RNA–Protein interactions for RNA: ENST00000396215.7

LDHC-202, Transcript of lactate dehydrogenase C, humanhuman

TSL 1 (best)

Gene LDHC, Length 1,092 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHC-202ENST00000396215 SPATA31D1Q6ZQQ2 1576 aa16.72■□□□□ 0.27
LDHC-202ENST00000396215 FER1L4A9Z1Z3 1794 aa16.72■□□□□ 0.27
LDHC-202ENST00000396215 ZFYVE16Q7Z3T8 1539 aa16.71■□□□□ 0.27
LDHC-202ENST00000396215 PREX1Q8TCU6 1659 aa16.71■□□□□ 0.27
LDHC-202ENST00000396215 STRCQ7RTU9 1775 aa16.7■□□□□ 0.26
LDHC-202ENST00000396215 NUP153P49790 1475 aaKnown RBP16.7■□□□□ 0.26
LDHC-202ENST00000396215 P3H3Q8IVL6 736 aa16.7■□□□□ 0.26
LDHC-202ENST00000396215 ARHGEF12Q9NZN5 1544 aa16.7■□□□□ 0.26
LDHC-202ENST00000396215 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.67■□□□□ 0.26
LDHC-202ENST00000396215 HNRNPUL2Q1KMD3 747 aaKnown RBP16.67■□□□□ 0.26
LDHC-202ENST00000396215 SETD1BQ9UPS6 1966 aaKnown RBP16.66■□□□□ 0.26
LDHC-202ENST00000396215 PLEKHD1A6NEE1 506 aa16.66■□□□□ 0.26
LDHC-202ENST00000396215 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.65■□□□□ 0.26
LDHC-202ENST00000396215 HECW1Q76N89 1606 aa16.65■□□□□ 0.26
LDHC-202ENST00000396215 PTPRTO14522 1441 aa16.64■□□□□ 0.25
LDHC-202ENST00000396215 MLECQ14165 292 aa16.64■□□□□ 0.25
LDHC-202ENST00000396215 ATP10AO60312 1499 aa16.63■□□□□ 0.25
LDHC-202ENST00000396215 IQSEC2Q5JU85 1478 aa16.63■□□□□ 0.25
LDHC-202ENST00000396215 SCAF1Q9H7N4 1312 aaKnown RBP16.62■□□□□ 0.25
LDHC-202ENST00000396215 MAPK8IP2Q13387 824 aaPredicted RBP16.6■□□□□ 0.25
LDHC-202ENST00000396215 C9orf84Q5VXU9 1444 aa16.6■□□□□ 0.25
LDHC-202ENST00000396215 UHRF1BP1Q6BDS2 1440 aa16.6■□□□□ 0.25
LDHC-202ENST00000396215 LTBP4Q8N2S1 1624 aa16.59■□□□□ 0.25
LDHC-202ENST00000396215 CEBPAP49715 358 aaPredicted RBP16.59■□□□□ 0.25
LDHC-202ENST00000396215 PLCH2O75038 1416 aa16.58■□□□□ 0.24
LDHC-202ENST00000396215 SCAPERQ9BY12 1400 aa16.58■□□□□ 0.24
LDHC-202ENST00000396215 REREQ9P2R6 1566 aa16.5■□□□□ 0.23
LDHC-202ENST00000396215 NCOA1Q15788 1441 aa16.48■□□□□ 0.23
LDHC-202ENST00000396215 EFCAB2Q5VUJ9 269 aa16.48■□□□□ 0.23
LDHC-202ENST00000396215 CSRNP3Q8WYN3 585 aa16.48■□□□□ 0.23
LDHC-202ENST00000396215 C3P01024 1663 aa16.48■□□□□ 0.23
LDHC-202ENST00000396215 ZNF518AQ6AHZ1 1483 aa16.48■□□□□ 0.23
LDHC-202ENST00000396215 KDM5CP41229 1560 aa16.47■□□□□ 0.23
LDHC-202ENST00000396215 TRAPPC8Q9Y2L5 1435 aa16.47■□□□□ 0.23
LDHC-202ENST00000396215 PPP4R3CPQ6ZMV5 832 aa16.44■□□□□ 0.22
LDHC-202ENST00000396215 AGLP35573 1532 aa16.44■□□□□ 0.22
LDHC-202ENST00000396215 DIP2CQ9Y2E4 1556 aa16.43■□□□□ 0.22
LDHC-202ENST00000396215 MYO5CQ9NQX4 1742 aa16.43■□□□□ 0.22
LDHC-202ENST00000396215 CDK13Q14004 1512 aaKnown RBP16.42■□□□□ 0.22
LDHC-202ENST00000396215 AFAP1Q8N556 730 aa16.42■□□□□ 0.22
LDHC-202ENST00000396215 MLH3Q9UHC1 1453 aa16.42■□□□□ 0.22
LDHC-202ENST00000396215 CNTLNQ9NXG0 1405 aa16.39■□□□□ 0.21
LDHC-202ENST00000396215 NPATQ14207 1427 aa16.38■□□□□ 0.21
LDHC-202ENST00000396215 UBAP1LF5GYI3 381 aa16.38■□□□□ 0.21
LDHC-202ENST00000396215 CAMSAP1Q5T5Y3 1602 aa16.37■□□□□ 0.21
LDHC-202ENST00000396215 ABCA6Q8N139 1617 aa16.37■□□□□ 0.21
LDHC-202ENST00000396215 ESF1Q9H501 851 aaKnown RBP16.36■□□□□ 0.21
LDHC-202ENST00000396215 RANGAP1P46060 587 aaPredicted RBP16.35■□□□□ 0.21
LDHC-202ENST00000396215 CDK11AQ9UQ88 783 aaPredicted RBP16.35■□□□□ 0.21
LDHC-202ENST00000396215 ZNF335Q9H4Z2 1342 aaPredicted RBP16.34■□□□□ 0.21
LDHC-202ENST00000396215 PKD2Q13563 968 aa16.33■□□□□ 0.2
LDHC-202ENST00000396215 EEA1Q15075 1411 aa16.33■□□□□ 0.2
LDHC-202ENST00000396215 PLA2R1Q13018 1463 aa16.33■□□□□ 0.2
LDHC-202ENST00000396215 ARHGAP5Q13017 1502 aa16.33■□□□□ 0.2
LDHC-202ENST00000396215 MROH2AA6NES4 1674 aa16.33■□□□□ 0.2
LDHC-202ENST00000396215 KIF14Q15058 1648 aa16.32■□□□□ 0.2
LDHC-202ENST00000396215 TROQ12816 1431 aaPredicted RBP16.31■□□□□ 0.2
LDHC-202ENST00000396215 NCKAP5LQ9HCH0 1330 aa16.31■□□□□ 0.2
LDHC-202ENST00000396215 MED1Q15648 1581 aaPredicted RBP16.3■□□□□ 0.2
LDHC-202ENST00000396215 TCOF1Q13428 1488 aaKnown RBP16.3■□□□□ 0.2
LDHC-202ENST00000396215 MYT1LQ9UL68 1186 aa16.3■□□□□ 0.2
LDHC-202ENST00000396215 ZMYM3Q14202 1370 aa16.29■□□□□ 0.2
LDHC-202ENST00000396215 CDC42BPBQ9Y5S2 1711 aa16.29■□□□□ 0.2
LDHC-202ENST00000396215 FMN1Q68DA7 1419 aa16.28■□□□□ 0.2
LDHC-202ENST00000396215 KIDINS220Q9ULH0 1771 aa16.28■□□□□ 0.2
LDHC-202ENST00000396215 ZNF142P52746 1687 aaPredicted RBP16.28■□□□□ 0.2
LDHC-202ENST00000396215 ABCC1P33527 1531 aa16.27■□□□□ 0.2
LDHC-202ENST00000396215 HSPA1LP34931 641 aa16.26■□□□□ 0.19
LDHC-202ENST00000396215 CLIP1P30622 1438 aa16.26■□□□□ 0.19
LDHC-202ENST00000396215 ITSN2Q9NZM3 1697 aa16.24■□□□□ 0.19
LDHC-202ENST00000396215 PREX2Q70Z35 1606 aa16.23■□□□□ 0.19
LDHC-202ENST00000396215 MYO3AQ8NEV4 1616 aa16.23■□□□□ 0.19
LDHC-202ENST00000396215 CEP170BQ9Y4F5 1589 aaPredicted RBP16.22■□□□□ 0.19
LDHC-202ENST00000396215 PTPRKQ15262 1439 aa16.21■□□□□ 0.19
LDHC-202ENST00000396215 TOM1O60784 492 aa16.21■□□□□ 0.19
LDHC-202ENST00000396215 ATP1B4Q9UN42 357 aaPredicted RBP16.2■□□□□ 0.18
LDHC-202ENST00000396215 CPS1P31327 1500 aa16.19■□□□□ 0.18
LDHC-202ENST00000396215 SUPT6HQ7KZ85 1726 aaKnown RBP16.19■□□□□ 0.18
LDHC-202ENST00000396215 ARHGAP35Q9NRY4 1499 aa16.18■□□□□ 0.18
LDHC-202ENST00000396215 SAMD9LQ8IVG5 1584 aa16.17■□□□□ 0.18
LDHC-202ENST00000396215 LRRIQ1Q96JM4 1722 aa16.16■□□□□ 0.18
LDHC-202ENST00000396215 CLTCQ00610 1675 aaKnown RBP16.16■□□□□ 0.18
LDHC-202ENST00000396215 PLXNC1O60486 1568 aa16.16■□□□□ 0.18
LDHC-202ENST00000396215 PIP4K2BP78356 416 aa16.15■□□□□ 0.18
LDHC-202ENST00000396215 A2ML1A8K2U0 1454 aa16.15■□□□□ 0.18
LDHC-202ENST00000396215 SHANK2Q9UPX8 1470 aa16.15■□□□□ 0.18
LDHC-202ENST00000396215 DNMT1P26358 1616 aaKnown RBP16.14■□□□□ 0.17
LDHC-202ENST00000396215 CDC42BPAQ5VT25 1732 aa16.13■□□□□ 0.17
LDHC-202ENST00000396215 SPAG9O60271 1321 aaKnown RBP16.12■□□□□ 0.17
LDHC-202ENST00000396215 ALKQ9UM73 1620 aa16.12■□□□□ 0.17
LDHC-202ENST00000396215 NEURL4Q96JN8 1562 aa16.11■□□□□ 0.17
LDHC-202ENST00000396215 A2MP01023 1474 aa16.1■□□□□ 0.17
LDHC-202ENST00000396215 POLR1AO95602 1720 aaPredicted RBP16.1■□□□□ 0.17
LDHC-202ENST00000396215 KIAA1107Q9UPP5 1409 aa16.1■□□□□ 0.17
LDHC-202ENST00000396215 ATP7AQ04656 1500 aa16.09■□□□□ 0.17
LDHC-202ENST00000396215 CCDC18Q5T9S5 1454 aa16.09■□□□□ 0.17
LDHC-202ENST00000396215 CNKSR2Q8WXI2 1034 aa16.08■□□□□ 0.16
LDHC-202ENST00000396215 VWDEQ8N2E2 1590 aa16.08■□□□□ 0.16
LDHC-202ENST00000396215 INO80Q9ULG1 1556 aaPredicted RBP16.08■□□□□ 0.16
LDHC-202ENST00000396215 SYCP2Q9BX26 1530 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms