RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 GOLGA3Q08378 1498 aa14.91□□□□□ -0.02
SYNPO-202ENST00000394243 A0A0U1RQG5 324 aaPredicted RBP14.91□□□□□ -0.02
SYNPO-202ENST00000394243 SLC4A3P48751 1232 aa14.9□□□□□ -0.02
SYNPO-202ENST00000394243 RWDD1Q9H446 243 aaPredicted RBP14.9□□□□□ -0.02
SYNPO-202ENST00000394243 FAM13BQ9NYF5 915 aa14.9□□□□□ -0.02
SYNPO-202ENST00000394243 NCBP3Q53F19 620 aaKnown RBP14.89□□□□□ -0.03
SYNPO-202ENST00000394243 KIAA1211Q6ZU35 1233 aa14.89□□□□□ -0.03
SYNPO-202ENST00000394243 TPM4P67936 248 aa14.89□□□□□ -0.03
SYNPO-202ENST00000394243 DDX11L8A8MPP1 907 aa14.88□□□□□ -0.03
SYNPO-202ENST00000394243 RSF1Q96T23 1441 aaPredicted RBP14.88□□□□□ -0.03
SYNPO-202ENST00000394243 PKNOX2Q96KN3 472 aa14.87□□□□□ -0.03
SYNPO-202ENST00000394243 HTATSF1O43719 755 aaKnown RBP14.87□□□□□ -0.03
SYNPO-202ENST00000394243 HSPA5P11021 654 aaKnown RBP14.86□□□□□ -0.03
SYNPO-202ENST00000394243 PPP1R15AO75807 674 aaPredicted RBP14.86□□□□□ -0.03
SYNPO-202ENST00000394243 PHF14O94880 888 aa14.85□□□□□ -0.03
SYNPO-202ENST00000394243 FANCIQ9NVI1 1328 aa14.85□□□□□ -0.03
SYNPO-202ENST00000394243 CLSTN1O94985 981 aa14.85□□□□□ -0.03
SYNPO-202ENST00000394243 PMFBP1Q8TBY8 1022 aa14.85□□□□□ -0.03
SYNPO-202ENST00000394243 ITPRIPQ8IWB1 547 aa14.84□□□□□ -0.03
SYNPO-202ENST00000394243 ANO8Q9HCE9 1232 aaPredicted RBP14.84□□□□□ -0.03
SYNPO-202ENST00000394243 TMF1P82094 1093 aa14.84□□□□□ -0.03
SYNPO-202ENST00000394243 FOXD4L5Q5VV16 416 aaPredicted RBP14.83□□□□□ -0.04
SYNPO-202ENST00000394243 FOXD4L4Q8WXT5 416 aaPredicted RBP14.83□□□□□ -0.04
SYNPO-202ENST00000394243 IPO8O15397 1037 aaKnown RBP14.83□□□□□ -0.04
SYNPO-202ENST00000394243 NPM1P06748 294 aaKnown RBP eCLIP14.83□□□□□ -0.04
SYNPO-202ENST00000394243 PDE4AP27815 886 aa14.83□□□□□ -0.04
SYNPO-202ENST00000394243 CSPP1Q1MSJ5 1256 aa14.82□□□□□ -0.04
SYNPO-202ENST00000394243 DDX49Q9Y6V7 483 aaKnown RBP14.82□□□□□ -0.04
SYNPO-202ENST00000394243 NOL8Q76FK4 1167 aaKnown RBP14.81□□□□□ -0.04
SYNPO-202ENST00000394243 SCRIBQ14160 1630 aa14.81□□□□□ -0.04
SYNPO-202ENST00000394243 HSP90B1P14625 803 aaKnown RBP14.8□□□□□ -0.04
SYNPO-202ENST00000394243 CALRP27797 417 aaKnown RBP14.8□□□□□ -0.04
SYNPO-202ENST00000394243 GOLGA2Q08379 1002 aa14.8□□□□□ -0.04
SYNPO-202ENST00000394243 KTN1Q86UP2 1357 aaKnown RBP14.79□□□□□ -0.04
SYNPO-202ENST00000394243 CCAR2Q8N163 923 aaKnown RBP14.78□□□□□ -0.04
SYNPO-202ENST00000394243 DCAF11Q8TEB1 546 aa14.78□□□□□ -0.04
SYNPO-202ENST00000394243 SKOR2Q2VWA4 1001 aaPredicted RBP14.78□□□□□ -0.04
SYNPO-202ENST00000394243 TNIKQ9UKE5 1360 aa14.78□□□□□ -0.04
SYNPO-202ENST00000394243 MORC1Q86VD1 984 aa14.77□□□□□ -0.04
SYNPO-202ENST00000394243 FAM43AQ8N2R8 423 aa14.77□□□□□ -0.04
SYNPO-202ENST00000394243 ZNF592Q92610 1267 aa14.77□□□□□ -0.04
SYNPO-202ENST00000394243 EEA1Q15075 1411 aa14.76□□□□□ -0.05
SYNPO-202ENST00000394243 PRKCSHP14314 528 aaPredicted RBP14.76□□□□□ -0.05
SYNPO-202ENST00000394243 FAM161AQ3B820 660 aa14.76□□□□□ -0.05
SYNPO-202ENST00000394243 POGKQ9P215 609 aa14.76□□□□□ -0.05
SYNPO-202ENST00000394243 CCNB3Q8WWL7 1395 aa14.76□□□□□ -0.05
SYNPO-202ENST00000394243 TPM3P06753 285 aa14.76□□□□□ -0.05
SYNPO-202ENST00000394243 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.76□□□□□ -0.05
SYNPO-202ENST00000394243 PDE4CQ08493 712 aa14.75□□□□□ -0.05
SYNPO-202ENST00000394243 CREBRFQ8IUR6 639 aa14.75□□□□□ -0.05
SYNPO-202ENST00000394243 GPS2Q13227 327 aa14.75□□□□□ -0.05
SYNPO-202ENST00000394243 PATL2C9JE40 543 aaKnown RBP14.75□□□□□ -0.05
SYNPO-202ENST00000394243 CFDP1Q9UEE9 299 aaPredicted RBP14.75□□□□□ -0.05
SYNPO-202ENST00000394243 TRIM6-TRIM34B2RNG4 842 aa14.74□□□□□ -0.05
SYNPO-202ENST00000394243 ST18O60284 1047 aa14.74□□□□□ -0.05
SYNPO-202ENST00000394243 KCNH8Q96L42 1107 aa14.74□□□□□ -0.05
SYNPO-202ENST00000394243 TEX35Q5T0J7 233 aa14.74□□□□□ -0.05
SYNPO-202ENST00000394243 PODXL2Q9NZ53 605 aa14.74□□□□□ -0.05
SYNPO-202ENST00000394243 FOXD4L6Q3SYB3 417 aaPredicted RBP14.72□□□□□ -0.05
SYNPO-202ENST00000394243 FOXD4L3Q6VB84 417 aaPredicted RBP14.72□□□□□ -0.05
SYNPO-202ENST00000394243 CLUAP1Q96AJ1 413 aa14.72□□□□□ -0.05
SYNPO-202ENST00000394243 RALBP1Q15311 655 aa14.72□□□□□ -0.05
SYNPO-202ENST00000394243 GOLGA6L19H0YKK7 550 aa14.71□□□□□ -0.06
SYNPO-202ENST00000394243 PLEKHD1A6NEE1 506 aa14.7□□□□□ -0.06
SYNPO-202ENST00000394243 HAP1P54257 671 aaPredicted RBP14.7□□□□□ -0.06
SYNPO-202ENST00000394243 CENPQQ7L2Z9 268 aaPredicted RBP14.7□□□□□ -0.06
SYNPO-202ENST00000394243 SMC4Q9NTJ3 1288 aa14.7□□□□□ -0.06
SYNPO-202ENST00000394243 APPP05067 770 aa14.69□□□□□ -0.06
SYNPO-202ENST00000394243 CCDC34Q96HJ3 373 aa14.69□□□□□ -0.06
SYNPO-202ENST00000394243 ISY1Q9ULR0 285 aaKnown RBP14.69□□□□□ -0.06
SYNPO-202ENST00000394243 NPHP1O15259 732 aa14.68□□□□□ -0.06
SYNPO-202ENST00000394243 SETD5Q9C0A6 1442 aa14.68□□□□□ -0.06
SYNPO-202ENST00000394243 KIF16BQ96L93 1317 aa14.68□□□□□ -0.06
SYNPO-202ENST00000394243 R3HCC1Q9Y3T6 440 aaKnown RBP14.68□□□□□ -0.06
SYNPO-202ENST00000394243 IL27Q8NEV9 243 aa14.67□□□□□ -0.06
SYNPO-202ENST00000394243 U2AF1L5P0DN76 240 aaPredicted RBP14.67□□□□□ -0.06
SYNPO-202ENST00000394243 U2AF1Q01081 240 aaKnown RBP eCLIP14.67□□□□□ -0.06
SYNPO-202ENST00000394243 RTF1Q92541 710 aaKnown RBP14.67□□□□□ -0.06
SYNPO-202ENST00000394243 BECN2A8MW95 431 aa14.66□□□□□ -0.06
SYNPO-202ENST00000394243 EXOC6Q8TAG9 804 aa14.66□□□□□ -0.06
SYNPO-202ENST00000394243 CEP164Q9UPV0 1460 aa14.66□□□□□ -0.06
SYNPO-202ENST00000394243 SOX12O15370 315 aa14.66□□□□□ -0.06
SYNPO-202ENST00000394243 LMOD2Q6P5Q4 547 aa14.66□□□□□ -0.06
SYNPO-202ENST00000394243 SF3A1Q15459 793 aaKnown RBP14.66□□□□□ -0.06
SYNPO-202ENST00000394243 CENPJQ9HC77 1338 aaPredicted RBP14.65□□□□□ -0.06
SYNPO-202ENST00000394243 PLIN1O60240 522 aa14.65□□□□□ -0.06
SYNPO-202ENST00000394243 PDE3BQ13370 1112 aa14.65□□□□□ -0.06
SYNPO-202ENST00000394243 NFKBIBQ15653 356 aa14.65□□□□□ -0.06
SYNPO-202ENST00000394243 NOM1Q5C9Z4 860 aaKnown RBP14.65□□□□□ -0.06
SYNPO-202ENST00000394243 MAP7D2Q96T17 732 aa14.65□□□□□ -0.06
SYNPO-202ENST00000394243 BRPF3Q9ULD4 1205 aa14.65□□□□□ -0.06
SYNPO-202ENST00000394243 CCDC146Q8IYE0 955 aa14.64□□□□□ -0.07
SYNPO-202ENST00000394243 SRPK2P78362 688 aaKnown RBP14.63□□□□□ -0.07
SYNPO-202ENST00000394243 PES1O00541 588 aaKnown RBP14.63□□□□□ -0.07
SYNPO-202ENST00000394243 MTERF4Q7Z6M4 381 aaKnown RBP14.63□□□□□ -0.07
SYNPO-202ENST00000394243 FOXD1Q16676 465 aa14.63□□□□□ -0.07
SYNPO-202ENST00000394243 RASSF8Q8NHQ8 419 aa14.62□□□□□ -0.07
SYNPO-202ENST00000394243 CHMP7Q8WUX9 453 aaPredicted RBP14.62□□□□□ -0.07
SYNPO-202ENST00000394243 BCL11BQ9C0K0 894 aaPredicted RBP14.62□□□□□ -0.07
SYNPO-202ENST00000394243 CRBNQ96SW2 442 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms