RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 TNNT2P45379 298 aaPredicted RBP14.29□□□□□ -0.12
TCOF1-204ENST00000427724 TSHZ2Q9NRE2 1034 aa14.28□□□□□ -0.12
TCOF1-204ENST00000427724 NBR1Q14596 966 aa14.28□□□□□ -0.12
TCOF1-204ENST00000427724 CCDC18Q5T9S5 1454 aa14.28□□□□□ -0.12
TCOF1-204ENST00000427724 EIF4G2P78344 907 aaKnown RBP eCLIP14.27□□□□□ -0.12
TCOF1-204ENST00000427724 ARHGAP35Q9NRY4 1499 aa14.27□□□□□ -0.13
TCOF1-204ENST00000427724 LAMC3Q9Y6N6 1575 aa14.26□□□□□ -0.13
TCOF1-204ENST00000427724 CSB-PGBD3P0DP91 1061 aa14.25□□□□□ -0.13
TCOF1-204ENST00000427724 DHX57Q6P158 1386 aaKnown RBP14.25□□□□□ -0.13
TCOF1-204ENST00000427724 PHF23Q9BUL5 403 aaPredicted RBP14.24□□□□□ -0.13
TCOF1-204ENST00000427724 CDCA8Q53HL2 280 aa14.23□□□□□ -0.13
TCOF1-204ENST00000427724 DAXXQ9UER7 740 aaPredicted RBP14.23□□□□□ -0.13
TCOF1-204ENST00000427724 NPHP1O15259 732 aa14.22□□□□□ -0.13
TCOF1-204ENST00000427724 ZNF644Q9H582 1327 aaPredicted RBP14.22□□□□□ -0.13
TCOF1-204ENST00000427724 RAB3GAP2Q9H2M9 1393 aa14.22□□□□□ -0.13
TCOF1-204ENST00000427724 NGDNQ8NEJ9 315 aaKnown RBP14.22□□□□□ -0.13
TCOF1-204ENST00000427724 ZNF608Q9ULD9 1512 aaPredicted RBP14.22□□□□□ -0.13
TCOF1-204ENST00000427724 WDR43Q15061 677 aaKnown RBP eCLIP14.21□□□□□ -0.137e-6■■■■■ 27.3
TCOF1-204ENST00000427724 EIF5BO60841 1220 aaKnown RBP14.21□□□□□ -0.14
TCOF1-204ENST00000427724 KNSTRNQ9Y448 316 aa14.2□□□□□ -0.14
TCOF1-204ENST00000427724 MEX3CQ5U5Q3 659 aaKnown RBP14.19□□□□□ -0.14
TCOF1-204ENST00000427724 SENP3-EIF4A1A0A087X0R7 540 aa14.19□□□□□ -0.14
TCOF1-204ENST00000427724 MRS2Q9HD23 443 aa14.18□□□□□ -0.14
TCOF1-204ENST00000427724 SETD5Q9C0A6 1442 aa14.18□□□□□ -0.14
TCOF1-204ENST00000427724 RBM19Q9Y4C8 960 aaKnown RBP14.16□□□□□ -0.14
TCOF1-204ENST00000427724 MPHOSPH9Q99550 1183 aa14.15□□□□□ -0.14
TCOF1-204ENST00000427724 SYNJ2O15056 1496 aa14.15□□□□□ -0.14
TCOF1-204ENST00000427724 PIP4K2BP78356 416 aa14.15□□□□□ -0.14
TCOF1-204ENST00000427724 TRAK1Q9UPV9 953 aa14.14□□□□□ -0.15
TCOF1-204ENST00000427724 CFAP53Q96M91 514 aa14.13□□□□□ -0.15
TCOF1-204ENST00000427724 DNMBPQ6XZF7 1577 aa14.13□□□□□ -0.15
TCOF1-204ENST00000427724 CUX1P39880 1505 aa14.13□□□□□ -0.15
TCOF1-204ENST00000427724 TXNDC2Q86VQ3 553 aa14.12□□□□□ -0.15
TCOF1-204ENST00000427724 PRDM2Q13029 1718 aa14.12□□□□□ -0.15
TCOF1-204ENST00000427724 ANP32AP39687 249 aaKnown RBP14.12□□□□□ -0.15
TCOF1-204ENST00000427724 ATF3P18847 181 aa14.12□□□□□ -0.15
TCOF1-204ENST00000427724 URB2Q14146 1524 aaKnown RBP14.12□□□□□ -0.15
TCOF1-204ENST00000427724 KIF21BO75037 1637 aa14.11□□□□□ -0.15
TCOF1-204ENST00000427724 U2SURPO15042 1029 aaKnown RBP14.11□□□□□ -0.15
TCOF1-204ENST00000427724 NEUROD2Q15784 382 aa14.11□□□□□ -0.15
TCOF1-204ENST00000427724 SYNJ1O43426 1573 aa14.11□□□□□ -0.15
TCOF1-204ENST00000427724 SCAPERQ9BY12 1400 aa14.11□□□□□ -0.15
TCOF1-204ENST00000427724 PROSER2Q86WR7 435 aaPredicted RBP14.1□□□□□ -0.15
TCOF1-204ENST00000427724 VGFO15240 615 aaPredicted RBP14.1□□□□□ -0.15
TCOF1-204ENST00000427724 HDGFL2Q7Z4V5 671 aaPredicted RBP14.09□□□□□ -0.15
TCOF1-204ENST00000427724 CEBPAP49715 358 aaPredicted RBP14.08□□□□□ -0.15
TCOF1-204ENST00000427724 TMF1P82094 1093 aa14.08□□□□□ -0.16
TCOF1-204ENST00000427724 UACAQ9BZF9 1416 aa14.08□□□□□ -0.16
TCOF1-204ENST00000427724 THEMISQ8N1K5 641 aaPredicted RBP14.07□□□□□ -0.16
TCOF1-204ENST00000427724 LTV1Q96GA3 475 aaPredicted RBP14.07□□□□□ -0.16
TCOF1-204ENST00000427724 UNC13AQ9UPW8 1703 aa14.07□□□□□ -0.16
TCOF1-204ENST00000427724 CD109Q6YHK3 1445 aa14.07□□□□□ -0.16
TCOF1-204ENST00000427724 RTN4Q9NQC3 1192 aaKnown RBP14.06□□□□□ -0.16
TCOF1-204ENST00000427724 LAS1LQ9Y4W2 734 aaKnown RBP14.06□□□□□ -0.16
TCOF1-204ENST00000427724 TIMELESSQ9UNS1 1208 aa14.06□□□□□ -0.16
TCOF1-204ENST00000427724 EVA1CP58658 441 aa14.05□□□□□ -0.16
TCOF1-204ENST00000427724 NUDCQ9Y266 331 aa14.05□□□□□ -0.16
TCOF1-204ENST00000427724 CC2D1BQ5T0F9 858 aaKnown RBP14.05□□□□□ -0.16
TCOF1-204ENST00000427724 KIAA0586Q9BVV6 1533 aa14.04□□□□□ -0.16
TCOF1-204ENST00000427724 POGZQ7Z3K3 1410 aa14.04□□□□□ -0.16
TCOF1-204ENST00000427724 ZNF330Q9Y3S2 320 aaPredicted RBP14.04□□□□□ -0.16
TCOF1-204ENST00000427724 ARHGAP5Q13017 1502 aa14.03□□□□□ -0.16
TCOF1-204ENST00000427724 CCER2I3L3R5 266 aa14.03□□□□□ -0.16
TCOF1-204ENST00000427724 SLC26A8Q96RN1 970 aa14.03□□□□□ -0.16
TCOF1-204ENST00000427724 ANKLE2Q86XL3 938 aa14.03□□□□□ -0.16
TCOF1-204ENST00000427724 CCDC136Q96JN2 1154 aa14.03□□□□□ -0.16
TCOF1-204ENST00000427724 DEKP35659 375 aaKnown RBP14.03□□□□□ -0.16
TCOF1-204ENST00000427724 MINK1Q8N4C8 1332 aaPredicted RBP14.02□□□□□ -0.16
TCOF1-204ENST00000427724 MAGI1Q96QZ7 1491 aaPredicted RBP14.02□□□□□ -0.16
TCOF1-204ENST00000427724 PSME1Q06323 249 aa14.02□□□□□ -0.16
TCOF1-204ENST00000427724 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.01□□□□□ -0.17
TCOF1-204ENST00000427724 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.01□□□□□ -0.17
TCOF1-204ENST00000427724 NUTM2BA6NNL0 878 aaPredicted RBP14.01□□□□□ -0.17
TCOF1-204ENST00000427724 NUTM2EB1AL46 878 aaPredicted RBP14.01□□□□□ -0.17
TCOF1-204ENST00000427724 NUTM2AQ8IVF1 878 aaPredicted RBP14.01□□□□□ -0.17
TCOF1-204ENST00000427724 DNAJC5Q9H3Z4 198 aa14.01□□□□□ -0.17
TCOF1-204ENST00000427724 GRIN2AQ12879 1464 aa14.01□□□□□ -0.17
TCOF1-204ENST00000427724 ARAP1Q96P48 1450 aa14.01□□□□□ -0.17
TCOF1-204ENST00000427724 MAPK8IP3Q9UPT6 1336 aa14.01□□□□□ -0.17
TCOF1-204ENST00000427724 KIF15Q9NS87 1388 aa14□□□□□ -0.17
TCOF1-204ENST00000427724 MORC1Q86VD1 984 aa14□□□□□ -0.17
TCOF1-204ENST00000427724 HSPA5P11021 654 aaKnown RBP13.99□□□□□ -0.17
TCOF1-204ENST00000427724 ABCA10Q8WWZ4 1543 aa13.98□□□□□ -0.17
TCOF1-204ENST00000427724 AMPHP49418 695 aa13.98□□□□□ -0.17
TCOF1-204ENST00000427724 B4GALNT3Q6L9W6 998 aa13.96□□□□□ -0.17
TCOF1-204ENST00000427724 ROCK2O75116 1388 aaKnown RBP13.95□□□□□ -0.18
TCOF1-204ENST00000427724 MSH5O43196 834 aa13.95□□□□□ -0.18
TCOF1-204ENST00000427724 TERF2IPQ9NYB0 399 aa13.95□□□□□ -0.18
TCOF1-204ENST00000427724 CCDC144AA2RUR9 1427 aa13.94□□□□□ -0.18
TCOF1-204ENST00000427724 MYOM3Q5VTT5 1437 aa13.94□□□□□ -0.18
TCOF1-204ENST00000427724 L3MBTL2Q969R5 705 aa13.94□□□□□ -0.18
TCOF1-204ENST00000427724 USP35Q9P2H5 1018 aa13.94□□□□□ -0.18
TCOF1-204ENST00000427724 PLB1Q6P1J6 1458 aa13.94□□□□□ -0.18
TCOF1-204ENST00000427724 HSPA2P54652 639 aa13.93□□□□□ -0.18
TCOF1-204ENST00000427724 PHLDB1Q86UU1 1377 aa13.93□□□□□ -0.18
TCOF1-204ENST00000427724 TMEM132EQ6IEE7 984 aa13.93□□□□□ -0.18
TCOF1-204ENST00000427724 PPP4R2Q9NY27 417 aa13.92□□□□□ -0.18
TCOF1-204ENST00000427724 NUTM2GQ5VZR2 741 aa13.92□□□□□ -0.18
TCOF1-204ENST00000427724 ESCO1Q5FWF5 840 aa13.91□□□□□ -0.18
TCOF1-204ENST00000427724 PRXQ9BXM0 1461 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms