RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 DAPK1P53355 1430 aa13.91□□□□□ -0.18
SS18-203ENST00000415083 L3MBTL2Q969R5 705 aa13.9□□□□□ -0.18
SS18-203ENST00000415083 ANKRD30BQ9BXX2 1392 aa13.9□□□□□ -0.18
SS18-203ENST00000415083 POLR1AO95602 1720 aaPredicted RBP13.89□□□□□ -0.19
SS18-203ENST00000415083 MRC2Q9UBG0 1479 aa13.89□□□□□ -0.19
SS18-203ENST00000415083 NCOA1Q15788 1441 aa13.88□□□□□ -0.19
SS18-203ENST00000415083 SPATA31E1Q6ZUB1 1445 aa13.88□□□□□ -0.19
SS18-203ENST00000415083 RPRD2Q5VT52 1461 aaKnown RBP13.87□□□□□ -0.19
SS18-203ENST00000415083 RAPGEF6Q8TEU7 1601 aa13.87□□□□□ -0.19
SS18-203ENST00000415083 PZPP20742 1482 aa13.86□□□□□ -0.19
SS18-203ENST00000415083 CNTLNQ9NXG0 1405 aa13.85□□□□□ -0.19
SS18-203ENST00000415083 KIF14Q15058 1648 aa13.85□□□□□ -0.19
SS18-203ENST00000415083 ROCK1Q13464 1354 aa13.85□□□□□ -0.19
SS18-203ENST00000415083 BCORL1Q5H9F3 1711 aa13.84□□□□□ -0.19
SS18-203ENST00000415083 EIF4G3O43432 1585 aaKnown RBP13.84□□□□□ -0.19
SS18-203ENST00000415083 KIAA0586Q9BVV6 1533 aa13.83□□□□□ -0.2
SS18-203ENST00000415083 CCDC7Q96M83 1385 aa13.83□□□□□ -0.2
SS18-203ENST00000415083 CROCC2H7BZ55 1655 aa13.83□□□□□ -0.2
SS18-203ENST00000415083 MBD5Q9P267 1494 aa13.82□□□□□ -0.2
SS18-203ENST00000415083 CEP170Q5SW79 1584 aa13.82□□□□□ -0.2
SS18-203ENST00000415083 PRG4Q92954 1404 aaPredicted RBP13.82□□□□□ -0.2
SS18-203ENST00000415083 RBM19Q9Y4C8 960 aaKnown RBP13.81□□□□□ -0.2
SS18-203ENST00000415083 GRIN2AQ12879 1464 aa13.81□□□□□ -0.2
SS18-203ENST00000415083 IRX6P78412 446 aaPredicted RBP13.8□□□□□ -0.2
SS18-203ENST00000415083 HNRNPUQ00839 825 aaKnown RBP eCLIP13.8□□□□□ -0.2
SS18-203ENST00000415083 IFT140Q96RY7 1462 aa13.8□□□□□ -0.2
SS18-203ENST00000415083 ADGBQ8N7X0 1667 aa13.79□□□□□ -0.2
SS18-203ENST00000415083 ADCY10Q96PN6 1610 aa13.79□□□□□ -0.2
SS18-203ENST00000415083 CAMSAP2Q08AD1 1489 aa13.79□□□□□ -0.2
SS18-203ENST00000415083 PLB1Q6P1J6 1458 aa13.79□□□□□ -0.2
SS18-203ENST00000415083 EIF4G2P78344 907 aaKnown RBP eCLIP13.79□□□□□ -0.2
SS18-203ENST00000415083 ANP32EQ9BTT0 268 aa13.78□□□□□ -0.2
SS18-203ENST00000415083 PRKRIP1Q9H875 184 aaPredicted RBP13.78□□□□□ -0.2
SS18-203ENST00000415083 GPATCH8Q9UKJ3 1502 aaKnown RBP13.78□□□□□ -0.2
SS18-203ENST00000415083 KIF7Q2M1P5 1343 aa13.77□□□□□ -0.2
SS18-203ENST00000415083 MSH5O43196 834 aa13.77□□□□□ -0.21
SS18-203ENST00000415083 CDC42BPAQ5VT25 1732 aa13.76□□□□□ -0.21
SS18-203ENST00000415083 DHX29Q7Z478 1369 aaKnown RBP13.75□□□□□ -0.21
SS18-203ENST00000415083 ADGRL2O95490 1459 aa13.74□□□□□ -0.21
SS18-203ENST00000415083 TROQ12816 1431 aaPredicted RBP13.74□□□□□ -0.21
SS18-203ENST00000415083 KDM5CP41229 1560 aa13.73□□□□□ -0.21
SS18-203ENST00000415083 ITSN2Q9NZM3 1697 aa13.73□□□□□ -0.21
SS18-203ENST00000415083 NEFLP07196 543 aa13.71□□□□□ -0.22
SS18-203ENST00000415083 SLC4A1APQ9BWU0 796 aaKnown RBP13.71□□□□□ -0.22
SS18-203ENST00000415083 ABCC10Q5T3U5 1492 aa13.69□□□□□ -0.22
SS18-203ENST00000415083 ABCA8O94911 1581 aa13.68□□□□□ -0.22
SS18-203ENST00000415083 KIAA1107Q9UPP5 1409 aa13.68□□□□□ -0.22
SS18-203ENST00000415083 FAM9BQ8IZU0 186 aa13.67□□□□□ -0.22
SS18-203ENST00000415083 MAGI1Q96QZ7 1491 aaPredicted RBP13.65□□□□□ -0.22
SS18-203ENST00000415083 NUP160Q12769 1436 aa13.65□□□□□ -0.22
SS18-203ENST00000415083 SYNJ2O15056 1496 aa13.65□□□□□ -0.22
SS18-203ENST00000415083 ZBED9Q6R2W3 1325 aa13.65□□□□□ -0.22
SS18-203ENST00000415083 MRS2Q9HD23 443 aa13.64□□□□□ -0.23
SS18-203ENST00000415083 CFDP1Q9UEE9 299 aaPredicted RBP13.64□□□□□ -0.23
SS18-203ENST00000415083 ATP10BO94823 1461 aa13.63□□□□□ -0.23
SS18-203ENST00000415083 E9PCH4 1651 aa13.63□□□□□ -0.23
SS18-203ENST00000415083 UHRF1BP1Q6BDS2 1440 aa13.63□□□□□ -0.23
SS18-203ENST00000415083 USP47Q96K76 1375 aa13.63□□□□□ -0.23
SS18-203ENST00000415083 PKD2Q13563 968 aa13.62□□□□□ -0.23
SS18-203ENST00000415083 KDM5DQ9BY66 1539 aa13.62□□□□□ -0.23
SS18-203ENST00000415083 ANKRD50Q9ULJ7 1429 aa13.61□□□□□ -0.23
SS18-203ENST00000415083 CDC42BPBQ9Y5S2 1711 aa13.61□□□□□ -0.23
SS18-203ENST00000415083 ZNF777Q9ULD5 760 aaPredicted RBP13.61□□□□□ -0.23
SS18-203ENST00000415083 RALGAPBQ86X10 1494 aa13.6□□□□□ -0.23
SS18-203ENST00000415083 SENP3-EIF4A1A0A087X0R7 540 aa13.6□□□□□ -0.23
SS18-203ENST00000415083 PTPRGP23470 1445 aa13.59□□□□□ -0.23
SS18-203ENST00000415083 SHANK2Q9UPX8 1470 aa13.59□□□□□ -0.23
SS18-203ENST00000415083 B4GALNT3Q6L9W6 998 aa13.58□□□□□ -0.24
SS18-203ENST00000415083 JPH4Q96JJ6 628 aa13.58□□□□□ -0.24
SS18-203ENST00000415083 C9orf84Q5VXU9 1444 aa13.58□□□□□ -0.24
SS18-203ENST00000415083 SAMD9LQ8IVG5 1584 aa13.58□□□□□ -0.24
SS18-203ENST00000415083 CDK11AQ9UQ88 783 aaPredicted RBP13.57□□□□□ -0.24
SS18-203ENST00000415083 PPP4R2Q9NY27 417 aa13.57□□□□□ -0.24
SS18-203ENST00000415083 ANKRD30AQ9BXX3 1397 aa13.56□□□□□ -0.24
SS18-203ENST00000415083 RNF123Q5XPI4 1314 aa13.56□□□□□ -0.24
SS18-203ENST00000415083 SMG6Q86US8 1419 aaKnown RBP13.56□□□□□ -0.24
SS18-203ENST00000415083 FANCIQ9NVI1 1328 aa13.55□□□□□ -0.24
SS18-203ENST00000415083 ARHGEF12Q9NZN5 1544 aa13.55□□□□□ -0.24
SS18-203ENST00000415083 CHMP7Q8WUX9 453 aaPredicted RBP13.55□□□□□ -0.24
SS18-203ENST00000415083 CNGB1Q14028 1251 aaPredicted RBP13.55□□□□□ -0.24
SS18-203ENST00000415083 ZNF326Q5BKZ1 582 aaKnown RBP13.55□□□□□ -0.24
SS18-203ENST00000415083 ARHGEF5Q12774 1597 aa13.55□□□□□ -0.24
SS18-203ENST00000415083 TRPM1Q7Z4N2 1603 aa13.54□□□□□ -0.24
SS18-203ENST00000415083 ERICH6BQ5W0A0 696 aa13.54□□□□□ -0.24
SS18-203ENST00000415083 NUP155O75694 1391 aa13.54□□□□□ -0.24
SS18-203ENST00000415083 PNISRQ8TF01 805 aaKnown RBP13.54□□□□□ -0.24
SS18-203ENST00000415083 PLA2R1Q13018 1463 aa13.53□□□□□ -0.24
SS18-203ENST00000415083 PREX2Q70Z35 1606 aa13.52□□□□□ -0.24
SS18-203ENST00000415083 HNRNPMP52272 730 aaKnown RBP eCLIP13.52□□□□□ -0.25
SS18-203ENST00000415083 BCL11AQ9H165 835 aa13.52□□□□□ -0.25
SS18-203ENST00000415083 FBLN2P98095 1184 aa13.52□□□□□ -0.25
SS18-203ENST00000415083 LRPPRCP42704 1394 aaKnown RBP13.51□□□□□ -0.25
SS18-203ENST00000415083 FAM135AQ9P2D6 1515 aa13.51□□□□□ -0.25
SS18-203ENST00000415083 CARMIL2Q6F5E8 1435 aa13.5□□□□□ -0.25
SS18-203ENST00000415083 ERCC6Q03468 1493 aa13.5□□□□□ -0.25
SS18-203ENST00000415083 ST20-MTHFSA0A0A6YYL1 179 aa13.5□□□□□ -0.25
SS18-203ENST00000415083 TTC37Q6PGP7 1564 aa13.5□□□□□ -0.25
SS18-203ENST00000415083 MYO5CQ9NQX4 1742 aa13.5□□□□□ -0.25
SS18-203ENST00000415083 KIF15Q9NS87 1388 aa13.49□□□□□ -0.25
SS18-203ENST00000415083 UNC13BO14795 1591 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms