RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 SAFB2Q14151 953 aaKnown RBP eCLIP22.35■■□□□ 1.17
PHRF1-202ENST00000413872 PTPRGP23470 1445 aa22.35■■□□□ 1.17
PHRF1-202ENST00000413872 HNRNPMP52272 730 aaKnown RBP eCLIP22.35■■□□□ 1.171e-6■■■□□ 17.1
PHRF1-202ENST00000413872 HSPA5P11021 654 aaKnown RBP22.34■■□□□ 1.17
PHRF1-202ENST00000413872 ROCK2O75116 1388 aaKnown RBP22.34■■□□□ 1.17
PHRF1-202ENST00000413872 EID1Q9Y6B2 187 aa22.34■■□□□ 1.17
PHRF1-202ENST00000413872 NCLP19338 710 aaKnown RBP22.33■■□□□ 1.17
PHRF1-202ENST00000413872 KTN1Q86UP2 1357 aaKnown RBP22.33■■□□□ 1.16
PHRF1-202ENST00000413872 CCER2I3L3R5 266 aa22.33■■□□□ 1.16
PHRF1-202ENST00000413872 WASHC2CQ9Y4E1 1318 aa22.32■■□□□ 1.16
PHRF1-202ENST00000413872 NPHP1O15259 732 aa22.32■■□□□ 1.16
PHRF1-202ENST00000413872 OSCARQ8IYS5 282 aa22.31■■□□□ 1.16
PHRF1-202ENST00000413872 FRAT1Q92837 279 aaPredicted RBP22.31■■□□□ 1.16
PHRF1-202ENST00000413872 SUPT16HQ9Y5B9 1047 aaKnown RBP22.31■■□□□ 1.16
PHRF1-202ENST00000413872 GOLGA6L22H0YM25 854 aa22.3■■□□□ 1.16
PHRF1-202ENST00000413872 ANP32EQ9BTT0 268 aa22.3■■□□□ 1.16
PHRF1-202ENST00000413872 RTF1Q92541 710 aaKnown RBP22.28■■□□□ 1.16
PHRF1-202ENST00000413872 FOXD1Q16676 465 aa22.28■■□□□ 1.16
PHRF1-202ENST00000413872 CALD1Q05682 793 aaKnown RBP22.26■■□□□ 1.15
PHRF1-202ENST00000413872 NCAPD3P42695 1498 aa22.26■■□□□ 1.15
PHRF1-202ENST00000413872 SOX12O15370 315 aa22.25■■□□□ 1.15
PHRF1-202ENST00000413872 PPP4R2Q9NY27 417 aa22.25■■□□□ 1.15
PHRF1-202ENST00000413872 CHMP4AQ9BY43 222 aa22.25■■□□□ 1.15
PHRF1-202ENST00000413872 OS9Q13438 667 aaPredicted RBP22.25■■□□□ 1.15
PHRF1-202ENST00000413872 GAPVD1Q14C86 1478 aa22.25■■□□□ 1.15
PHRF1-202ENST00000413872 RALBP1Q15311 655 aa22.24■■□□□ 1.15
PHRF1-202ENST00000413872 SENP3-EIF4A1A0A087X0R7 540 aa22.23■■□□□ 1.15
PHRF1-202ENST00000413872 TERF2IPQ9NYB0 399 aa22.23■■□□□ 1.15
PHRF1-202ENST00000413872 NBR1Q14596 966 aa22.23■■□□□ 1.15
PHRF1-202ENST00000413872 CDK11BP21127 795 aaKnown RBP22.21■■□□□ 1.15
PHRF1-202ENST00000413872 FGD5Q6ZNL6 1462 aa22.2■■□□□ 1.15
PHRF1-202ENST00000413872 PAK3O75914 559 aaPredicted RBP22.19■■□□□ 1.14
PHRF1-202ENST00000413872 UACAQ9BZF9 1416 aa22.18■■□□□ 1.14
PHRF1-202ENST00000413872 IPO8O15397 1037 aaKnown RBP22.16■■□□□ 1.14
PHRF1-202ENST00000413872 CFAP44Q96MT7 982 aa22.14■■□□□ 1.14
PHRF1-202ENST00000413872 CSB-PGBD3P0DP91 1061 aa22.14■■□□□ 1.14
PHRF1-202ENST00000413872 GOLGA2Q08379 1002 aa22.14■■□□□ 1.14
PHRF1-202ENST00000413872 L3MBTL2Q969R5 705 aa22.14■■□□□ 1.13
PHRF1-202ENST00000413872 U2AF1L5P0DN76 240 aaPredicted RBP22.13■■□□□ 1.13
PHRF1-202ENST00000413872 U2AF1Q01081 240 aaKnown RBP eCLIP22.13■■□□□ 1.13
PHRF1-202ENST00000413872 ZRSR1Q15695 479 aaKnown RBP22.13■■□□□ 1.13
PHRF1-202ENST00000413872 CYB5RLQ6IPT4 315 aa22.13■■□□□ 1.13
PHRF1-202ENST00000413872 IGF1RP08069 1367 aa22.12■■□□□ 1.13
PHRF1-202ENST00000413872 CCDC144AA2RUR9 1427 aa22.12■■□□□ 1.13
PHRF1-202ENST00000413872 RGS3P49796 1198 aa22.1■■□□□ 1.13
PHRF1-202ENST00000413872 VGFO15240 615 aaPredicted RBP22.08■■□□□ 1.13
PHRF1-202ENST00000413872 NGDNQ8NEJ9 315 aaKnown RBP22.08■■□□□ 1.13
PHRF1-202ENST00000413872 KCNJ4P48050 445 aa22.07■■□□□ 1.12
PHRF1-202ENST00000413872 FGD1P98174 961 aa22.06■■□□□ 1.12
PHRF1-202ENST00000413872 RUSC2Q8N2Y8 1516 aa22.05■■□□□ 1.12
PHRF1-202ENST00000413872 RAD54L2Q9Y4B4 1467 aa22.04■■□□□ 1.12
PHRF1-202ENST00000413872 HDAC5Q9UQL6 1122 aa22.03■■□□□ 1.12
PHRF1-202ENST00000413872 MYOM3Q5VTT5 1437 aa22.02■■□□□ 1.12
PHRF1-202ENST00000413872 LMOD3Q0VAK6 560 aa22.01■■□□□ 1.11
PHRF1-202ENST00000413872 PHLDB1Q86UU1 1377 aa22■■□□□ 1.11
PHRF1-202ENST00000413872 NLRP13Q86W25 1043 aa22■■□□□ 1.11
PHRF1-202ENST00000413872 MCCP23508 829 aa21.99■■□□□ 1.11
PHRF1-202ENST00000413872 STK31Q9BXU1 1019 aa21.98■■□□□ 1.11
PHRF1-202ENST00000413872 GRIN2BQ13224 1484 aa21.98■■□□□ 1.11
PHRF1-202ENST00000413872 ERICH6BQ5W0A0 696 aa21.97■■□□□ 1.11
PHRF1-202ENST00000413872 TRAK1Q9UPV9 953 aa21.97■■□□□ 1.11
PHRF1-202ENST00000413872 AMPHP49418 695 aa21.96■■□□□ 1.11
PHRF1-202ENST00000413872 NUTM2DQ5VT03 806 aaPredicted RBP21.96■■□□□ 1.11
PHRF1-202ENST00000413872 TRIM44Q96DX7 344 aaPredicted RBP21.96■■□□□ 1.11
PHRF1-202ENST00000413872 STAC3Q96MF2 364 aa21.95■■□□□ 1.11
PHRF1-202ENST00000413872 CUX1P39880 1505 aa21.95■■□□□ 1.1
PHRF1-202ENST00000413872 HSP90AB1P08238 724 aaKnown RBP21.94■■□□□ 1.1
PHRF1-202ENST00000413872 AQRO60306 1485 aaKnown RBP eCLIP21.93■■□□□ 1.12e-7■■■■■ 30.3
PHRF1-202ENST00000413872 EVC2Q86UK5 1308 aa21.93■■□□□ 1.1
PHRF1-202ENST00000413872 RCAN3Q9UKA8 241 aa21.92■■□□□ 1.1
PHRF1-202ENST00000413872 FAM69CQ0P6D2 419 aa21.92■■□□□ 1.1
PHRF1-202ENST00000413872 PDE3BQ13370 1112 aa21.91■■□□□ 1.1
PHRF1-202ENST00000413872 KIF15Q9NS87 1388 aa21.91■■□□□ 1.1
PHRF1-202ENST00000413872 CCDC9Q9Y3X0 531 aaKnown RBP21.91■■□□□ 1.1
PHRF1-202ENST00000413872 RWDD1Q9H446 243 aaPredicted RBP21.91■■□□□ 1.1
PHRF1-202ENST00000413872 CFTRP13569 1480 aa21.9■■□□□ 1.1
PHRF1-202ENST00000413872 B4GALNT3Q6L9W6 998 aa21.9■■□□□ 1.1
PHRF1-202ENST00000413872 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.9■■□□□ 1.1
PHRF1-202ENST00000413872 HSCBQ8IWL3 235 aa21.88■■□□□ 1.09
PHRF1-202ENST00000413872 MRC2Q9UBG0 1479 aa21.87■■□□□ 1.09
PHRF1-202ENST00000413872 ST20-MTHFSA0A0A6YYL1 179 aa21.87■■□□□ 1.09
PHRF1-202ENST00000413872 NAP1L2Q9ULW6 460 aaPredicted RBP21.86■■□□□ 1.09
PHRF1-202ENST00000413872 DHX57Q6P158 1386 aaKnown RBP21.86■■□□□ 1.09
PHRF1-202ENST00000413872 TMX4Q9H1E5 349 aaPredicted RBP21.86■■□□□ 1.09
PHRF1-202ENST00000413872 CGNL1Q0VF96 1302 aa21.85■■□□□ 1.09
PHRF1-202ENST00000413872 ITPRIPQ8IWB1 547 aa21.85■■□□□ 1.09
PHRF1-202ENST00000413872 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.85■■□□□ 1.09
PHRF1-202ENST00000413872 KIAA1211Q6ZU35 1233 aa21.85■■□□□ 1.09
PHRF1-202ENST00000413872 HMMRO75330 724 aa21.84■■□□□ 1.09
PHRF1-202ENST00000413872 PTMAP06454 111 aaKnown RBP21.84■■□□□ 1.09
PHRF1-202ENST00000413872 ZNF330Q9Y3S2 320 aaPredicted RBP21.84■■□□□ 1.09
PHRF1-202ENST00000413872 FGD6Q6ZV73 1430 aa21.84■■□□□ 1.09
PHRF1-202ENST00000413872 IFT140Q96RY7 1462 aa21.84■■□□□ 1.09
PHRF1-202ENST00000413872 COG3Q96JB2 828 aa21.84■■□□□ 1.09
PHRF1-202ENST00000413872 PMFBP1Q8TBY8 1022 aa21.83■■□□□ 1.08
PHRF1-202ENST00000413872 SMC4Q9NTJ3 1288 aa21.83■■□□□ 1.08
PHRF1-202ENST00000413872 MYBBP1AQ9BQG0 1328 aaKnown RBP21.82■■□□□ 1.08
PHRF1-202ENST00000413872 CASKIN1Q8WXD9 1431 aa21.82■■□□□ 1.08
PHRF1-202ENST00000413872 HMGXB3Q12766 1538 aa21.81■■□□□ 1.08
PHRF1-202ENST00000413872 SYNJ2O15056 1496 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms