RNA–Protein interactions for RNA: ENST00000395859.2

VCPKMT-201, Transcript of valosin containing protein lysine methyltransferase, humanhuman

TSL 1 (best) BASIC

Gene VCPKMT, Length 795 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCPKMT-201ENST00000395859 FAM9AQ8IZU1 332 aaPredicted RBP23.82■■□□□ 1.4
VCPKMT-201ENST00000395859 LTBP4Q8N2S1 1624 aa23.81■■□□□ 1.4
VCPKMT-201ENST00000395859 MLECQ14165 292 aa23.8■■□□□ 1.4
VCPKMT-201ENST00000395859 PTPRTO14522 1441 aa23.79■■□□□ 1.4
VCPKMT-201ENST00000395859 IQSEC2Q5JU85 1478 aa23.76■■□□□ 1.39
VCPKMT-201ENST00000395859 CEBPAP49715 358 aaPredicted RBP23.76■■□□□ 1.39
VCPKMT-201ENST00000395859 SETD1BQ9UPS6 1966 aaKnown RBP23.76■■□□□ 1.39
VCPKMT-201ENST00000395859 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.75■■□□□ 1.39
VCPKMT-201ENST00000395859 HNRNPUL2Q1KMD3 747 aaKnown RBP23.75■■□□□ 1.39
VCPKMT-201ENST00000395859 ATP10AO60312 1499 aa23.75■■□□□ 1.39
VCPKMT-201ENST00000395859 C9orf84Q5VXU9 1444 aa23.73■■□□□ 1.39
VCPKMT-201ENST00000395859 PLEKHD1A6NEE1 506 aa23.72■■□□□ 1.39
VCPKMT-201ENST00000395859 UHRF1BP1Q6BDS2 1440 aa23.72■■□□□ 1.39
VCPKMT-201ENST00000395859 SCAPERQ9BY12 1400 aa23.7■■□□□ 1.38
VCPKMT-201ENST00000395859 PLCH2O75038 1416 aa23.67■■□□□ 1.38
VCPKMT-201ENST00000395859 NCOA1Q15788 1441 aa23.59■■□□□ 1.37
VCPKMT-201ENST00000395859 C3P01024 1663 aa23.59■■□□□ 1.37
VCPKMT-201ENST00000395859 KDM5CP41229 1560 aa23.57■■□□□ 1.36
VCPKMT-201ENST00000395859 REREQ9P2R6 1566 aa23.57■■□□□ 1.36
VCPKMT-201ENST00000395859 DIP2CQ9Y2E4 1556 aa23.53■■□□□ 1.36
VCPKMT-201ENST00000395859 TRAPPC8Q9Y2L5 1435 aa23.53■■□□□ 1.36
VCPKMT-201ENST00000395859 ZNF518AQ6AHZ1 1483 aa23.52■■□□□ 1.36
VCPKMT-201ENST00000395859 CDK13Q14004 1512 aaKnown RBP23.51■■□□□ 1.35
VCPKMT-201ENST00000395859 EFCAB2Q5VUJ9 269 aa23.49■■□□□ 1.35
VCPKMT-201ENST00000395859 AGLP35573 1532 aa23.49■■□□□ 1.35
VCPKMT-201ENST00000395859 MYO5CQ9NQX4 1742 aa23.47■■□□□ 1.35
VCPKMT-201ENST00000395859 AFAP1Q8N556 730 aa23.46■■□□□ 1.35
VCPKMT-201ENST00000395859 ABCA6Q8N139 1617 aa23.45■■□□□ 1.34
VCPKMT-201ENST00000395859 CSRNP3Q8WYN3 585 aa23.45■■□□□ 1.34
VCPKMT-201ENST00000395859 MLH3Q9UHC1 1453 aa23.44■■□□□ 1.34
VCPKMT-201ENST00000395859 CAMSAP1Q5T5Y3 1602 aa23.44■■□□□ 1.34
VCPKMT-201ENST00000395859 ZNF335Q9H4Z2 1342 aaPredicted RBP23.42■■□□□ 1.34
VCPKMT-201ENST00000395859 UBAP1LF5GYI3 381 aa23.42■■□□□ 1.34
VCPKMT-201ENST00000395859 MED1Q15648 1581 aaPredicted RBP23.4■■□□□ 1.34
VCPKMT-201ENST00000395859 KIF14Q15058 1648 aa23.39■■□□□ 1.33
VCPKMT-201ENST00000395859 NPATQ14207 1427 aa23.39■■□□□ 1.33
VCPKMT-201ENST00000395859 CNTLNQ9NXG0 1405 aa23.38■■□□□ 1.33
VCPKMT-201ENST00000395859 RANGAP1P46060 587 aaPredicted RBP23.36■■□□□ 1.33
VCPKMT-201ENST00000395859 PLA2R1Q13018 1463 aa23.34■■□□□ 1.33
VCPKMT-201ENST00000395859 TCOF1Q13428 1488 aaKnown RBP23.34■■□□□ 1.33
VCPKMT-201ENST00000395859 NCKAP5LQ9HCH0 1330 aa23.33■■□□□ 1.33
VCPKMT-201ENST00000395859 ARHGAP5Q13017 1502 aa23.33■■□□□ 1.33
VCPKMT-201ENST00000395859 MROH2AA6NES4 1674 aa23.33■■□□□ 1.33
VCPKMT-201ENST00000395859 ZNF142P52746 1687 aaPredicted RBP23.3■■□□□ 1.32
VCPKMT-201ENST00000395859 HSPA1LP34931 641 aa23.3■■□□□ 1.32
VCPKMT-201ENST00000395859 KIDINS220Q9ULH0 1771 aa23.29■■□□□ 1.32
VCPKMT-201ENST00000395859 CDC42BPBQ9Y5S2 1711 aa23.29■■□□□ 1.32
VCPKMT-201ENST00000395859 TROQ12816 1431 aaPredicted RBP23.28■■□□□ 1.32
VCPKMT-201ENST00000395859 PKD2Q13563 968 aa23.28■■□□□ 1.32
VCPKMT-201ENST00000395859 ESF1Q9H501 851 aaKnown RBP23.28■■□□□ 1.32
VCPKMT-201ENST00000395859 ABCC1P33527 1531 aa23.28■■□□□ 1.32
VCPKMT-201ENST00000395859 ZMYM3Q14202 1370 aa23.27■■□□□ 1.31
VCPKMT-201ENST00000395859 MYO3AQ8NEV4 1616 aa23.24■■□□□ 1.31
VCPKMT-201ENST00000395859 ITSN2Q9NZM3 1697 aa23.23■■□□□ 1.31
VCPKMT-201ENST00000395859 CEP170BQ9Y4F5 1589 aaPredicted RBP23.23■■□□□ 1.31
VCPKMT-201ENST00000395859 MYT1LQ9UL68 1186 aa23.22■■□□□ 1.31
VCPKMT-201ENST00000395859 CDK11AQ9UQ88 783 aaPredicted RBP23.22■■□□□ 1.31
VCPKMT-201ENST00000395859 EEA1Q15075 1411 aa23.21■■□□□ 1.31
VCPKMT-201ENST00000395859 PREX2Q70Z35 1606 aa23.2■■□□□ 1.3
VCPKMT-201ENST00000395859 PTPRKQ15262 1439 aa23.2■■□□□ 1.3
VCPKMT-201ENST00000395859 FMN1Q68DA7 1419 aa23.19■■□□□ 1.3
VCPKMT-201ENST00000395859 ALKQ9UM73 1620 aa23.17■■□□□ 1.3
VCPKMT-201ENST00000395859 PPP6R1Q9UPN7 881 aa23.16■■□□□ 1.3
VCPKMT-201ENST00000395859 LRRIQ1Q96JM4 1722 aa23.16■■□□□ 1.3
VCPKMT-201ENST00000395859 CLIP1P30622 1438 aa23.15■■□□□ 1.3
VCPKMT-201ENST00000395859 SAMD9LQ8IVG5 1584 aa23.14■■□□□ 1.3
VCPKMT-201ENST00000395859 CPS1P31327 1500 aa23.14■■□□□ 1.3
VCPKMT-201ENST00000395859 SUPT6HQ7KZ85 1726 aaKnown RBP23.14■■□□□ 1.3
VCPKMT-201ENST00000395859 CLTCQ00610 1675 aaKnown RBP23.13■■□□□ 1.29
VCPKMT-201ENST00000395859 PLXNC1O60486 1568 aa23.13■■□□□ 1.29
VCPKMT-201ENST00000395859 ARHGAP35Q9NRY4 1499 aa23.12■■□□□ 1.29
VCPKMT-201ENST00000395859 TOM1O60784 492 aa23.12■■□□□ 1.29
VCPKMT-201ENST00000395859 PIP4K2BP78356 416 aa23.11■■□□□ 1.29
VCPKMT-201ENST00000395859 NEURL4Q96JN8 1562 aa23.1■■□□□ 1.29
VCPKMT-201ENST00000395859 DNMT1P26358 1616 aaKnown RBP23.09■■□□□ 1.29
VCPKMT-201ENST00000395859 SHANK2Q9UPX8 1470 aa23.09■■□□□ 1.29
VCPKMT-201ENST00000395859 ATP1B4Q9UN42 357 aaPredicted RBP23.08■■□□□ 1.29
VCPKMT-201ENST00000395859 A2ML1A8K2U0 1454 aa23.08■■□□□ 1.29
VCPKMT-201ENST00000395859 SCAF1Q9H7N4 1312 aaKnown RBP23.07■■□□□ 1.28
VCPKMT-201ENST00000395859 CDC42BPAQ5VT25 1732 aa23.06■■□□□ 1.28
VCPKMT-201ENST00000395859 PHF23Q9BUL5 403 aaPredicted RBP23.04■■□□□ 1.28
VCPKMT-201ENST00000395859 VWDEQ8N2E2 1590 aa23.04■■□□□ 1.28
VCPKMT-201ENST00000395859 POLR1AO95602 1720 aaPredicted RBP23.03■■□□□ 1.28
VCPKMT-201ENST00000395859 RGS17Q9UGC6 210 aaPredicted RBP23.01■■□□□ 1.27
VCPKMT-201ENST00000395859 ATP7AQ04656 1500 aa23.01■■□□□ 1.27
VCPKMT-201ENST00000395859 INO80Q9ULG1 1556 aaPredicted RBP23.01■■□□□ 1.27
VCPKMT-201ENST00000395859 SYCP2Q9BX26 1530 aa23■■□□□ 1.27
VCPKMT-201ENST00000395859 A2MP01023 1474 aa22.99■■□□□ 1.27
VCPKMT-201ENST00000395859 SPAG9O60271 1321 aaKnown RBP22.99■■□□□ 1.27
VCPKMT-201ENST00000395859 KIAA1107Q9UPP5 1409 aa22.95■■□□□ 1.26
VCPKMT-201ENST00000395859 GPATCH8Q9UKJ3 1502 aaKnown RBP22.93■■□□□ 1.26
VCPKMT-201ENST00000395859 MED14O60244 1454 aa22.93■■□□□ 1.26
VCPKMT-201ENST00000395859 CCDC18Q5T9S5 1454 aa22.92■■□□□ 1.26
VCPKMT-201ENST00000395859 GGT6Q6P531 493 aa22.92■■□□□ 1.26
VCPKMT-201ENST00000395859 HNRNPMP52272 730 aaKnown RBP eCLIP22.91■■□□□ 1.26
VCPKMT-201ENST00000395859 CASKIN1Q8WXD9 1431 aa22.9■■□□□ 1.26
VCPKMT-201ENST00000395859 STRCP1A6NGW2 1772 aa22.89■■□□□ 1.26
VCPKMT-201ENST00000395859 DEPDC5O75140 1603 aa22.89■■□□□ 1.25
VCPKMT-201ENST00000395859 TNRQ92752 1358 aa22.88■■□□□ 1.25
VCPKMT-201ENST00000395859 LRRC7Q96NW7 1537 aa22.87■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms