RNA–Protein interactions for RNA: ENST00000426763.3

RPL28-202, Transcript of ribosomal protein L28, humanhuman

TSL 1 (best)

Gene RPL28, Length 5,620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28-202ENST00000426763 STK26Q9P289 416 aa18.26■□□□□ 0.51
RPL28-202ENST00000426763 TNNT2P45379 298 aaPredicted RBP18.26■□□□□ 0.51
RPL28-202ENST00000426763 HSP90AA1P07900 732 aaKnown RBP18.24■□□□□ 0.51
RPL28-202ENST00000426763 PNNQ9H307 717 aaKnown RBP18.22■□□□□ 0.51
RPL28-202ENST00000426763 ROCK2O75116 1388 aaKnown RBP18.22■□□□□ 0.51
RPL28-202ENST00000426763 IFT140Q96RY7 1462 aa18.22■□□□□ 0.51
RPL28-202ENST00000426763 HSPA5P11021 654 aaKnown RBP18.21■□□□□ 0.51
RPL28-202ENST00000426763 NEUROD2Q15784 382 aa18.21■□□□□ 0.51
RPL28-202ENST00000426763 EID1Q9Y6B2 187 aa18.2■□□□□ 0.5
RPL28-202ENST00000426763 U2SURPO15042 1029 aaKnown RBP18.2■□□□□ 0.5
RPL28-202ENST00000426763 HDGFL2Q7Z4V5 671 aaPredicted RBP18.19■□□□□ 0.5
RPL28-202ENST00000426763 MORC1Q86VD1 984 aa18.18■□□□□ 0.5
RPL28-202ENST00000426763 EIF3AQ14152 1382 aaKnown RBP18.17■□□□□ 0.5
RPL28-202ENST00000426763 LAS1LQ9Y4W2 734 aaKnown RBP18.17■□□□□ 0.5
RPL28-202ENST00000426763 IRX6P78412 446 aaPredicted RBP18.16■□□□□ 0.5
RPL28-202ENST00000426763 TOPBP1Q92547 1522 aa18.15■□□□□ 0.5
RPL28-202ENST00000426763 ARXQ96QS3 562 aa18.14■□□□□ 0.49
RPL28-202ENST00000426763 SENP3-EIF4A1A0A087X0R7 540 aa18.14■□□□□ 0.49
RPL28-202ENST00000426763 SOX12O15370 315 aa18.13■□□□□ 0.49
RPL28-202ENST00000426763 BICRAQ9NZM4 1560 aa18.13■□□□□ 0.49
RPL28-202ENST00000426763 FAM69CQ0P6D2 419 aa18.12■□□□□ 0.49
RPL28-202ENST00000426763 SYNJ1O43426 1573 aa18.12■□□□□ 0.49
RPL28-202ENST00000426763 FTSJ3Q8IY81 847 aaKnown RBP18.12■□□□□ 0.49
RPL28-202ENST00000426763 L3MBTL2Q969R5 705 aa18.1■□□□□ 0.49
RPL28-202ENST00000426763 PRDM2Q13029 1718 aa18.1■□□□□ 0.49
RPL28-202ENST00000426763 MYOM3Q5VTT5 1437 aa18.09■□□□□ 0.49
RPL28-202ENST00000426763 KTN1Q86UP2 1357 aaKnown RBP18.09■□□□□ 0.49
RPL28-202ENST00000426763 CCDC144AA2RUR9 1427 aa18.09■□□□□ 0.49
RPL28-202ENST00000426763 POLA1P09884 1462 aaPredicted RBP18.08■□□□□ 0.49
RPL28-202ENST00000426763 ERICH3Q5RHP9 1530 aa18.08■□□□□ 0.49
RPL28-202ENST00000426763 CUX1P39880 1505 aa18.08■□□□□ 0.48
RPL28-202ENST00000426763 PRG4Q92954 1404 aaPredicted RBP18.07■□□□□ 0.48
RPL28-202ENST00000426763 UACAQ9BZF9 1416 aa18.07■□□□□ 0.48
RPL28-202ENST00000426763 TOP2BQ02880 1626 aa18.07■□□□□ 0.48
RPL28-202ENST00000426763 NUTM2DQ5VT03 806 aaPredicted RBP18.07■□□□□ 0.48
RPL28-202ENST00000426763 PAK3O75914 559 aaPredicted RBP18.06■□□□□ 0.48
RPL28-202ENST00000426763 DNMBPQ6XZF7 1577 aa18.06■□□□□ 0.48
RPL28-202ENST00000426763 KIF21BO75037 1637 aa18.05■□□□□ 0.48
RPL28-202ENST00000426763 CASKIN1Q8WXD9 1431 aa18.05■□□□□ 0.48
RPL28-202ENST00000426763 TERF2IPQ9NYB0 399 aa18.03■□□□□ 0.48
RPL28-202ENST00000426763 SYNJ2O15056 1496 aa18.03■□□□□ 0.48
RPL28-202ENST00000426763 CHMP4BQ9H444 224 aaKnown RBP18.02■□□□□ 0.48
RPL28-202ENST00000426763 MS4A1P11836 297 aa18.02■□□□□ 0.48
RPL28-202ENST00000426763 LAMC3Q9Y6N6 1575 aa18.02■□□□□ 0.48
RPL28-202ENST00000426763 SNAPC4Q5SXM2 1469 aa18.02■□□□□ 0.47
RPL28-202ENST00000426763 CCER2I3L3R5 266 aa18.02■□□□□ 0.47
RPL28-202ENST00000426763 FGD6Q6ZV73 1430 aa18.01■□□□□ 0.47
RPL28-202ENST00000426763 VGFO15240 615 aaPredicted RBP18■□□□□ 0.47
RPL28-202ENST00000426763 RALBP1Q15311 655 aa18■□□□□ 0.47
RPL28-202ENST00000426763 FRAT1Q92837 279 aaPredicted RBP18■□□□□ 0.47
RPL28-202ENST00000426763 SUPT16HQ9Y5B9 1047 aaKnown RBP17.99■□□□□ 0.47
RPL28-202ENST00000426763 RTF1Q92541 710 aaKnown RBP17.99■□□□□ 0.47
RPL28-202ENST00000426763 LRRC9Q6ZRR7 1453 aa17.97■□□□□ 0.47
RPL28-202ENST00000426763 FYCO1Q9BQS8 1478 aa17.97■□□□□ 0.47
RPL28-202ENST00000426763 EFCAB5A4FU69 1503 aa17.96■□□□□ 0.47
RPL28-202ENST00000426763 NPHP1O15259 732 aa17.96■□□□□ 0.47
RPL28-202ENST00000426763 NGDNQ8NEJ9 315 aaKnown RBP17.96■□□□□ 0.47
RPL28-202ENST00000426763 TRAK1Q9UPV9 953 aa17.96■□□□□ 0.47
RPL28-202ENST00000426763 KIF15Q9NS87 1388 aa17.96■□□□□ 0.47
RPL28-202ENST00000426763 CSB-PGBD3P0DP91 1061 aa17.96■□□□□ 0.47
RPL28-202ENST00000426763 ZNF644Q9H582 1327 aaPredicted RBP17.95■□□□□ 0.46
RPL28-202ENST00000426763 DHX57Q6P158 1386 aaKnown RBP17.94■□□□□ 0.46
RPL28-202ENST00000426763 NCOA2Q15596 1464 aa17.94■□□□□ 0.46
RPL28-202ENST00000426763 DNAJC5BQ9UF47 199 aa17.94■□□□□ 0.46
RPL28-202ENST00000426763 U2AF1L5P0DN76 240 aaPredicted RBP17.93■□□□□ 0.46
RPL28-202ENST00000426763 U2AF1Q01081 240 aaKnown RBP eCLIP17.93■□□□□ 0.46
RPL28-202ENST00000426763 ARHGAP5Q13017 1502 aa17.93■□□□□ 0.46
RPL28-202ENST00000426763 PRXQ9BXM0 1461 aa17.93■□□□□ 0.46
RPL28-202ENST00000426763 ANP32BQ92688 251 aaKnown RBP17.93■□□□□ 0.46
RPL28-202ENST00000426763 CASC1Q6TDU7 716 aa17.92■□□□□ 0.46
RPL28-202ENST00000426763 EIF5BO60841 1220 aaKnown RBP17.91■□□□□ 0.46
RPL28-202ENST00000426763 PHLDB1Q86UU1 1377 aa17.91■□□□□ 0.46
RPL28-202ENST00000426763 CALD1Q05682 793 aaKnown RBP17.9■□□□□ 0.46
RPL28-202ENST00000426763 ARAP1Q96P48 1450 aa17.88■□□□□ 0.45
RPL28-202ENST00000426763 ABCA10Q8WWZ4 1543 aa17.88■□□□□ 0.45
RPL28-202ENST00000426763 OS9Q13438 667 aaPredicted RBP17.87■□□□□ 0.45
RPL28-202ENST00000426763 ANKRD50Q9ULJ7 1429 aa17.87■□□□□ 0.45
RPL28-202ENST00000426763 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.86■□□□□ 0.45
RPL28-202ENST00000426763 ST20-MTHFSA0A0A6YYL1 179 aa17.86■□□□□ 0.45
RPL28-202ENST00000426763 NUTM2FA1L443 756 aa17.86■□□□□ 0.45
RPL28-202ENST00000426763 BECN1Q14457 450 aa17.85■□□□□ 0.45
RPL28-202ENST00000426763 EVC2Q86UK5 1308 aa17.85■□□□□ 0.45
RPL28-202ENST00000426763 PPP4R2Q9NY27 417 aa17.84■□□□□ 0.45
RPL28-202ENST00000426763 KIAA0586Q9BVV6 1533 aa17.84■□□□□ 0.45
RPL28-202ENST00000426763 AFAP1Q8N556 730 aa17.84■□□□□ 0.45
RPL28-202ENST00000426763 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.83■□□□□ 0.44
RPL28-202ENST00000426763 AMPHP49418 695 aa17.83■□□□□ 0.44
RPL28-202ENST00000426763 DDRGK1Q96HY6 314 aa17.82■□□□□ 0.44
RPL28-202ENST00000426763 STAC3Q96MF2 364 aa17.82■□□□□ 0.44
RPL28-202ENST00000426763 EHBP1L1Q8N3D4 1523 aa17.82■□□□□ 0.44
RPL28-202ENST00000426763 HECW1Q76N89 1606 aa17.81■□□□□ 0.44
RPL28-202ENST00000426763 PLEKHH2Q8IVE3 1493 aa17.81■□□□□ 0.44
RPL28-202ENST00000426763 PEG3Q9GZU2 1588 aa17.81■□□□□ 0.44
RPL28-202ENST00000426763 NLRP13Q86W25 1043 aa17.81■□□□□ 0.44
RPL28-202ENST00000426763 CHMP4AQ9BY43 222 aa17.81■□□□□ 0.44
RPL28-202ENST00000426763 CCDC9Q9Y3X0 531 aaKnown RBP17.8■□□□□ 0.44
RPL28-202ENST00000426763 TROQ12816 1431 aaPredicted RBP17.8■□□□□ 0.44
RPL28-202ENST00000426763 IPO8O15397 1037 aaKnown RBP17.8■□□□□ 0.44
RPL28-202ENST00000426763 USP47Q96K76 1375 aa17.78■□□□□ 0.44
RPL28-202ENST00000426763 MINK1Q8N4C8 1332 aaPredicted RBP17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms