RNA–Protein interactions for RNA: ENST00000394456.9

GTF2F1-201, Transcript of general transcription factor IIF subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF2F1, Length 2,731 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2F1-201ENST00000394456 KDM6BO15054 1643 aa19.13■□□□□ 0.65
GTF2F1-201ENST00000394456 ABCA8O94911 1581 aa19.13■□□□□ 0.65
GTF2F1-201ENST00000394456 TRIM52Q96A61 297 aa19.13■□□□□ 0.65
GTF2F1-201ENST00000394456 TIMELESSQ9UNS1 1208 aa19.12■□□□□ 0.65
GTF2F1-201ENST00000394456 FOXD1Q16676 465 aa19.11■□□□□ 0.65
GTF2F1-201ENST00000394456 DAPK1P53355 1430 aa19.09■□□□□ 0.65
GTF2F1-201ENST00000394456 ATP10BO94823 1461 aa19.08■□□□□ 0.65
GTF2F1-201ENST00000394456 ZNF777Q9ULD5 760 aaPredicted RBP19.08■□□□□ 0.65
GTF2F1-201ENST00000394456 DNMT1P26358 1616 aaKnown RBP19.08■□□□□ 0.64
GTF2F1-201ENST00000394456 PTPRGP23470 1445 aa19.08■□□□□ 0.64
GTF2F1-201ENST00000394456 CFDP1Q9UEE9 299 aaPredicted RBP19.08■□□□□ 0.64
GTF2F1-201ENST00000394456 ADCY10Q96PN6 1610 aa19.08■□□□□ 0.64
GTF2F1-201ENST00000394456 DENND4BO75064 1496 aaPredicted RBP19.07■□□□□ 0.64
GTF2F1-201ENST00000394456 ABCC5O15440 1437 aa19.07■□□□□ 0.64
GTF2F1-201ENST00000394456 ITSN2Q9NZM3 1697 aa19.07■□□□□ 0.64
GTF2F1-201ENST00000394456 KDM5BQ9UGL1 1544 aa19.06■□□□□ 0.64
GTF2F1-201ENST00000394456 GPATCH8Q9UKJ3 1502 aaKnown RBP19.06■□□□□ 0.64
GTF2F1-201ENST00000394456 PLEKHD1A6NEE1 506 aa19.06■□□□□ 0.64
GTF2F1-201ENST00000394456 AKNAQ7Z591 1439 aa19.05■□□□□ 0.64
GTF2F1-201ENST00000394456 CAMSAP2Q08AD1 1489 aa19.05■□□□□ 0.64
GTF2F1-201ENST00000394456 ANP32CO43423 234 aa19.04■□□□□ 0.64
GTF2F1-201ENST00000394456 FKBP8Q14318 412 aa19.03■□□□□ 0.64
GTF2F1-201ENST00000394456 ERCC6L2Q5T890 1561 aa19.03■□□□□ 0.64
GTF2F1-201ENST00000394456 SHROOM2Q13796 1616 aa19.02■□□□□ 0.63
GTF2F1-201ENST00000394456 CDC42BPAQ5VT25 1732 aa19.01■□□□□ 0.63
GTF2F1-201ENST00000394456 TSHZ2Q9NRE2 1034 aa19■□□□□ 0.63
GTF2F1-201ENST00000394456 ROCK1Q13464 1354 aa18.98■□□□□ 0.63
GTF2F1-201ENST00000394456 HSPA5P11021 654 aaKnown RBP18.98■□□□□ 0.63
GTF2F1-201ENST00000394456 ABCC10Q5T3U5 1492 aa18.97■□□□□ 0.63
GTF2F1-201ENST00000394456 MPHOSPH9Q99550 1183 aa18.96■□□□□ 0.63
GTF2F1-201ENST00000394456 WASHC2AQ641Q2 1341 aa18.95■□□□□ 0.62
GTF2F1-201ENST00000394456 CCER2I3L3R5 266 aa18.94■□□□□ 0.62
GTF2F1-201ENST00000394456 CROCC2H7BZ55 1655 aa18.94■□□□□ 0.62
GTF2F1-201ENST00000394456 L3MBTL2Q969R5 705 aa18.94■□□□□ 0.62
GTF2F1-201ENST00000394456 ADGBQ8N7X0 1667 aa18.93■□□□□ 0.62
GTF2F1-201ENST00000394456 C11orf95C9JLR9 678 aaPredicted RBP18.92■□□□□ 0.62
GTF2F1-201ENST00000394456 NCOA1Q15788 1441 aa18.9■□□□□ 0.62
GTF2F1-201ENST00000394456 CCDC184Q52MB2 194 aa18.9■□□□□ 0.62
GTF2F1-201ENST00000394456 CLASP1Q7Z460 1538 aa18.89■□□□□ 0.61
GTF2F1-201ENST00000394456 NBPF8Q3BBV2 869 aa18.87■□□□□ 0.61
GTF2F1-201ENST00000394456 CDC42BPBQ9Y5S2 1711 aa18.87■□□□□ 0.61
GTF2F1-201ENST00000394456 ABCC2Q92887 1545 aa18.86■□□□□ 0.61
GTF2F1-201ENST00000394456 HNRNPMP52272 730 aaKnown RBP eCLIP18.86■□□□□ 0.61
GTF2F1-201ENST00000394456 SLC4A1APQ9BWU0 796 aaKnown RBP18.86■□□□□ 0.61
GTF2F1-201ENST00000394456 ADGRL2O95490 1459 aa18.85■□□□□ 0.61
GTF2F1-201ENST00000394456 ANKRD30AQ9BXX3 1397 aa18.84■□□□□ 0.61
GTF2F1-201ENST00000394456 IRX6P78412 446 aaPredicted RBP18.83■□□□□ 0.61
GTF2F1-201ENST00000394456 HNRNPUQ00839 825 aaKnown RBP eCLIP18.83■□□□□ 0.61
GTF2F1-201ENST00000394456 TTC37Q6PGP7 1564 aa18.83■□□□□ 0.61
GTF2F1-201ENST00000394456 PREX2Q70Z35 1606 aa18.83■□□□□ 0.6
GTF2F1-201ENST00000394456 C9orf84Q5VXU9 1444 aa18.83■□□□□ 0.6
GTF2F1-201ENST00000394456 EIF4G2P78344 907 aaKnown RBP eCLIP18.82■□□□□ 0.6
GTF2F1-201ENST00000394456 SAMD9LQ8IVG5 1584 aa18.82■□□□□ 0.6
GTF2F1-201ENST00000394456 PZPP20742 1482 aa18.81■□□□□ 0.6
GTF2F1-201ENST00000394456 ANKRD30BQ9BXX2 1392 aa18.8■□□□□ 0.6
GTF2F1-201ENST00000394456 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.8■□□□□ 0.6
GTF2F1-201ENST00000394456 TSPY4P0CV99 314 aa18.8■□□□□ 0.6
GTF2F1-201ENST00000394456 TSPY10P0CW01 314 aa18.8■□□□□ 0.6
GTF2F1-201ENST00000394456 CNGB1Q14028 1251 aaPredicted RBP18.8■□□□□ 0.6
GTF2F1-201ENST00000394456 ANKRD50Q9ULJ7 1429 aa18.79■□□□□ 0.6
GTF2F1-201ENST00000394456 ZCCHC11Q5TAX3 1644 aaKnown RBP18.78■□□□□ 0.6
GTF2F1-201ENST00000394456 SHANK2Q9UPX8 1470 aa18.78■□□□□ 0.6
GTF2F1-201ENST00000394456 MBD5Q9P267 1494 aa18.77■□□□□ 0.6
GTF2F1-201ENST00000394456 ARHGAP5Q13017 1502 aa18.77■□□□□ 0.6
GTF2F1-201ENST00000394456 NEFLP07196 543 aa18.77■□□□□ 0.6
GTF2F1-201ENST00000394456 ARHGEF5Q12774 1597 aa18.76■□□□□ 0.59
GTF2F1-201ENST00000394456 MYO5CQ9NQX4 1742 aa18.75■□□□□ 0.59
GTF2F1-201ENST00000394456 RPRD2Q5VT52 1461 aaKnown RBP18.75■□□□□ 0.59
GTF2F1-201ENST00000394456 SYCP2Q9BX26 1530 aa18.75■□□□□ 0.59
GTF2F1-201ENST00000394456 KIF15Q9NS87 1388 aa18.74■□□□□ 0.59
GTF2F1-201ENST00000394456 CCDC141Q6ZP82 1450 aa18.73■□□□□ 0.59
GTF2F1-201ENST00000394456 ZNF326Q5BKZ1 582 aaKnown RBP18.73■□□□□ 0.59
GTF2F1-201ENST00000394456 CCDC7Q96M83 1385 aa18.73■□□□□ 0.59
GTF2F1-201ENST00000394456 PKD2Q13563 968 aa18.73■□□□□ 0.59
GTF2F1-201ENST00000394456 TEX14Q8IWB6 1497 aa18.72■□□□□ 0.59
GTF2F1-201ENST00000394456 FAM9BQ8IZU0 186 aa18.71■□□□□ 0.59
GTF2F1-201ENST00000394456 CNTLNQ9NXG0 1405 aa18.71■□□□□ 0.59
GTF2F1-201ENST00000394456 NUP155O75694 1391 aa18.71■□□□□ 0.59
GTF2F1-201ENST00000394456 UHRF1BP1LA0JNW5 1464 aa18.7■□□□□ 0.58
GTF2F1-201ENST00000394456 SENP3-EIF4A1A0A087X0R7 540 aa18.69■□□□□ 0.58
GTF2F1-201ENST00000394456 KIAA1107Q9UPP5 1409 aa18.69■□□□□ 0.58
GTF2F1-201ENST00000394456 KIF7Q2M1P5 1343 aa18.69■□□□□ 0.58
GTF2F1-201ENST00000394456 POLR3GLQ9BT43 218 aa18.68■□□□□ 0.58
GTF2F1-201ENST00000394456 PRKRIP1Q9H875 184 aaPredicted RBP18.68■□□□□ 0.58
GTF2F1-201ENST00000394456 MRS2Q9HD23 443 aa18.64■□□□□ 0.57
GTF2F1-201ENST00000394456 ARHGEF12Q9NZN5 1544 aa18.64■□□□□ 0.57
GTF2F1-201ENST00000394456 RSPH4AQ5TD94 716 aa18.64■□□□□ 0.57
GTF2F1-201ENST00000394456 SPATA31E1Q6ZUB1 1445 aa18.63■□□□□ 0.57
GTF2F1-201ENST00000394456 PLCH2O75038 1416 aa18.62■□□□□ 0.57
GTF2F1-201ENST00000394456 RBM19Q9Y4C8 960 aaKnown RBP18.61■□□□□ 0.57
GTF2F1-201ENST00000394456 KDM5DQ9BY66 1539 aa18.6■□□□□ 0.57
GTF2F1-201ENST00000394456 MAST1Q9Y2H9 1570 aa18.59■□□□□ 0.57
GTF2F1-201ENST00000394456 EFCAB2Q5VUJ9 269 aa18.59■□□□□ 0.57
GTF2F1-201ENST00000394456 PLEKHH2Q8IVE3 1493 aa18.59■□□□□ 0.57
GTF2F1-201ENST00000394456 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.58■□□□□ 0.563e-7■■■■□ 20
GTF2F1-201ENST00000394456 FAM135AQ9P2D6 1515 aa18.57■□□□□ 0.56
GTF2F1-201ENST00000394456 ABCC1P33527 1531 aa18.56■□□□□ 0.56
GTF2F1-201ENST00000394456 WDR7Q9Y4E6 1490 aa18.55■□□□□ 0.56
GTF2F1-201ENST00000394456 TRAPPC8Q9Y2L5 1435 aa18.55■□□□□ 0.56
GTF2F1-201ENST00000394456 PLXNC1O60486 1568 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms