 MLECQ14165 292 aa16.44■□□□□ 0.22
CLDN4-203ENST00000435050 CNTLNQ9NXG0 1405 aa16.43■□□□□ 0.22
CLDN4-203ENST00000435050 TMF1P82094 1093 aa16.43■□□□□ 0.22
CLDN4-203ENST00000435050 ABCC10Q5T3U5 1492 aa16.42■□□□□ 0.22
CLDN4-203ENST00000435050 GCC2Q8IWJ2 1684 aa16.4■□□□□ 0.22
CLDN4-203ENST00000435050 WASHC2CQ9Y4E1 1318 aa16.39■□□□□ 0.22
CLDN4-203ENST00000435050 RAPGEF3O95398 923 aa16.39■□□□□ 0.21
CLDN4-203ENST00000435050 DENND4BO75064 1496 aaPredicted RBP16.39■□□□□ 0.21
CLDN4-203ENST00000435050 KNSTRNQ9Y448 316 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms