RNA–Protein interactions for RNA: ENST00000428313.5

C9orf3-206, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 2,288 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-206ENST00000428313 DCAF11Q8TEB1 546 aa21.27■■□□□ 1
C9orf3-206ENST00000428313 AQRO60306 1485 aaKnown RBP eCLIP21.26■□□□□ 0.996e-7■■■□□ 16.6
C9orf3-206ENST00000428313 FYCO1Q9BQS8 1478 aa21.26■□□□□ 0.99
C9orf3-206ENST00000428313 EXOC6Q8TAG9 804 aa21.25■□□□□ 0.99
C9orf3-206ENST00000428313 EFCAB5A4FU69 1503 aa21.24■□□□□ 0.99
C9orf3-206ENST00000428313 DAXXQ9UER7 740 aaPredicted RBP21.23■□□□□ 0.99
C9orf3-206ENST00000428313 KIF7Q2M1P5 1343 aa21.23■□□□□ 0.99
C9orf3-206ENST00000428313 PTPRKQ15262 1439 aa21.23■□□□□ 0.99
C9orf3-206ENST00000428313 RRP9O43818 475 aaKnown RBP21.22■□□□□ 0.99
C9orf3-206ENST00000428313 SPATA31E1Q6ZUB1 1445 aa21.21■□□□□ 0.99
C9orf3-206ENST00000428313 DHX29Q7Z478 1369 aaKnown RBP21.21■□□□□ 0.99
C9orf3-206ENST00000428313 FGD5Q6ZNL6 1462 aa21.19■□□□□ 0.98
C9orf3-206ENST00000428313 RRAGDQ9NQL2 400 aaPredicted RBP21.17■□□□□ 0.98
C9orf3-206ENST00000428313 CASKIN1Q8WXD9 1431 aa21.17■□□□□ 0.98
C9orf3-206ENST00000428313 GCC2Q8IWJ2 1684 aa21.16■□□□□ 0.98
C9orf3-206ENST00000428313 FRAT2O75474 233 aaPredicted RBP21.16■□□□□ 0.98
C9orf3-206ENST00000428313 HSP90AA2PQ14568 343 aaPredicted RBP21.16■□□□□ 0.98
C9orf3-206ENST00000428313 CADPSQ9ULU8 1353 aa21.16■□□□□ 0.98
C9orf3-206ENST00000428313 DENND4BO75064 1496 aaPredicted RBP21.16■□□□□ 0.98
C9orf3-206ENST00000428313 PNISRQ8TF01 805 aaKnown RBP21.15■□□□□ 0.98
C9orf3-206ENST00000428313 LRPPRCP42704 1394 aaKnown RBP21.14■□□□□ 0.97
C9orf3-206ENST00000428313 L1TD1Q5T7N2 865 aaKnown RBP21.13■□□□□ 0.97
C9orf3-206ENST00000428313 RCAN3Q9UKA8 241 aa21.13■□□□□ 0.97
C9orf3-206ENST00000428313 PODXL2Q9NZ53 605 aa21.12■□□□□ 0.97
C9orf3-206ENST00000428313 MIA2Q96PC5 1412 aa21.12■□□□□ 0.97
C9orf3-206ENST00000428313 CC2D2AQ9P2K1 1620 aa21.12■□□□□ 0.97
C9orf3-206ENST00000428313 HSP90AA1P07900 732 aaKnown RBP21.1■□□□□ 0.97
C9orf3-206ENST00000428313 SLC4A3P48751 1232 aa21.09■□□□□ 0.97
C9orf3-206ENST00000428313 L3MBTL2Q969R5 705 aa21.09■□□□□ 0.97
C9orf3-206ENST00000428313 CUL7Q14999 1698 aa21.09■□□□□ 0.97
C9orf3-206ENST00000428313 PDE3BQ13370 1112 aa21.07■□□□□ 0.96
C9orf3-206ENST00000428313 CTTNBP2Q8WZ74 1663 aa21.06■□□□□ 0.96
C9orf3-206ENST00000428313 TEX14Q8IWB6 1497 aa21.05■□□□□ 0.96
C9orf3-206ENST00000428313 CLCN1P35523 988 aa21.05■□□□□ 0.96
C9orf3-206ENST00000428313 ARID4BQ4LE39 1312 aaPredicted RBP21.05■□□□□ 0.96
C9orf3-206ENST00000428313 NAP1L5Q96NT1 182 aaPredicted RBP21.04■□□□□ 0.96
C9orf3-206ENST00000428313 PNNQ9H307 717 aaKnown RBP21.04■□□□□ 0.96
C9orf3-206ENST00000428313 ABCA10Q8WWZ4 1543 aa21.04■□□□□ 0.96
C9orf3-206ENST00000428313 MYOM3Q5VTT5 1437 aa21.04■□□□□ 0.96
C9orf3-206ENST00000428313 FAM161AQ3B820 660 aa21.03■□□□□ 0.96
C9orf3-206ENST00000428313 RPRD2Q5VT52 1461 aaKnown RBP21.03■□□□□ 0.96
C9orf3-206ENST00000428313 TMC1Q8TDI8 760 aa21.02■□□□□ 0.96
C9orf3-206ENST00000428313 BRD4O60885 1362 aaPredicted RBP21.02■□□□□ 0.95
C9orf3-206ENST00000428313 KTN1Q86UP2 1357 aaKnown RBP21.01■□□□□ 0.95
C9orf3-206ENST00000428313 DNMBPQ6XZF7 1577 aa21.01■□□□□ 0.95
C9orf3-206ENST00000428313 NBPF8Q3BBV2 869 aa21.01■□□□□ 0.95
C9orf3-206ENST00000428313 THOC2Q8NI27 1593 aaKnown RBP21■□□□□ 0.95
C9orf3-206ENST00000428313 ROCK2O75116 1388 aaKnown RBP20.98■□□□□ 0.95
C9orf3-206ENST00000428313 FHOD3Q2V2M9 1422 aa20.98■□□□□ 0.95
C9orf3-206ENST00000428313 KDM2BQ8NHM5 1336 aa20.98■□□□□ 0.95
C9orf3-206ENST00000428313 C8orf34Q49A92 452 aa20.98■□□□□ 0.95
C9orf3-206ENST00000428313 DNAJC5BQ9UF47 199 aa20.98■□□□□ 0.95
C9orf3-206ENST00000428313 BCORL1Q5H9F3 1711 aa20.97■□□□□ 0.95
C9orf3-206ENST00000428313 POGKQ9P215 609 aa20.97■□□□□ 0.95
C9orf3-206ENST00000428313 ATP1B4Q9UN42 357 aaPredicted RBP20.97■□□□□ 0.95
C9orf3-206ENST00000428313 SUPT6HQ7KZ85 1726 aaKnown RBP20.96■□□□□ 0.95
C9orf3-206ENST00000428313 SNAPC4Q5SXM2 1469 aa20.96■□□□□ 0.95
C9orf3-206ENST00000428313 MTUS2Q5JR59 1369 aa20.95■□□□□ 0.94
C9orf3-206ENST00000428313 VIRMAQ69YN4 1812 aaKnown RBP20.95■□□□□ 0.94
C9orf3-206ENST00000428313 CENPQQ7L2Z9 268 aaPredicted RBP20.94■□□□□ 0.94
C9orf3-206ENST00000428313 MPHOSPH9Q99550 1183 aa20.94■□□□□ 0.94
C9orf3-206ENST00000428313 CENPJQ9HC77 1338 aaPredicted RBP20.94■□□□□ 0.94
C9orf3-206ENST00000428313 KIF15Q9NS87 1388 aa20.93■□□□□ 0.94
C9orf3-206ENST00000428313 PLEKHG5O94827 1062 aa20.93■□□□□ 0.94
C9orf3-206ENST00000428313 TCOF1Q13428 1488 aaKnown RBP20.92■□□□□ 0.94
C9orf3-206ENST00000428313 ANKRD30BQ9BXX2 1392 aa20.92■□□□□ 0.94
C9orf3-206ENST00000428313 SAMD9Q5K651 1589 aa20.92■□□□□ 0.94
C9orf3-206ENST00000428313 FANCD2Q9BXW9 1451 aa20.92■□□□□ 0.94
C9orf3-206ENST00000428313 KDM6BO15054 1643 aa20.92■□□□□ 0.94
C9orf3-206ENST00000428313 CRBNQ96SW2 442 aa20.92■□□□□ 0.94
C9orf3-206ENST00000428313 MYBBP1AQ9BQG0 1328 aaKnown RBP20.91■□□□□ 0.94
C9orf3-206ENST00000428313 SKAP1Q86WV1 359 aa20.9■□□□□ 0.94
C9orf3-206ENST00000428313 KIF21AQ7Z4S6 1674 aa20.9■□□□□ 0.94
C9orf3-206ENST00000428313 EHBP1L1Q8N3D4 1523 aa20.89■□□□□ 0.94
C9orf3-206ENST00000428313 RALBP1Q15311 655 aa20.88■□□□□ 0.93
C9orf3-206ENST00000428313 INSRP06213 1382 aa20.88■□□□□ 0.93
C9orf3-206ENST00000428313 ARHGEF11O15085 1522 aa20.87■□□□□ 0.93
C9orf3-206ENST00000428313 ZMYM4Q5VZL5 1548 aa20.87■□□□□ 0.93
C9orf3-206ENST00000428313 SENP3-EIF4A1A0A087X0R7 540 aa20.87■□□□□ 0.93
C9orf3-206ENST00000428313 FSD2A1L4K1 749 aa20.87■□□□□ 0.93
C9orf3-206ENST00000428313 UGGT2Q9NYU1 1516 aa20.87■□□□□ 0.93
C9orf3-206ENST00000428313 KDM5CP41229 1560 aa20.87■□□□□ 0.93
C9orf3-206ENST00000428313 P3H3Q8IVL6 736 aa20.87■□□□□ 0.93
C9orf3-206ENST00000428313 TOPBP1Q92547 1522 aa20.86■□□□□ 0.93
C9orf3-206ENST00000428313 POLA1P09884 1462 aaPredicted RBP20.86■□□□□ 0.93
C9orf3-206ENST00000428313 MBD5Q9P267 1494 aa20.86■□□□□ 0.93
C9orf3-206ENST00000428313 LRRIQ1Q96JM4 1722 aa20.85■□□□□ 0.93
C9orf3-206ENST00000428313 USP47Q96K76 1375 aa20.85■□□□□ 0.93
C9orf3-206ENST00000428313 XRCC6P12956 609 aaKnown RBP eCLIP20.85■□□□□ 0.93
C9orf3-206ENST00000428313 RRP7BPQ9NSQ0 103 aa20.85■□□□□ 0.93
C9orf3-206ENST00000428313 GRIN2BQ13224 1484 aa20.85■□□□□ 0.93
C9orf3-206ENST00000428313 KIF14Q15058 1648 aa20.84■□□□□ 0.93
C9orf3-206ENST00000428313 GOLGA6L3A6NEY3 463 aa20.84■□□□□ 0.93
C9orf3-206ENST00000428313 TPM2P07951 284 aa20.83■□□□□ 0.93
C9orf3-206ENST00000428313 PLEKHH2Q8IVE3 1493 aa20.83■□□□□ 0.92
C9orf3-206ENST00000428313 PDCL3Q9H2J4 239 aa20.83■□□□□ 0.92
C9orf3-206ENST00000428313 E9PCH4 1651 aa20.82■□□□□ 0.92
C9orf3-206ENST00000428313 CALD1Q05682 793 aaKnown RBP20.82■□□□□ 0.92
C9orf3-206ENST00000428313 BECN1Q14457 450 aa20.81■□□□□ 0.92
C9orf3-206ENST00000428313 PLIN1O60240 522 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms