RNA–Protein interactions for RNA: ENST00000430617.6

ATG4B-212, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 3

Gene ATG4B, Length 623 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-212ENST00000430617 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.31■□□□□ 0.36
ATG4B-212ENST00000430617 MAGI2Q86UL8 1455 aa17.3■□□□□ 0.36
ATG4B-212ENST00000430617 C3P01024 1663 aa17.29■□□□□ 0.36
ATG4B-212ENST00000430617 NUP153P49790 1475 aaKnown RBP17.29■□□□□ 0.36
ATG4B-212ENST00000430617 PTPRTO14522 1441 aa17.29■□□□□ 0.36
ATG4B-212ENST00000430617 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.28■□□□□ 0.36
ATG4B-212ENST00000430617 HNRNPUL2Q1KMD3 747 aaKnown RBP17.28■□□□□ 0.36
ATG4B-212ENST00000430617 IQSEC2Q5JU85 1478 aa17.28■□□□□ 0.36
ATG4B-212ENST00000430617 UHRF1BP1Q6BDS2 1440 aa17.27■□□□□ 0.35
ATG4B-212ENST00000430617 PRXQ9BXM0 1461 aa17.24■□□□□ 0.35
ATG4B-212ENST00000430617 ATP10AO60312 1499 aa17.23■□□□□ 0.35
ATG4B-212ENST00000430617 FAM9AQ8IZU1 332 aaPredicted RBP17.22■□□□□ 0.35
ATG4B-212ENST00000430617 C9orf84Q5VXU9 1444 aa17.21■□□□□ 0.35
ATG4B-212ENST00000430617 SCAPERQ9BY12 1400 aa17.19■□□□□ 0.34
ATG4B-212ENST00000430617 MED1Q15648 1581 aaPredicted RBP17.19■□□□□ 0.34
ATG4B-212ENST00000430617 MYO5CQ9NQX4 1742 aa17.17■□□□□ 0.34
ATG4B-212ENST00000430617 PLEKHD1A6NEE1 506 aa17.16■□□□□ 0.34
ATG4B-212ENST00000430617 NCOA1Q15788 1441 aa17.15■□□□□ 0.34
ATG4B-212ENST00000430617 SUPT6HQ7KZ85 1726 aaKnown RBP17.15■□□□□ 0.34
ATG4B-212ENST00000430617 UBAP1LF5GYI3 381 aa17.13■□□□□ 0.33
ATG4B-212ENST00000430617 CAMSAP1Q5T5Y3 1602 aa17.13■□□□□ 0.33
ATG4B-212ENST00000430617 DIP2CQ9Y2E4 1556 aa17.12■□□□□ 0.33
ATG4B-212ENST00000430617 ABCA6Q8N139 1617 aa17.1■□□□□ 0.33
ATG4B-212ENST00000430617 PLCH2O75038 1416 aa17.1■□□□□ 0.33
ATG4B-212ENST00000430617 KDM5CP41229 1560 aa17.1■□□□□ 0.33
ATG4B-212ENST00000430617 ZNF335Q9H4Z2 1342 aaPredicted RBP17.09■□□□□ 0.33
ATG4B-212ENST00000430617 REREQ9P2R6 1566 aa17.08■□□□□ 0.32
ATG4B-212ENST00000430617 CDK13Q14004 1512 aaKnown RBP17.08■□□□□ 0.32
ATG4B-212ENST00000430617 TRAPPC8Q9Y2L5 1435 aa17.07■□□□□ 0.32
ATG4B-212ENST00000430617 ZNF518AQ6AHZ1 1483 aa17.05■□□□□ 0.32
ATG4B-212ENST00000430617 MROH2AA6NES4 1674 aa17.04■□□□□ 0.32
ATG4B-212ENST00000430617 KIF14Q15058 1648 aa17.03■□□□□ 0.32
ATG4B-212ENST00000430617 NCKAP5LQ9HCH0 1330 aa17.03■□□□□ 0.32
ATG4B-212ENST00000430617 HSPA1LP34931 641 aa17.03■□□□□ 0.32
ATG4B-212ENST00000430617 RANGAP1P46060 587 aaPredicted RBP17.03■□□□□ 0.32
ATG4B-212ENST00000430617 ZNF142P52746 1687 aaPredicted RBP17.03■□□□□ 0.32
ATG4B-212ENST00000430617 CDC42BPBQ9Y5S2 1711 aa17.01■□□□□ 0.31
ATG4B-212ENST00000430617 AFAP1Q8N556 730 aa17.01■□□□□ 0.31
ATG4B-212ENST00000430617 AGLP35573 1532 aa17.01■□□□□ 0.31
ATG4B-212ENST00000430617 MYO3AQ8NEV4 1616 aa16.99■□□□□ 0.31
ATG4B-212ENST00000430617 KIDINS220Q9ULH0 1771 aa16.99■□□□□ 0.31
ATG4B-212ENST00000430617 EFCAB2Q5VUJ9 269 aa16.98■□□□□ 0.31
ATG4B-212ENST00000430617 CLTCQ00610 1675 aaKnown RBP16.96■□□□□ 0.31
ATG4B-212ENST00000430617 ITSN2Q9NZM3 1697 aa16.96■□□□□ 0.31
ATG4B-212ENST00000430617 ARHGAP5Q13017 1502 aa16.96■□□□□ 0.3
ATG4B-212ENST00000430617 SCAF1Q9H7N4 1312 aaKnown RBP16.96■□□□□ 0.3
ATG4B-212ENST00000430617 MYT1LQ9UL68 1186 aa16.95■□□□□ 0.3
ATG4B-212ENST00000430617 LRRIQ1Q96JM4 1722 aa16.95■□□□□ 0.3
ATG4B-212ENST00000430617 TCOF1Q13428 1488 aaKnown RBP16.94■□□□□ 0.3
ATG4B-212ENST00000430617 MLH3Q9UHC1 1453 aa16.94■□□□□ 0.3
ATG4B-212ENST00000430617 PIP4K2BP78356 416 aa16.94■□□□□ 0.3
ATG4B-212ENST00000430617 ESF1Q9H501 851 aaKnown RBP16.94■□□□□ 0.3
ATG4B-212ENST00000430617 NPATQ14207 1427 aa16.94■□□□□ 0.3
ATG4B-212ENST00000430617 POLR1AO95602 1720 aaPredicted RBP16.93■□□□□ 0.3
ATG4B-212ENST00000430617 CNTLNQ9NXG0 1405 aa16.93■□□□□ 0.3
ATG4B-212ENST00000430617 CEP170BQ9Y4F5 1589 aaPredicted RBP16.93■□□□□ 0.3
ATG4B-212ENST00000430617 PLA2R1Q13018 1463 aa16.93■□□□□ 0.3
ATG4B-212ENST00000430617 ALKQ9UM73 1620 aa16.92■□□□□ 0.3
ATG4B-212ENST00000430617 PHF23Q9BUL5 403 aaPredicted RBP16.91■□□□□ 0.3
ATG4B-212ENST00000430617 ABCC1P33527 1531 aa16.88■□□□□ 0.29
ATG4B-212ENST00000430617 PKD2Q13563 968 aa16.88■□□□□ 0.29
ATG4B-212ENST00000430617 PREX2Q70Z35 1606 aa16.88■□□□□ 0.29
ATG4B-212ENST00000430617 ZMYM3Q14202 1370 aa16.88■□□□□ 0.29
ATG4B-212ENST00000430617 CSRNP3Q8WYN3 585 aa16.86■□□□□ 0.29
ATG4B-212ENST00000430617 CDC42BPAQ5VT25 1732 aa16.85■□□□□ 0.29
ATG4B-212ENST00000430617 PPP6R1Q9UPN7 881 aa16.85■□□□□ 0.29
ATG4B-212ENST00000430617 NEURL4Q96JN8 1562 aa16.85■□□□□ 0.29
ATG4B-212ENST00000430617 DNMT1P26358 1616 aaKnown RBP16.85■□□□□ 0.29
ATG4B-212ENST00000430617 TOM1O60784 492 aa16.84■□□□□ 0.29
ATG4B-212ENST00000430617 CPS1P31327 1500 aa16.84■□□□□ 0.29
ATG4B-212ENST00000430617 STRCP1A6NGW2 1772 aa16.82■□□□□ 0.28
ATG4B-212ENST00000430617 PTPRKQ15262 1439 aa16.81■□□□□ 0.28
ATG4B-212ENST00000430617 SHANK2Q9UPX8 1470 aa16.8■□□□□ 0.28
ATG4B-212ENST00000430617 TROQ12816 1431 aaPredicted RBP16.8■□□□□ 0.28
ATG4B-212ENST00000430617 RGS17Q9UGC6 210 aaPredicted RBP16.8■□□□□ 0.28
ATG4B-212ENST00000430617 SAMD9LQ8IVG5 1584 aa16.8■□□□□ 0.28
ATG4B-212ENST00000430617 ATP1B4Q9UN42 357 aaPredicted RBP16.79■□□□□ 0.28
ATG4B-212ENST00000430617 VWDEQ8N2E2 1590 aa16.79■□□□□ 0.28
ATG4B-212ENST00000430617 SENP3Q9H4L4 574 aaPredicted RBP16.78■□□□□ 0.28
ATG4B-212ENST00000430617 SETD1AO15047 1707 aaKnown RBP16.77■□□□□ 0.28
ATG4B-212ENST00000430617 PLXNC1O60486 1568 aa16.77■□□□□ 0.27
ATG4B-212ENST00000430617 A2ML1A8K2U0 1454 aa16.75■□□□□ 0.27
ATG4B-212ENST00000430617 CHIC1Q5VXU3 224 aa16.75■□□□□ 0.27
ATG4B-212ENST00000430617 CDK11AQ9UQ88 783 aaPredicted RBP16.74■□□□□ 0.27
ATG4B-212ENST00000430617 CLIP1P30622 1438 aa16.73■□□□□ 0.27
ATG4B-212ENST00000430617 INO80Q9ULG1 1556 aaPredicted RBP16.72■□□□□ 0.27
ATG4B-212ENST00000430617 XIRP1Q702N8 1843 aaKnown RBP16.71■□□□□ 0.27
ATG4B-212ENST00000430617 FMN1Q68DA7 1419 aa16.7■□□□□ 0.26
ATG4B-212ENST00000430617 ATP7AQ04656 1500 aa16.7■□□□□ 0.26
ATG4B-212ENST00000430617 SYCP2Q9BX26 1530 aa16.7■□□□□ 0.26
ATG4B-212ENST00000430617 RNF17Q9BXT8 1623 aaKnown RBP16.7■□□□□ 0.26
ATG4B-212ENST00000430617 ADGBQ8N7X0 1667 aa16.69■□□□□ 0.26
ATG4B-212ENST00000430617 IQGAP1P46940 1657 aa16.69■□□□□ 0.26
ATG4B-212ENST00000430617 ARHGAP35Q9NRY4 1499 aa16.67■□□□□ 0.26
ATG4B-212ENST00000430617 A2MP01023 1474 aa16.67■□□□□ 0.26
ATG4B-212ENST00000430617 DEPDC5O75140 1603 aa16.67■□□□□ 0.26
ATG4B-212ENST00000430617 GGT6Q6P531 493 aa16.66■□□□□ 0.26
ATG4B-212ENST00000430617 POTEAQ6S8J7 498 aa16.66■□□□□ 0.26
ATG4B-212ENST00000430617 LRRC7Q96NW7 1537 aa16.65■□□□□ 0.26
ATG4B-212ENST00000430617 SYNMO15061 1565 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms