RNA–Protein interactions for RNA: ENST00000433822.1

COL17A1-204, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 537 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-204ENST00000433822 EMP3P54852 163 aa11.97□□□□□ -0.49
COL17A1-204ENST00000433822 IFNLR1Q8IU57 520 aaPredicted RBP11.97□□□□□ -0.49
COL17A1-204ENST00000433822 KIF21AQ7Z4S6 1674 aa11.97□□□□□ -0.49
COL17A1-204ENST00000433822 CABP2Q9NPB3 220 aa11.95□□□□□ -0.5
COL17A1-204ENST00000433822 CCDC88BA6NC98 1476 aa11.95□□□□□ -0.5
COL17A1-204ENST00000433822 G3V3G9 751 aa11.94□□□□□ -0.5
COL17A1-204ENST00000433822 DPY19L2Q6NUT2 758 aa11.93□□□□□ -0.5
COL17A1-204ENST00000433822 NCAPD3P42695 1498 aa11.92□□□□□ -0.5
COL17A1-204ENST00000433822 BOLA1Q9Y3E2 137 aa11.91□□□□□ -0.5
COL17A1-204ENST00000433822 LOC105371045A0A1W2PR82 267 aa11.9□□□□□ -0.5
COL17A1-204ENST00000433822 EEA1Q15075 1411 aa11.89□□□□□ -0.51
COL17A1-204ENST00000433822 HRCP23327 699 aa11.89□□□□□ -0.51
COL17A1-204ENST00000433822 HS3ST6Q96QI5 342 aa11.88□□□□□ -0.51
COL17A1-204ENST00000433822 FAM205CA6NFA0 338 aa11.87□□□□□ -0.51
COL17A1-204ENST00000433822 ATAD2BQ9ULI0 1458 aa11.86□□□□□ -0.51
COL17A1-204ENST00000433822 POTEB3A0JP26 581 aa11.83□□□□□ -0.52
COL17A1-204ENST00000433822 TRIM26Q12899 539 aaPredicted RBP11.83□□□□□ -0.52
COL17A1-204ENST00000433822 POTEBQ6S5H4 581 aa11.83□□□□□ -0.52
COL17A1-204ENST00000433822 HMGXB3Q12766 1538 aa11.82□□□□□ -0.52
COL17A1-204ENST00000433822 KRTAP3-3Q9BYR6 98 aa11.82□□□□□ -0.52
COL17A1-204ENST00000433822 KRTAP3-2Q9BYR7 98 aa11.82□□□□□ -0.52
COL17A1-204ENST00000433822 HOXB3P14651 431 aaPredicted RBP11.81□□□□□ -0.52
COL17A1-204ENST00000433822 ZNF710Q8N1W2 664 aa11.8□□□□□ -0.52
COL17A1-204ENST00000433822 RIMBP3CA6NJZ7 1639 aa11.79□□□□□ -0.52
COL17A1-204ENST00000433822 RIMBP3BA6NNM3 1639 aa11.79□□□□□ -0.52
COL17A1-204ENST00000433822 RIMBP3Q9UFD9 1639 aa11.79□□□□□ -0.52
COL17A1-204ENST00000433822 BAZ1BQ9UIG0 1483 aaKnown RBP11.79□□□□□ -0.52
COL17A1-204ENST00000433822 LAMC3Q9Y6N6 1575 aa11.79□□□□□ -0.52
COL17A1-204ENST00000433822 DOK7Q18PE1 504 aa11.78□□□□□ -0.52
COL17A1-204ENST00000433822 EFCAB3Q8N7B9 438 aa11.78□□□□□ -0.52
COL17A1-204ENST00000433822 PCGF6Q9BYE7 350 aa11.78□□□□□ -0.52
COL17A1-204ENST00000433822 HOXB1P14653 301 aaPredicted RBP11.77□□□□□ -0.53
COL17A1-204ENST00000433822 ABCC8Q09428 1581 aa11.75□□□□□ -0.53
COL17A1-204ENST00000433822 RIMBP2O15034 1052 aa11.73□□□□□ -0.53
COL17A1-204ENST00000433822 WRNQ14191 1432 aaPredicted RBP eCLIP11.73□□□□□ -0.53
COL17A1-204ENST00000433822 WDR62O43379 1518 aa11.71□□□□□ -0.53
COL17A1-204ENST00000433822 ERBB3P21860 1342 aa11.71□□□□□ -0.53
COL17A1-204ENST00000433822 TNIKQ9UKE5 1360 aa11.69□□□□□ -0.54
COL17A1-204ENST00000433822 SOX12O15370 315 aa11.69□□□□□ -0.54
COL17A1-204ENST00000433822 MICALL2Q8IY33 904 aa11.68□□□□□ -0.54
COL17A1-204ENST00000433822 MRC2Q9UBG0 1479 aa11.68□□□□□ -0.54
COL17A1-204ENST00000433822 RIOK3O14730 519 aaKnown RBP11.67□□□□□ -0.54
COL17A1-204ENST00000433822 KIF21BO75037 1637 aa11.67□□□□□ -0.54
COL17A1-204ENST00000433822 FAM9AQ8IZU1 332 aaPredicted RBP11.66□□□□□ -0.54
COL17A1-204ENST00000433822 PDS5BQ9NTI5 1447 aa11.66□□□□□ -0.54
COL17A1-204ENST00000433822 ZEB1P37275 1124 aaPredicted RBP11.65□□□□□ -0.54
COL17A1-204ENST00000433822 ZSWIM6Q9HCJ5 1215 aa11.65□□□□□ -0.54
COL17A1-204ENST00000433822 GOLGA3Q08378 1498 aa11.64□□□□□ -0.55
COL17A1-204ENST00000433822 TOP2BQ02880 1626 aa11.64□□□□□ -0.55
COL17A1-204ENST00000433822 BIVM-ERCC5R4GMW8 1640 aa11.64□□□□□ -0.55
COL17A1-204ENST00000433822 SYNJ1O43426 1573 aa11.63□□□□□ -0.55
COL17A1-204ENST00000433822 VGFO15240 615 aaPredicted RBP11.63□□□□□ -0.55
COL17A1-204ENST00000433822 TMEM92Q6UXU6 159 aa11.63□□□□□ -0.55
COL17A1-204ENST00000433822 ARHGEF11O15085 1522 aa11.63□□□□□ -0.55
COL17A1-204ENST00000433822 CEP164Q9UPV0 1460 aa11.63□□□□□ -0.55
COL17A1-204ENST00000433822 SOGA1O94964 1423 aa11.62□□□□□ -0.55
COL17A1-204ENST00000433822 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.62□□□□□ -0.55
COL17A1-204ENST00000433822 ZFP91Q96JP5 570 aaPredicted RBP11.62□□□□□ -0.55
COL17A1-204ENST00000433822 VARS2Q5ST30 1063 aaKnown RBP11.61□□□□□ -0.55
COL17A1-204ENST00000433822 RNF25Q96BH1 459 aaPredicted RBP11.61□□□□□ -0.55
COL17A1-204ENST00000433822 MS4A4AQ96JQ5 239 aa11.6□□□□□ -0.55
COL17A1-204ENST00000433822 CEP162Q5TB80 1403 aa11.6□□□□□ -0.55
COL17A1-204ENST00000433822 PHF8Q9UPP1 1060 aa11.59□□□□□ -0.55
COL17A1-204ENST00000433822 PRDM2Q13029 1718 aa11.58□□□□□ -0.56
COL17A1-204ENST00000433822 CFTRP13569 1480 aa11.57□□□□□ -0.56
COL17A1-204ENST00000433822 GPR153Q6NV75 609 aa11.56□□□□□ -0.56
COL17A1-204ENST00000433822 ZNF687Q8N1G0 1237 aa11.56□□□□□ -0.56
COL17A1-204ENST00000433822 RNF166Q96A37 237 aaPredicted RBP11.54□□□□□ -0.56
COL17A1-204ENST00000433822 TAOK2Q9UL54 1235 aa11.54□□□□□ -0.56
COL17A1-204ENST00000433822 ERICH3Q5RHP9 1530 aa11.54□□□□□ -0.56
COL17A1-204ENST00000433822 NLRP6P59044 892 aa11.53□□□□□ -0.56
COL17A1-204ENST00000433822 RUSC2Q8N2Y8 1516 aa11.53□□□□□ -0.56
COL17A1-204ENST00000433822 CADPSQ9ULU8 1353 aa11.51□□□□□ -0.57
COL17A1-204ENST00000433822 MYT1LQ9UL68 1186 aa11.5□□□□□ -0.57
COL17A1-204ENST00000433822 ARAP1Q96P48 1450 aa11.5□□□□□ -0.57
COL17A1-204ENST00000433822 ARSIQ5FYB1 569 aa11.49□□□□□ -0.57
COL17A1-204ENST00000433822 CYB5RLQ6IPT4 315 aa11.49□□□□□ -0.57
COL17A1-204ENST00000433822 PRXQ9BXM0 1461 aa11.47□□□□□ -0.57
COL17A1-204ENST00000433822 BCL11BQ9C0K0 894 aaPredicted RBP11.47□□□□□ -0.57
COL17A1-204ENST00000433822 PTGER2P43116 358 aa11.46□□□□□ -0.57
COL17A1-204ENST00000433822 FBXO22Q8NEZ5 403 aa11.46□□□□□ -0.57
COL17A1-204ENST00000433822 CUX1P39880 1505 aa11.45□□□□□ -0.58
COL17A1-204ENST00000433822 CHD1O14646 1710 aa11.45□□□□□ -0.58
COL17A1-204ENST00000433822 URB2Q14146 1524 aaKnown RBP11.45□□□□□ -0.58
COL17A1-204ENST00000433822 FANCD2Q9BXW9 1451 aa11.44□□□□□ -0.58
COL17A1-204ENST00000433822 STK24Q9Y6E0 443 aa11.44□□□□□ -0.58
COL17A1-204ENST00000433822 ZNF316A6NFI3 1004 aaPredicted RBP11.43□□□□□ -0.58
COL17A1-204ENST00000433822 CLIP1P30622 1438 aa11.43□□□□□ -0.58
COL17A1-204ENST00000433822 VPS8Q8N3P4 1428 aa11.43□□□□□ -0.58
COL17A1-204ENST00000433822 ZNF608Q9ULD9 1512 aaPredicted RBP11.42□□□□□ -0.58
COL17A1-204ENST00000433822 UBTFP17480 764 aaKnown RBP11.42□□□□□ -0.58
COL17A1-204ENST00000433822 KIF27Q86VH2 1401 aa11.42□□□□□ -0.58
COL17A1-204ENST00000433822 RAPGEF2Q9Y4G8 1499 aa11.4□□□□□ -0.58
COL17A1-204ENST00000433822 KHSRPQ92945 711 aaKnown RBP eCLIP11.4□□□□□ -0.58
COL17A1-204ENST00000433822 ANKRD13DQ6ZTN6 518 aa11.39□□□□□ -0.59
COL17A1-204ENST00000433822 MFRPQ9BY79 579 aa11.39□□□□□ -0.59
COL17A1-204ENST00000433822 STK25O00506 426 aa11.37□□□□□ -0.59
COL17A1-204ENST00000433822 KIF3CO14782 793 aa11.37□□□□□ -0.59
COL17A1-204ENST00000433822 C2orf72A6NCS6 295 aa11.35□□□□□ -0.59
COL17A1-204ENST00000433822 EIF4G3O43432 1585 aaKnown RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 107.6 ms