RNA–Protein interactions for RNA: ENST00000400555.7

PPP4R1-202, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PPP4R1, Length 3,885 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-202ENST00000400555 PPP4R2Q9NY27 417 aa17.2■□□□□ 0.34
PPP4R1-202ENST00000400555 HNRNPMP52272 730 aaKnown RBP eCLIP17.2■□□□□ 0.342e-6■■■■□ 23.5
PPP4R1-202ENST00000400555 CCDC136Q96JN2 1154 aa17.2■□□□□ 0.34
PPP4R1-202ENST00000400555 GRIN2BQ13224 1484 aa17.18■□□□□ 0.34
PPP4R1-202ENST00000400555 EPRSP07814 1512 aaKnown RBP17.17■□□□□ 0.34
PPP4R1-202ENST00000400555 CUL7Q14999 1698 aa17.17■□□□□ 0.34
PPP4R1-202ENST00000400555 NPM2Q86SE8 214 aaKnown RBP17.17■□□□□ 0.34
PPP4R1-202ENST00000400555 PRG4Q92954 1404 aaPredicted RBP17.16■□□□□ 0.34
PPP4R1-202ENST00000400555 MAGI3Q5TCQ9 1506 aa17.16■□□□□ 0.34
PPP4R1-202ENST00000400555 NBR1Q14596 966 aa17.16■□□□□ 0.34
PPP4R1-202ENST00000400555 PRDM2Q13029 1718 aa17.16■□□□□ 0.34
PPP4R1-202ENST00000400555 NUP155O75694 1391 aa17.15■□□□□ 0.34
PPP4R1-202ENST00000400555 SUPT6HQ7KZ85 1726 aaKnown RBP17.15■□□□□ 0.34
PPP4R1-202ENST00000400555 EHBP1L1Q8N3D4 1523 aa17.15■□□□□ 0.34
PPP4R1-202ENST00000400555 JPH4Q96JJ6 628 aa17.15■□□□□ 0.34
PPP4R1-202ENST00000400555 ZNF608Q9ULD9 1512 aaPredicted RBP17.13■□□□□ 0.33
PPP4R1-202ENST00000400555 ST20-MTHFSA0A0A6YYL1 179 aa17.13■□□□□ 0.33
PPP4R1-202ENST00000400555 CNTLNQ9NXG0 1405 aa17.13■□□□□ 0.33
PPP4R1-202ENST00000400555 CTTNBP2Q8WZ74 1663 aa17.12■□□□□ 0.33
PPP4R1-202ENST00000400555 MSH5O43196 834 aa17.12■□□□□ 0.33
PPP4R1-202ENST00000400555 THOC2Q8NI27 1593 aaKnown RBP17.11■□□□□ 0.33
PPP4R1-202ENST00000400555 CC2D1BQ5T0F9 858 aaKnown RBP17.1■□□□□ 0.33
PPP4R1-202ENST00000400555 ERCC6Q03468 1493 aa17.09■□□□□ 0.33
PPP4R1-202ENST00000400555 KDM6BO15054 1643 aa17.09■□□□□ 0.33
PPP4R1-202ENST00000400555 USP47Q96K76 1375 aa17.09■□□□□ 0.33
PPP4R1-202ENST00000400555 ANKRD30BQ9BXX2 1392 aa17.09■□□□□ 0.33
PPP4R1-202ENST00000400555 DAPK1P53355 1430 aa17.08■□□□□ 0.32
PPP4R1-202ENST00000400555 UGGT2Q9NYU1 1516 aa17.08■□□□□ 0.32
PPP4R1-202ENST00000400555 ABCC5O15440 1437 aa17.08■□□□□ 0.32
PPP4R1-202ENST00000400555 LAMC3Q9Y6N6 1575 aa17.06■□□□□ 0.32
PPP4R1-202ENST00000400555 ZBED9Q6R2W3 1325 aa17.05■□□□□ 0.32
PPP4R1-202ENST00000400555 IQGAP2Q13576 1575 aa17.04■□□□□ 0.32
PPP4R1-202ENST00000400555 AKNAQ7Z591 1439 aa17.04■□□□□ 0.32
PPP4R1-202ENST00000400555 SENP3Q9H4L4 574 aaPredicted RBP17.03■□□□□ 0.32
PPP4R1-202ENST00000400555 PLB1Q6P1J6 1458 aa17.03■□□□□ 0.32
PPP4R1-202ENST00000400555 ANKRD30AQ9BXX3 1397 aa17.03■□□□□ 0.32
PPP4R1-202ENST00000400555 MIA2Q96PC5 1412 aa17.02■□□□□ 0.32
PPP4R1-202ENST00000400555 HECW1Q76N89 1606 aa17.01■□□□□ 0.31
PPP4R1-202ENST00000400555 NUDCQ9Y266 331 aa16.99■□□□□ 0.31
PPP4R1-202ENST00000400555 NCOA1Q15788 1441 aa16.99■□□□□ 0.31
PPP4R1-202ENST00000400555 DENND4BO75064 1496 aaPredicted RBP16.99■□□□□ 0.31
PPP4R1-202ENST00000400555 SAMD9Q5K651 1589 aa16.99■□□□□ 0.31
PPP4R1-202ENST00000400555 KIF21AQ7Z4S6 1674 aa16.98■□□□□ 0.31
PPP4R1-202ENST00000400555 NBPF1Q3BBV0 1214 aa16.98■□□□□ 0.31
PPP4R1-202ENST00000400555 ABCA5Q8WWZ7 1642 aa16.97■□□□□ 0.31
PPP4R1-202ENST00000400555 ROCK2O75116 1388 aaKnown RBP16.97■□□□□ 0.31
PPP4R1-202ENST00000400555 ANKRD50Q9ULJ7 1429 aa16.97■□□□□ 0.31
PPP4R1-202ENST00000400555 ANP32AP39687 249 aaKnown RBP16.96■□□□□ 0.31
PPP4R1-202ENST00000400555 LRRIQ1Q96JM4 1722 aa16.96■□□□□ 0.3
PPP4R1-202ENST00000400555 PLIN1O60240 522 aa16.95■□□□□ 0.3
PPP4R1-202ENST00000400555 RPRD2Q5VT52 1461 aaKnown RBP16.95■□□□□ 0.3
PPP4R1-202ENST00000400555 MRC2Q9UBG0 1479 aa16.95■□□□□ 0.3
PPP4R1-202ENST00000400555 BCL11AQ9H165 835 aa16.94■□□□□ 0.3
PPP4R1-202ENST00000400555 NUP153P49790 1475 aaKnown RBP16.93■□□□□ 0.3
PPP4R1-202ENST00000400555 CARMIL2Q6F5E8 1435 aa16.93■□□□□ 0.3
PPP4R1-202ENST00000400555 EXOC6Q8TAG9 804 aa16.92■□□□□ 0.3
PPP4R1-202ENST00000400555 PNISRQ8TF01 805 aaKnown RBP16.92■□□□□ 0.3
PPP4R1-202ENST00000400555 TROQ12816 1431 aaPredicted RBP16.92■□□□□ 0.3
PPP4R1-202ENST00000400555 CDCA7LQ96GN5 454 aa16.91■□□□□ 0.3
PPP4R1-202ENST00000400555 TCOF1Q13428 1488 aaKnown RBP16.91■□□□□ 0.3
PPP4R1-202ENST00000400555 KIAA0586Q9BVV6 1533 aa16.91■□□□□ 0.3
PPP4R1-202ENST00000400555 KDM5BQ9UGL1 1544 aa16.91■□□□□ 0.3
PPP4R1-202ENST00000400555 KIAA1107Q9UPP5 1409 aa16.9■□□□□ 0.3
PPP4R1-202ENST00000400555 ROCK1Q13464 1354 aa16.89■□□□□ 0.29
PPP4R1-202ENST00000400555 KIF15Q9NS87 1388 aa16.89■□□□□ 0.29
PPP4R1-202ENST00000400555 CAMSAP2Q08AD1 1489 aa16.89■□□□□ 0.29
PPP4R1-202ENST00000400555 CHGAP10645 457 aaKnown RBP16.89■□□□□ 0.29
PPP4R1-202ENST00000400555 SKAP1Q86WV1 359 aa16.89■□□□□ 0.29
PPP4R1-202ENST00000400555 PAK3O75914 559 aaPredicted RBP16.88■□□□□ 0.29
PPP4R1-202ENST00000400555 ZBTB47Q9UFB7 747 aaPredicted RBP16.88■□□□□ 0.29
PPP4R1-202ENST00000400555 WDR62O43379 1518 aa16.88■□□□□ 0.29
PPP4R1-202ENST00000400555 RTL5Q5HYW3 569 aaPredicted RBP16.88■□□□□ 0.29
PPP4R1-202ENST00000400555 ERICH6BQ5W0A0 696 aa16.88■□□□□ 0.29
PPP4R1-202ENST00000400555 NOP58Q9Y2X3 529 aaKnown RBP16.88■□□□□ 0.29
PPP4R1-202ENST00000400555 RCAN3Q9UKA8 241 aa16.88■□□□□ 0.29
PPP4R1-202ENST00000400555 PANK3Q9H999 370 aa16.87■□□□□ 0.29
PPP4R1-202ENST00000400555 FANCIQ9NVI1 1328 aa16.87■□□□□ 0.29
PPP4R1-202ENST00000400555 ARHGEF11O15085 1522 aa16.86■□□□□ 0.29
PPP4R1-202ENST00000400555 TARBP1Q13395 1621 aaKnown RBP16.86■□□□□ 0.29
PPP4R1-202ENST00000400555 GRIN2AQ12879 1464 aa16.85■□□□□ 0.29
PPP4R1-202ENST00000400555 DISP1Q96F81 1524 aa16.85■□□□□ 0.29
PPP4R1-202ENST00000400555 GPATCH8Q9UKJ3 1502 aaKnown RBP16.85■□□□□ 0.29
PPP4R1-202ENST00000400555 LAS1LQ9Y4W2 734 aaKnown RBP16.85■□□□□ 0.29
PPP4R1-202ENST00000400555 IFT140Q96RY7 1462 aa16.84■□□□□ 0.29
PPP4R1-202ENST00000400555 MYBBP1AQ9BQG0 1328 aaKnown RBP16.83■□□□□ 0.29
PPP4R1-202ENST00000400555 C9orf84Q5VXU9 1444 aa16.83■□□□□ 0.29
PPP4R1-202ENST00000400555 TEX14Q8IWB6 1497 aa16.83■□□□□ 0.28
PPP4R1-202ENST00000400555 ADAMTS12P58397 1594 aa16.83■□□□□ 0.28
PPP4R1-202ENST00000400555 PTPRGP23470 1445 aa16.82■□□□□ 0.28
PPP4R1-202ENST00000400555 PZPP20742 1482 aa16.82■□□□□ 0.28
PPP4R1-202ENST00000400555 WDR43Q15061 677 aaKnown RBP eCLIP16.82■□□□□ 0.28
PPP4R1-202ENST00000400555 KTN1Q86UP2 1357 aaKnown RBP16.81■□□□□ 0.28
PPP4R1-202ENST00000400555 RALBP1Q15311 655 aa16.81■□□□□ 0.28
PPP4R1-202ENST00000400555 NLRP13Q86W25 1043 aa16.81■□□□□ 0.28
PPP4R1-202ENST00000400555 TNNT2P45379 298 aaPredicted RBP16.81■□□□□ 0.28
PPP4R1-202ENST00000400555 DHX29Q7Z478 1369 aaKnown RBP16.81■□□□□ 0.28
PPP4R1-202ENST00000400555 KNSTRNQ9Y448 316 aa16.8■□□□□ 0.28
PPP4R1-202ENST00000400555 DEKP35659 375 aaKnown RBP16.79■□□□□ 0.28
PPP4R1-202ENST00000400555 CCDC144AA2RUR9 1427 aa16.79■□□□□ 0.28
PPP4R1-202ENST00000400555 RRP1P56182 461 aaKnown RBP16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms