RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 LMOD2Q6P5Q4 547 aa17.63■□□□□ 0.41
COL4A3-202ENST00000396578 GOLGA6L3A6NEY3 463 aa17.63■□□□□ 0.41
COL4A3-202ENST00000396578 CFDP1Q9UEE9 299 aaPredicted RBP17.63■□□□□ 0.41
COL4A3-202ENST00000396578 ISY1Q9ULR0 285 aaKnown RBP17.61■□□□□ 0.41
COL4A3-202ENST00000396578 IPO8O15397 1037 aaKnown RBP17.61■□□□□ 0.41
COL4A3-202ENST00000396578 CCER2I3L3R5 266 aa17.59■□□□□ 0.41
COL4A3-202ENST00000396578 CSPP1Q1MSJ5 1256 aa17.59■□□□□ 0.41
COL4A3-202ENST00000396578 SLKQ9H2G2 1235 aaPredicted RBP17.59■□□□□ 0.41
COL4A3-202ENST00000396578 CCDC34Q96HJ3 373 aa17.58■□□□□ 0.41
COL4A3-202ENST00000396578 PHF14O94880 888 aa17.58■□□□□ 0.4
COL4A3-202ENST00000396578 MYO15BQ96JP2 1530 aa17.57■□□□□ 0.4
COL4A3-202ENST00000396578 TCERG1O14776 1098 aaKnown RBP17.57■□□□□ 0.4
COL4A3-202ENST00000396578 SETQ01105 290 aaPredicted RBP17.56■□□□□ 0.4
COL4A3-202ENST00000396578 RTF1Q92541 710 aaKnown RBP17.56■□□□□ 0.4
COL4A3-202ENST00000396578 RWDD1Q9H446 243 aaPredicted RBP17.54■□□□□ 0.4
COL4A3-202ENST00000396578 SIN3AQ96ST3 1273 aa17.54■□□□□ 0.4
COL4A3-202ENST00000396578 HSP90AA2PQ14568 343 aaPredicted RBP17.54■□□□□ 0.4
COL4A3-202ENST00000396578 APBB1O00213 710 aa17.53■□□□□ 0.4
COL4A3-202ENST00000396578 CALD1Q05682 793 aaKnown RBP17.53■□□□□ 0.4
COL4A3-202ENST00000396578 MORC1Q86VD1 984 aa17.53■□□□□ 0.4
COL4A3-202ENST00000396578 KTN1Q86UP2 1357 aaKnown RBP17.53■□□□□ 0.4
COL4A3-202ENST00000396578 CEP164Q9UPV0 1460 aa17.52■□□□□ 0.4
COL4A3-202ENST00000396578 RCAN3Q9UKA8 241 aa17.51■□□□□ 0.39
COL4A3-202ENST00000396578 GPATCH3Q96I76 525 aa17.51■□□□□ 0.39
COL4A3-202ENST00000396578 PMFBP1Q8TBY8 1022 aa17.51■□□□□ 0.39
COL4A3-202ENST00000396578 HSP90B1P14625 803 aaKnown RBP17.5■□□□□ 0.39
COL4A3-202ENST00000396578 ITPRIPQ8IWB1 547 aa17.5■□□□□ 0.39
COL4A3-202ENST00000396578 IPO9Q96P70 1041 aaKnown RBP17.5■□□□□ 0.39
COL4A3-202ENST00000396578 PRM3Q9NNZ6 103 aa17.5■□□□□ 0.39
COL4A3-202ENST00000396578 DCAF11Q8TEB1 546 aa17.49■□□□□ 0.39
COL4A3-202ENST00000396578 KANK1Q14678 1352 aa17.49■□□□□ 0.39
COL4A3-202ENST00000396578 SRPK2P78362 688 aaKnown RBP17.48■□□□□ 0.39
COL4A3-202ENST00000396578 RSPH6AQ9H0K4 717 aa17.48■□□□□ 0.39
COL4A3-202ENST00000396578 TPM3P06753 285 aa17.47■□□□□ 0.39
COL4A3-202ENST00000396578 MFAP1P55081 439 aaKnown RBP17.46■□□□□ 0.39
COL4A3-202ENST00000396578 KIF27Q86VH2 1401 aa17.44■□□□□ 0.38
COL4A3-202ENST00000396578 CCNB3Q8WWL7 1395 aa17.44■□□□□ 0.38
COL4A3-202ENST00000396578 TRIM6-TRIM34B2RNG4 842 aa17.44■□□□□ 0.38
COL4A3-202ENST00000396578 DDX11L8A8MPP1 907 aa17.43■□□□□ 0.38
COL4A3-202ENST00000396578 SOX12O15370 315 aa17.43■□□□□ 0.38
COL4A3-202ENST00000396578 TNIKQ9UKE5 1360 aa17.43■□□□□ 0.38
COL4A3-202ENST00000396578 CEP89Q96ST8 783 aa17.43■□□□□ 0.38
COL4A3-202ENST00000396578 TIMELESSQ9UNS1 1208 aa17.42■□□□□ 0.38
COL4A3-202ENST00000396578 FHAD1B1AJZ9 1412 aa17.42■□□□□ 0.38
COL4A3-202ENST00000396578 CREBRFQ8IUR6 639 aa17.42■□□□□ 0.38
COL4A3-202ENST00000396578 RASSF8Q8NHQ8 419 aa17.42■□□□□ 0.38
COL4A3-202ENST00000396578 ST18O60284 1047 aa17.41■□□□□ 0.38
COL4A3-202ENST00000396578 PDE4CQ08493 712 aa17.41■□□□□ 0.38
COL4A3-202ENST00000396578 HDGFP51858 240 aaKnown RBP17.4■□□□□ 0.38
COL4A3-202ENST00000396578 KIF16BQ96L93 1317 aa17.39■□□□□ 0.37
COL4A3-202ENST00000396578 CHMP4AQ9BY43 222 aa17.39■□□□□ 0.37
COL4A3-202ENST00000396578 GPS2Q13227 327 aa17.39■□□□□ 0.37
COL4A3-202ENST00000396578 RALBP1Q15311 655 aa17.39■□□□□ 0.37
COL4A3-202ENST00000396578 GORABQ5T7V8 394 aa17.39■□□□□ 0.37
COL4A3-202ENST00000396578 HMMRO75330 724 aa17.38■□□□□ 0.37
COL4A3-202ENST00000396578 KIF3AQ9Y496 699 aa17.38■□□□□ 0.37
COL4A3-202ENST00000396578 TSR1Q2NL82 804 aaKnown RBP17.37■□□□□ 0.37
COL4A3-202ENST00000396578 HDGFL2Q7Z4V5 671 aaPredicted RBP17.37■□□□□ 0.37
COL4A3-202ENST00000396578 WRNQ14191 1432 aaPredicted RBP eCLIP17.37■□□□□ 0.37
COL4A3-202ENST00000396578 SPAG9O60271 1321 aaKnown RBP17.36■□□□□ 0.37
COL4A3-202ENST00000396578 CCDC70Q6NSX1 233 aa17.36■□□□□ 0.37
COL4A3-202ENST00000396578 HDAC5Q9UQL6 1122 aa17.35■□□□□ 0.37
COL4A3-202ENST00000396578 ROCK2O75116 1388 aaKnown RBP17.35■□□□□ 0.37
COL4A3-202ENST00000396578 GOLGA6L19H0YKK7 550 aa17.34■□□□□ 0.37
COL4A3-202ENST00000396578 HSPA5P11021 654 aaKnown RBP17.34■□□□□ 0.37
COL4A3-202ENST00000396578 SMC4Q9NTJ3 1288 aa17.34■□□□□ 0.37
COL4A3-202ENST00000396578 U2AF1L5P0DN76 240 aaPredicted RBP17.34■□□□□ 0.37
COL4A3-202ENST00000396578 U2AF1Q01081 240 aaKnown RBP eCLIP17.34■□□□□ 0.37
COL4A3-202ENST00000396578 CALRP27797 417 aaKnown RBP17.34■□□□□ 0.37
COL4A3-202ENST00000396578 SETD5Q9C0A6 1442 aa17.34■□□□□ 0.37
COL4A3-202ENST00000396578 ZNF771Q7L3S4 317 aaPredicted RBP17.34■□□□□ 0.37
COL4A3-202ENST00000396578 FOXD4L1Q9NU39 408 aa17.34■□□□□ 0.37
COL4A3-202ENST00000396578 SF3A1Q15459 793 aaKnown RBP17.34■□□□□ 0.37
COL4A3-202ENST00000396578 TPD52L1Q16890 204 aaPredicted RBP17.34■□□□□ 0.37
COL4A3-202ENST00000396578 STK31Q9BXU1 1019 aa17.34■□□□□ 0.37
COL4A3-202ENST00000396578 ARHGAP35Q9NRY4 1499 aa17.33■□□□□ 0.36
COL4A3-202ENST00000396578 CHMP3Q9Y3E7 222 aa17.33■□□□□ 0.36
COL4A3-202ENST00000396578 TSHZ2Q9NRE2 1034 aa17.32■□□□□ 0.36
COL4A3-202ENST00000396578 TMX4Q9H1E5 349 aaPredicted RBP17.32■□□□□ 0.36
COL4A3-202ENST00000396578 PES1O00541 588 aaKnown RBP17.32■□□□□ 0.36
COL4A3-202ENST00000396578 TAF7LQ5H9L4 462 aa17.32■□□□□ 0.36
COL4A3-202ENST00000396578 NOL8Q76FK4 1167 aaKnown RBP17.32■□□□□ 0.36
COL4A3-202ENST00000396578 CCAR2Q8N163 923 aaKnown RBP17.32■□□□□ 0.36
COL4A3-202ENST00000396578 SKOR2Q2VWA4 1001 aaPredicted RBP17.32■□□□□ 0.36
COL4A3-202ENST00000396578 SAFB2Q14151 953 aaKnown RBP eCLIP17.31■□□□□ 0.36
COL4A3-202ENST00000396578 TPM1P09493 284 aa17.31■□□□□ 0.36
COL4A3-202ENST00000396578 EIF4G1Q04637 1599 aaKnown RBP17.3■□□□□ 0.36
COL4A3-202ENST00000396578 VSIG10Q8N0Z9 540 aa17.3■□□□□ 0.36
COL4A3-202ENST00000396578 EIF3AQ14152 1382 aaKnown RBP17.3■□□□□ 0.36
COL4A3-202ENST00000396578 H3BQV1 296 aa17.3■□□□□ 0.36
COL4A3-202ENST00000396578 IFFO2Q5TF58 517 aa17.3■□□□□ 0.36
COL4A3-202ENST00000396578 ATP6V1DQ9Y5K8 247 aa17.29■□□□□ 0.36
COL4A3-202ENST00000396578 TPM2P07951 284 aa17.29■□□□□ 0.36
COL4A3-202ENST00000396578 TEX35Q5T0J7 233 aa17.29■□□□□ 0.36
COL4A3-202ENST00000396578 ZNF330Q9Y3S2 320 aaPredicted RBP17.28■□□□□ 0.36
COL4A3-202ENST00000396578 GSE1Q14687 1217 aa17.28■□□□□ 0.36
COL4A3-202ENST00000396578 RB1CC1Q8TDY2 1594 aa17.27■□□□□ 0.36
COL4A3-202ENST00000396578 FOXD4L5Q5VV16 416 aaPredicted RBP17.27■□□□□ 0.35
COL4A3-202ENST00000396578 FOXD4L4Q8WXT5 416 aaPredicted RBP17.27■□□□□ 0.35
COL4A3-202ENST00000396578 CENPJQ9HC77 1338 aaPredicted RBP17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms