RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 FOXD1Q16676 465 aa19.13■□□□□ 0.65
CCDC3-202ENST00000378839 TRIM52Q96A61 297 aa19.13■□□□□ 0.65
CCDC3-202ENST00000378839 DNMT1P26358 1616 aaKnown RBP19.12■□□□□ 0.65
CCDC3-202ENST00000378839 KIF14Q15058 1648 aa19.12■□□□□ 0.65
CCDC3-202ENST00000378839 MPHOSPH9Q99550 1183 aa19.11■□□□□ 0.65
CCDC3-202ENST00000378839 TROQ12816 1431 aaPredicted RBP19.1■□□□□ 0.65
CCDC3-202ENST00000378839 ROCK1Q13464 1354 aa19.07■□□□□ 0.64
CCDC3-202ENST00000378839 GPATCH8Q9UKJ3 1502 aaKnown RBP19.07■□□□□ 0.64
CCDC3-202ENST00000378839 CDK11AQ9UQ88 783 aaPredicted RBP19.05■□□□□ 0.64
CCDC3-202ENST00000378839 CAMSAP2Q08AD1 1489 aa19.05■□□□□ 0.64
CCDC3-202ENST00000378839 CARMIL2Q6F5E8 1435 aa19.03■□□□□ 0.64
CCDC3-202ENST00000378839 ADCY10Q96PN6 1610 aa19.03■□□□□ 0.64
CCDC3-202ENST00000378839 ABCA8O94911 1581 aa19.03■□□□□ 0.64
CCDC3-202ENST00000378839 CFDP1Q9UEE9 299 aaPredicted RBP19.01■□□□□ 0.63
CCDC3-202ENST00000378839 ANKRD30BQ9BXX2 1392 aa19■□□□□ 0.63
CCDC3-202ENST00000378839 ATP10BO94823 1461 aa19■□□□□ 0.63
CCDC3-202ENST00000378839 L3MBTL2Q969R5 705 aa18.99■□□□□ 0.63
CCDC3-202ENST00000378839 ZNF777Q9ULD5 760 aaPredicted RBP18.99■□□□□ 0.63
CCDC3-202ENST00000378839 NCOA1Q15788 1441 aa18.97■□□□□ 0.63
CCDC3-202ENST00000378839 ITSN2Q9NZM3 1697 aa18.96■□□□□ 0.63
CCDC3-202ENST00000378839 PZPP20742 1482 aa18.96■□□□□ 0.63
CCDC3-202ENST00000378839 ABCC10Q5T3U5 1492 aa18.96■□□□□ 0.63
CCDC3-202ENST00000378839 HSPA5P11021 654 aaKnown RBP18.95■□□□□ 0.62
CCDC3-202ENST00000378839 CDC42BPAQ5VT25 1732 aa18.94■□□□□ 0.62
CCDC3-202ENST00000378839 CROCC2H7BZ55 1655 aa18.94■□□□□ 0.62
CCDC3-202ENST00000378839 RPRD2Q5VT52 1461 aaKnown RBP18.93■□□□□ 0.62
CCDC3-202ENST00000378839 NBPF8Q3BBV2 869 aa18.93■□□□□ 0.62
CCDC3-202ENST00000378839 WASHC2AQ641Q2 1341 aa18.92■□□□□ 0.62
CCDC3-202ENST00000378839 SLC4A1APQ9BWU0 796 aaKnown RBP18.92■□□□□ 0.62
CCDC3-202ENST00000378839 TEX14Q8IWB6 1497 aa18.92■□□□□ 0.62
CCDC3-202ENST00000378839 ADGBQ8N7X0 1667 aa18.91■□□□□ 0.62
CCDC3-202ENST00000378839 ADGRL2O95490 1459 aa18.91■□□□□ 0.62
CCDC3-202ENST00000378839 PLEKHD1A6NEE1 506 aa18.9■□□□□ 0.62
CCDC3-202ENST00000378839 MYT1Q01538 1121 aa18.9■□□□□ 0.62
CCDC3-202ENST00000378839 CHD1O14646 1710 aa18.9■□□□□ 0.62
CCDC3-202ENST00000378839 C11orf95C9JLR9 678 aaPredicted RBP18.89■□□□□ 0.62
CCDC3-202ENST00000378839 SUPT16HQ9Y5B9 1047 aaKnown RBP18.89■□□□□ 0.61
CCDC3-202ENST00000378839 ANP32CO43423 234 aa18.87■□□□□ 0.61
CCDC3-202ENST00000378839 CCER2I3L3R5 266 aa18.87■□□□□ 0.61
CCDC3-202ENST00000378839 PTPRGP23470 1445 aa18.86■□□□□ 0.61
CCDC3-202ENST00000378839 ERCC6L2Q5T890 1561 aa18.84■□□□□ 0.61
CCDC3-202ENST00000378839 EIF4G2P78344 907 aaKnown RBP eCLIP18.83■□□□□ 0.6
CCDC3-202ENST00000378839 ANKRD30AQ9BXX3 1397 aa18.82■□□□□ 0.6
CCDC3-202ENST00000378839 HNRNPMP52272 730 aaKnown RBP eCLIP18.82■□□□□ 0.6
CCDC3-202ENST00000378839 ANKRD50Q9ULJ7 1429 aa18.82■□□□□ 0.6
CCDC3-202ENST00000378839 C9orf84Q5VXU9 1444 aa18.81■□□□□ 0.6
CCDC3-202ENST00000378839 MBD5Q9P267 1494 aa18.8■□□□□ 0.6
CCDC3-202ENST00000378839 PKD2Q13563 968 aa18.8■□□□□ 0.6
CCDC3-202ENST00000378839 KIAA1107Q9UPP5 1409 aa18.8■□□□□ 0.6
CCDC3-202ENST00000378839 SPATA31E1Q6ZUB1 1445 aa18.79■□□□□ 0.6
CCDC3-202ENST00000378839 SHROOM2Q13796 1616 aa18.79■□□□□ 0.6
CCDC3-202ENST00000378839 CDC42BPBQ9Y5S2 1711 aa18.78■□□□□ 0.6
CCDC3-202ENST00000378839 SHANK2Q9UPX8 1470 aa18.78■□□□□ 0.6
CCDC3-202ENST00000378839 SAMD9LQ8IVG5 1584 aa18.77■□□□□ 0.6
CCDC3-202ENST00000378839 CCDC7Q96M83 1385 aa18.75■□□□□ 0.59
CCDC3-202ENST00000378839 NUP155O75694 1391 aa18.73■□□□□ 0.59
CCDC3-202ENST00000378839 CCDC184Q52MB2 194 aa18.73■□□□□ 0.59
CCDC3-202ENST00000378839 ARHGEF5Q12774 1597 aa18.73■□□□□ 0.59
CCDC3-202ENST00000378839 TTC37Q6PGP7 1564 aa18.73■□□□□ 0.59
CCDC3-202ENST00000378839 PREX2Q70Z35 1606 aa18.73■□□□□ 0.59
CCDC3-202ENST00000378839 CNTLNQ9NXG0 1405 aa18.72■□□□□ 0.59
CCDC3-202ENST00000378839 KIF15Q9NS87 1388 aa18.72■□□□□ 0.59
CCDC3-202ENST00000378839 CLASP1Q7Z460 1538 aa18.71■□□□□ 0.59
CCDC3-202ENST00000378839 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.7■□□□□ 0.58
CCDC3-202ENST00000378839 TSPY4P0CV99 314 aa18.7■□□□□ 0.58
CCDC3-202ENST00000378839 TSPY10P0CW01 314 aa18.7■□□□□ 0.58
CCDC3-202ENST00000378839 KIF7Q2M1P5 1343 aa18.7■□□□□ 0.58
CCDC3-202ENST00000378839 KDM5DQ9BY66 1539 aa18.69■□□□□ 0.58
CCDC3-202ENST00000378839 SYCP2Q9BX26 1530 aa18.67■□□□□ 0.58
CCDC3-202ENST00000378839 CCDC141Q6ZP82 1450 aa18.66■□□□□ 0.58
CCDC3-202ENST00000378839 ZNF326Q5BKZ1 582 aaKnown RBP18.66■□□□□ 0.58
CCDC3-202ENST00000378839 BCORL1Q5H9F3 1711 aa18.66■□□□□ 0.58
CCDC3-202ENST00000378839 ABCC2Q92887 1545 aa18.66■□□□□ 0.58
CCDC3-202ENST00000378839 OSCARQ8IYS5 282 aa18.65■□□□□ 0.58
CCDC3-202ENST00000378839 POLR1AO95602 1720 aaPredicted RBP18.63■□□□□ 0.57
CCDC3-202ENST00000378839 PRKRIP1Q9H875 184 aaPredicted RBP18.63■□□□□ 0.57
CCDC3-202ENST00000378839 ARHGAP5Q13017 1502 aa18.62■□□□□ 0.57
CCDC3-202ENST00000378839 ARHGEF12Q9NZN5 1544 aa18.62■□□□□ 0.57
CCDC3-202ENST00000378839 FKBP8Q14318 412 aa18.62■□□□□ 0.57
CCDC3-202ENST00000378839 BCANQ96GW7 911 aa18.61■□□□□ 0.57
CCDC3-202ENST00000378839 USP47Q96K76 1375 aa18.61■□□□□ 0.57
CCDC3-202ENST00000378839 KDM5CP41229 1560 aa18.6■□□□□ 0.57
CCDC3-202ENST00000378839 FAM135AQ9P2D6 1515 aa18.6■□□□□ 0.57
CCDC3-202ENST00000378839 UHRF1BP1Q6BDS2 1440 aa18.6■□□□□ 0.57
CCDC3-202ENST00000378839 HNRNPUQ00839 825 aaKnown RBP eCLIP18.58■□□□□ 0.56
CCDC3-202ENST00000378839 ZCCHC11Q5TAX3 1644 aaKnown RBP18.57■□□□□ 0.56
CCDC3-202ENST00000378839 MAST1Q9Y2H9 1570 aa18.57■□□□□ 0.56
CCDC3-202ENST00000378839 KDM2AQ9Y2K7 1162 aa18.56■□□□□ 0.56
CCDC3-202ENST00000378839 MYO5CQ9NQX4 1742 aa18.56■□□□□ 0.56
CCDC3-202ENST00000378839 PLA2R1Q13018 1463 aa18.56■□□□□ 0.56
CCDC3-202ENST00000378839 RALGAPBQ86X10 1494 aa18.56■□□□□ 0.56
CCDC3-202ENST00000378839 DHX29Q7Z478 1369 aaKnown RBP18.56■□□□□ 0.56
CCDC3-202ENST00000378839 RSPH4AQ5TD94 716 aa18.55■□□□□ 0.56
CCDC3-202ENST00000378839 PLEKHH2Q8IVE3 1493 aa18.54■□□□□ 0.56
CCDC3-202ENST00000378839 DCAF11Q8TEB1 546 aa18.53■□□□□ 0.56
CCDC3-202ENST00000378839 UNC13BO14795 1591 aa18.53■□□□□ 0.56
CCDC3-202ENST00000378839 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.51■□□□□ 0.55
CCDC3-202ENST00000378839 PLCH2O75038 1416 aa18.51■□□□□ 0.55
CCDC3-202ENST00000378839 PLXNC1O60486 1568 aa18.5■□□□□ 0.55
CCDC3-202ENST00000378839 UHRF1BP1LA0JNW5 1464 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms