RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 MYT1Q01538 1121 aa20.12■□□□□ 0.81
SNCA-204ENST00000394989 PPP1R15AO75807 674 aaPredicted RBP20.11■□□□□ 0.81
SNCA-204ENST00000394989 ABCC5O15440 1437 aa20.11■□□□□ 0.81
SNCA-204ENST00000394989 CHD1O14646 1710 aa20.09■□□□□ 0.81
SNCA-204ENST00000394989 GPATCH8Q9UKJ3 1502 aaKnown RBP20.08■□□□□ 0.81
SNCA-204ENST00000394989 ITSN2Q9NZM3 1697 aa20.07■□□□□ 0.8
SNCA-204ENST00000394989 ROCK1Q13464 1354 aa20.07■□□□□ 0.8
SNCA-204ENST00000394989 ATP10BO94823 1461 aa20.06■□□□□ 0.8
SNCA-204ENST00000394989 CAMSAP2Q08AD1 1489 aa20.06■□□□□ 0.8
SNCA-204ENST00000394989 KDM5BQ9UGL1 1544 aa20.05■□□□□ 0.8
SNCA-204ENST00000394989 TONSLQ96HA7 1378 aa20.05■□□□□ 0.8
SNCA-204ENST00000394989 CFDP1Q9UEE9 299 aaPredicted RBP20.01■□□□□ 0.79
SNCA-204ENST00000394989 TRIM52Q96A61 297 aa20.01■□□□□ 0.79
SNCA-204ENST00000394989 CDC42BPAQ5VT25 1732 aa20■□□□□ 0.79
SNCA-204ENST00000394989 ABCC10Q5T3U5 1492 aa19.99■□□□□ 0.79
SNCA-204ENST00000394989 MPHOSPH9Q99550 1183 aa19.99■□□□□ 0.79
SNCA-204ENST00000394989 SHROOM2Q13796 1616 aa19.99■□□□□ 0.79
SNCA-204ENST00000394989 CROCC2H7BZ55 1655 aa19.98■□□□□ 0.79
SNCA-204ENST00000394989 PTPRGP23470 1445 aa19.98■□□□□ 0.79
SNCA-204ENST00000394989 PLEKHD1A6NEE1 506 aa19.96■□□□□ 0.79
SNCA-204ENST00000394989 ADGBQ8N7X0 1667 aa19.95■□□□□ 0.78
SNCA-204ENST00000394989 HIRIP3Q9BW71 556 aaPredicted RBP19.95■□□□□ 0.78
SNCA-204ENST00000394989 NCOA1Q15788 1441 aa19.95■□□□□ 0.78
SNCA-204ENST00000394989 ZNF777Q9ULD5 760 aaPredicted RBP19.94■□□□□ 0.78
SNCA-204ENST00000394989 FOXD1Q16676 465 aa19.93■□□□□ 0.78
SNCA-204ENST00000394989 ADGRL2O95490 1459 aa19.92■□□□□ 0.78
SNCA-204ENST00000394989 ERCC6L2Q5T890 1561 aa19.92■□□□□ 0.78
SNCA-204ENST00000394989 DDX10Q13206 875 aaKnown RBP19.89■□□□□ 0.77
SNCA-204ENST00000394989 ANKRD30BQ9BXX2 1392 aa19.88■□□□□ 0.77
SNCA-204ENST00000394989 PZPP20742 1482 aa19.87■□□□□ 0.77
SNCA-204ENST00000394989 RPRD2Q5VT52 1461 aaKnown RBP19.84■□□□□ 0.77
SNCA-204ENST00000394989 SHANK2Q9UPX8 1470 aa19.83■□□□□ 0.77
SNCA-204ENST00000394989 SLC4A1APQ9BWU0 796 aaKnown RBP19.83■□□□□ 0.77
SNCA-204ENST00000394989 CDC42BPBQ9Y5S2 1711 aa19.83■□□□□ 0.77
SNCA-204ENST00000394989 ANKRD30AQ9BXX3 1397 aa19.82■□□□□ 0.76
SNCA-204ENST00000394989 CLASP1Q7Z460 1538 aa19.82■□□□□ 0.76
SNCA-204ENST00000394989 PREX2Q70Z35 1606 aa19.82■□□□□ 0.76
SNCA-204ENST00000394989 L3MBTL2Q969R5 705 aa19.81■□□□□ 0.76
SNCA-204ENST00000394989 C9orf84Q5VXU9 1444 aa19.81■□□□□ 0.76
SNCA-204ENST00000394989 KCNH8Q96L42 1107 aa19.81■□□□□ 0.76
SNCA-204ENST00000394989 ABCC2Q92887 1545 aa19.8■□□□□ 0.76
SNCA-204ENST00000394989 SAMD9LQ8IVG5 1584 aa19.8■□□□□ 0.76
SNCA-204ENST00000394989 TEX14Q8IWB6 1497 aa19.8■□□□□ 0.76
SNCA-204ENST00000394989 MBD5Q9P267 1494 aa19.8■□□□□ 0.76
SNCA-204ENST00000394989 ANKRD50Q9ULJ7 1429 aa19.79■□□□□ 0.76
SNCA-204ENST00000394989 ARHGEF5Q12774 1597 aa19.79■□□□□ 0.76
SNCA-204ENST00000394989 TTC37Q6PGP7 1564 aa19.78■□□□□ 0.76
SNCA-204ENST00000394989 HNRNPMP52272 730 aaKnown RBP eCLIP19.77■□□□□ 0.76
SNCA-204ENST00000394989 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.76■□□□□ 0.75
SNCA-204ENST00000394989 KIAA1107Q9UPP5 1409 aa19.73■□□□□ 0.75
SNCA-204ENST00000394989 HSPA5P11021 654 aaKnown RBP19.72■□□□□ 0.75
SNCA-204ENST00000394989 TSPY4P0CV99 314 aa19.71■□□□□ 0.75
SNCA-204ENST00000394989 TSPY10P0CW01 314 aa19.71■□□□□ 0.75
SNCA-204ENST00000394989 CCDC141Q6ZP82 1450 aa19.71■□□□□ 0.75
SNCA-204ENST00000394989 NBPF8Q3BBV2 869 aa19.71■□□□□ 0.75
SNCA-204ENST00000394989 KIF15Q9NS87 1388 aa19.7■□□□□ 0.74
SNCA-204ENST00000394989 PKD2Q13563 968 aa19.69■□□□□ 0.74
SNCA-204ENST00000394989 ZCCHC11Q5TAX3 1644 aaKnown RBP19.69■□□□□ 0.74
SNCA-204ENST00000394989 SYCP2Q9BX26 1530 aa19.69■□□□□ 0.74
SNCA-204ENST00000394989 KDM5DQ9BY66 1539 aa19.69■□□□□ 0.74
SNCA-204ENST00000394989 ARHGAP5Q13017 1502 aa19.68■□□□□ 0.74
SNCA-204ENST00000394989 MYO5CQ9NQX4 1742 aa19.68■□□□□ 0.74
SNCA-204ENST00000394989 WASHC2AQ641Q2 1341 aa19.67■□□□□ 0.74
SNCA-204ENST00000394989 NUP155O75694 1391 aa19.67■□□□□ 0.74
SNCA-204ENST00000394989 UHRF1BP1LA0JNW5 1464 aa19.66■□□□□ 0.74
SNCA-204ENST00000394989 EIF4G2P78344 907 aaKnown RBP eCLIP19.66■□□□□ 0.74
SNCA-204ENST00000394989 MAST1Q9Y2H9 1570 aa19.63■□□□□ 0.73
SNCA-204ENST00000394989 ANP32CO43423 234 aa19.63■□□□□ 0.73
SNCA-204ENST00000394989 RSPH4AQ5TD94 716 aa19.63■□□□□ 0.73
SNCA-204ENST00000394989 SPATA31E1Q6ZUB1 1445 aa19.61■□□□□ 0.73
SNCA-204ENST00000394989 ARHGEF12Q9NZN5 1544 aa19.61■□□□□ 0.73
SNCA-204ENST00000394989 CCER2I3L3R5 266 aa19.6■□□□□ 0.73
SNCA-204ENST00000394989 C11orf95C9JLR9 678 aaPredicted RBP19.6■□□□□ 0.73
SNCA-204ENST00000394989 PLCH2O75038 1416 aa19.58■□□□□ 0.72
SNCA-204ENST00000394989 FAM135AQ9P2D6 1515 aa19.57■□□□□ 0.72
SNCA-204ENST00000394989 PLXNC1O60486 1568 aa19.57■□□□□ 0.72
SNCA-204ENST00000394989 PLEKHH2Q8IVE3 1493 aa19.56■□□□□ 0.72
SNCA-204ENST00000394989 UNC13BO14795 1591 aa19.54■□□□□ 0.72
SNCA-204ENST00000394989 CCDC7Q96M83 1385 aa19.53■□□□□ 0.72
SNCA-204ENST00000394989 POLR1AO95602 1720 aaPredicted RBP19.53■□□□□ 0.72
SNCA-204ENST00000394989 ABCC1P33527 1531 aa19.52■□□□□ 0.72
SNCA-204ENST00000394989 CNTLNQ9NXG0 1405 aa19.51■□□□□ 0.71
SNCA-204ENST00000394989 UHRF1BP1Q6BDS2 1440 aa19.51■□□□□ 0.71
SNCA-204ENST00000394989 EFCAB2Q5VUJ9 269 aa19.48■□□□□ 0.71
SNCA-204ENST00000394989 TRAPPC8Q9Y2L5 1435 aa19.48■□□□□ 0.71
SNCA-204ENST00000394989 DUOX2Q9NRD8 1548 aa19.48■□□□□ 0.71
SNCA-204ENST00000394989 ZNF326Q5BKZ1 582 aaKnown RBP19.48■□□□□ 0.71
SNCA-204ENST00000394989 KIF7Q2M1P5 1343 aa19.47■□□□□ 0.71
SNCA-204ENST00000394989 KDM5CP41229 1560 aa19.47■□□□□ 0.71
SNCA-204ENST00000394989 IQGAP3Q86VI3 1631 aa19.47■□□□□ 0.71
SNCA-204ENST00000394989 BCORL1Q5H9F3 1711 aa19.46■□□□□ 0.71
SNCA-204ENST00000394989 PLA2R1Q13018 1463 aa19.45■□□□□ 0.7
SNCA-204ENST00000394989 RALGAPBQ86X10 1494 aa19.45■□□□□ 0.7
SNCA-204ENST00000394989 USP47Q96K76 1375 aa19.45■□□□□ 0.7
SNCA-204ENST00000394989 ARAP3Q8WWN8 1544 aa19.45■□□□□ 0.7
SNCA-204ENST00000394989 MAGI2Q86UL8 1455 aa19.45■□□□□ 0.7
SNCA-204ENST00000394989 WDR7Q9Y4E6 1490 aa19.45■□□□□ 0.7
SNCA-204ENST00000394989 ERBINQ96RT1 1412 aa19.44■□□□□ 0.7
SNCA-204ENST00000394989 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.42■□□□□ 0.7
SNCA-204ENST00000394989 ABCA9Q8IUA7 1624 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms