RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 ZNF644Q9H582 1327 aaPredicted RBP11.4□□□□□ -0.58
PTPRD-204ENST00000397606 PLB1Q6P1J6 1458 aa11.4□□□□□ -0.59
PTPRD-204ENST00000397606 WASHC2CQ9Y4E1 1318 aa11.39□□□□□ -0.59
PTPRD-204ENST00000397606 ARHGAP5Q13017 1502 aa11.39□□□□□ -0.59
PTPRD-204ENST00000397606 MIA2Q96PC5 1412 aa11.38□□□□□ -0.59
PTPRD-204ENST00000397606 ABCA5Q8WWZ7 1642 aa11.37□□□□□ -0.59
PTPRD-204ENST00000397606 CARD11Q9BXL7 1154 aa11.37□□□□□ -0.59
PTPRD-204ENST00000397606 DCAF11Q8TEB1 546 aa11.36□□□□□ -0.59
PTPRD-204ENST00000397606 PLEKHH2Q8IVE3 1493 aa11.36□□□□□ -0.59
PTPRD-204ENST00000397606 CDK13Q14004 1512 aaKnown RBP11.36□□□□□ -0.59
PTPRD-204ENST00000397606 PCF11O94913 1555 aaKnown RBP11.36□□□□□ -0.59
PTPRD-204ENST00000397606 DDX10Q13206 875 aaKnown RBP11.36□□□□□ -0.59
PTPRD-204ENST00000397606 FOXD1Q16676 465 aa11.35□□□□□ -0.59
PTPRD-204ENST00000397606 TARBP1Q13395 1621 aaKnown RBP11.35□□□□□ -0.59
PTPRD-204ENST00000397606 NUP160Q12769 1436 aa11.35□□□□□ -0.59
PTPRD-204ENST00000397606 CDCA8Q53HL2 280 aa11.34□□□□□ -0.59
PTPRD-204ENST00000397606 MAP3K1Q13233 1512 aa11.34□□□□□ -0.59
PTPRD-204ENST00000397606 KIF15Q9NS87 1388 aa11.34□□□□□ -0.59
PTPRD-204ENST00000397606 SENP3Q9H4L4 574 aaPredicted RBP11.34□□□□□ -0.59
PTPRD-204ENST00000397606 UGGT2Q9NYU1 1516 aa11.34□□□□□ -0.59
PTPRD-204ENST00000397606 RRBP1Q9P2E9 1410 aaKnown RBP11.34□□□□□ -0.59
PTPRD-204ENST00000397606 NEFMP07197 916 aa11.33□□□□□ -0.6
PTPRD-204ENST00000397606 PBRM1Q86U86 1689 aa11.33□□□□□ -0.6
PTPRD-204ENST00000397606 AFAP1Q8N556 730 aa11.33□□□□□ -0.6
PTPRD-204ENST00000397606 SLC24A1O60721 1099 aa11.32□□□□□ -0.6
PTPRD-204ENST00000397606 SUPT6HQ7KZ85 1726 aaKnown RBP11.32□□□□□ -0.6
PTPRD-204ENST00000397606 CTTNBP2Q8WZ74 1663 aa11.31□□□□□ -0.6
PTPRD-204ENST00000397606 HIRIP3Q9BW71 556 aaPredicted RBP11.31□□□□□ -0.6
PTPRD-204ENST00000397606 C14orf37Q86TY3 774 aa11.3□□□□□ -0.6
PTPRD-204ENST00000397606 ANKRD50Q9ULJ7 1429 aa11.3□□□□□ -0.6
PTPRD-204ENST00000397606 THOC2Q8NI27 1593 aaKnown RBP11.3□□□□□ -0.6
PTPRD-204ENST00000397606 POGKQ9P215 609 aa11.29□□□□□ -0.6
PTPRD-204ENST00000397606 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.29□□□□□ -0.6
PTPRD-204ENST00000397606 KIAA0556O60303 1618 aa11.27□□□□□ -0.6
PTPRD-204ENST00000397606 CD109Q6YHK3 1445 aa11.27□□□□□ -0.6
PTPRD-204ENST00000397606 DHX57Q6P158 1386 aaKnown RBP11.27□□□□□ -0.61
PTPRD-204ENST00000397606 CCDC144AA2RUR9 1427 aa11.27□□□□□ -0.61
PTPRD-204ENST00000397606 ARHGEF11O15085 1522 aa11.27□□□□□ -0.61
PTPRD-204ENST00000397606 KIF14Q15058 1648 aa11.27□□□□□ -0.61
PTPRD-204ENST00000397606 C9orf84Q5VXU9 1444 aa11.26□□□□□ -0.61
PTPRD-204ENST00000397606 SCAPERQ9BY12 1400 aa11.26□□□□□ -0.61
PTPRD-204ENST00000397606 TMC1Q8TDI8 760 aa11.26□□□□□ -0.61
PTPRD-204ENST00000397606 RAPGEF6Q8TEU7 1601 aa11.26□□□□□ -0.61
PTPRD-204ENST00000397606 ATP10BO94823 1461 aa11.24□□□□□ -0.61
PTPRD-204ENST00000397606 L3MBTL2Q969R5 705 aa11.24□□□□□ -0.61
PTPRD-204ENST00000397606 EID1Q9Y6B2 187 aa11.23□□□□□ -0.61
PTPRD-204ENST00000397606 NUP153P49790 1475 aaKnown RBP11.23□□□□□ -0.61
PTPRD-204ENST00000397606 DAPK1P53355 1430 aa11.23□□□□□ -0.61
PTPRD-204ENST00000397606 TMF1P82094 1093 aa11.22□□□□□ -0.61
PTPRD-204ENST00000397606 RAPGEF3O95398 923 aa11.22□□□□□ -0.61
PTPRD-204ENST00000397606 DISP1Q96F81 1524 aa11.22□□□□□ -0.61
PTPRD-204ENST00000397606 CCDC141Q6ZP82 1450 aa11.21□□□□□ -0.62
PTPRD-204ENST00000397606 HFM1A2PYH4 1435 aa11.2□□□□□ -0.62
PTPRD-204ENST00000397606 CEP170Q5SW79 1584 aa11.2□□□□□ -0.62
PTPRD-204ENST00000397606 ROCK2O75116 1388 aaKnown RBP11.2□□□□□ -0.62
PTPRD-204ENST00000397606 KNSTRNQ9Y448 316 aa11.2□□□□□ -0.62
PTPRD-204ENST00000397606 ASXL2Q76L83 1435 aa11.2□□□□□ -0.62
PTPRD-204ENST00000397606 ROCK1Q13464 1354 aa11.19□□□□□ -0.62
PTPRD-204ENST00000397606 CAMSAP2Q08AD1 1489 aa11.19□□□□□ -0.62
PTPRD-204ENST00000397606 ADGRL1O94910 1474 aa11.19□□□□□ -0.62
PTPRD-204ENST00000397606 VGFO15240 615 aaPredicted RBP11.18□□□□□ -0.62
PTPRD-204ENST00000397606 MRS2Q9HD23 443 aa11.17□□□□□ -0.62
PTPRD-204ENST00000397606 STK26Q9P289 416 aa11.17□□□□□ -0.62
PTPRD-204ENST00000397606 WDR7Q9Y4E6 1490 aa11.17□□□□□ -0.62
PTPRD-204ENST00000397606 ABCC2Q92887 1545 aa11.17□□□□□ -0.62
PTPRD-204ENST00000397606 STAC3Q96MF2 364 aa11.17□□□□□ -0.62
PTPRD-204ENST00000397606 EIF3AQ14152 1382 aaKnown RBP11.17□□□□□ -0.62
PTPRD-204ENST00000397606 FANCAO15360 1455 aa11.17□□□□□ -0.62
PTPRD-204ENST00000397606 HSPA5P11021 654 aaKnown RBP11.16□□□□□ -0.62
PTPRD-204ENST00000397606 WDR43Q15061 677 aaKnown RBP eCLIP11.16□□□□□ -0.62
PTPRD-204ENST00000397606 PTPN23Q9H3S7 1636 aa11.16□□□□□ -0.62
PTPRD-204ENST00000397606 FAM9BQ8IZU0 186 aa11.16□□□□□ -0.62
PTPRD-204ENST00000397606 GPATCH8Q9UKJ3 1502 aaKnown RBP11.15□□□□□ -0.62
PTPRD-204ENST00000397606 SRPK2P78362 688 aaKnown RBP11.15□□□□□ -0.62
PTPRD-204ENST00000397606 PLCH2O75038 1416 aa11.15□□□□□ -0.63
PTPRD-204ENST00000397606 ABCC5O15440 1437 aa11.14□□□□□ -0.63
PTPRD-204ENST00000397606 SCAF1Q9H7N4 1312 aaKnown RBP11.14□□□□□ -0.63
PTPRD-204ENST00000397606 SAMD9Q5K651 1589 aa11.14□□□□□ -0.63
PTPRD-204ENST00000397606 DENND4BO75064 1496 aaPredicted RBP11.14□□□□□ -0.63
PTPRD-204ENST00000397606 SAFB2Q14151 953 aaKnown RBP eCLIP11.14□□□□□ -0.63
PTPRD-204ENST00000397606 POGZQ7Z3K3 1410 aa11.14□□□□□ -0.63
PTPRD-204ENST00000397606 NUTM2DQ5VT03 806 aaPredicted RBP11.13□□□□□ -0.63
PTPRD-204ENST00000397606 AKNAQ7Z591 1439 aa11.13□□□□□ -0.63
PTPRD-204ENST00000397606 NAIPQ13075 1403 aa11.12□□□□□ -0.63
PTPRD-204ENST00000397606 CFAP53Q96M91 514 aa11.12□□□□□ -0.63
PTPRD-204ENST00000397606 HNRNPUQ00839 825 aaKnown RBP eCLIP11.12□□□□□ -0.63
PTPRD-204ENST00000397606 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.12□□□□□ -0.63
PTPRD-204ENST00000397606 TEX14Q8IWB6 1497 aa11.12□□□□□ -0.63
PTPRD-204ENST00000397606 MIER1Q8N108 512 aa11.11□□□□□ -0.63
PTPRD-204ENST00000397606 KIAA1107Q9UPP5 1409 aa11.09□□□□□ -0.63
PTPRD-204ENST00000397606 NCOA1Q15788 1441 aa11.09□□□□□ -0.63
PTPRD-204ENST00000397606 HAP1P54257 671 aaPredicted RBP11.09□□□□□ -0.63
PTPRD-204ENST00000397606 SLC52A1Q9NWF4 448 aa11.08□□□□□ -0.64
PTPRD-204ENST00000397606 CANXP27824 592 aaKnown RBP11.08□□□□□ -0.64
PTPRD-204ENST00000397606 ITSN2Q9NZM3 1697 aa11.08□□□□□ -0.64
PTPRD-204ENST00000397606 CHD1O14646 1710 aa11.08□□□□□ -0.64
PTPRD-204ENST00000397606 HDGFL2Q7Z4V5 671 aaPredicted RBP11.07□□□□□ -0.64
PTPRD-204ENST00000397606 TRAK1Q9UPV9 953 aa11.07□□□□□ -0.64
PTPRD-204ENST00000397606 CFAP43Q8NDM7 1665 aa11.06□□□□□ -0.64
PTPRD-204ENST00000397606 LMOD2Q6P5Q4 547 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms