RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 ARXQ96QS3 562 aa19.52■□□□□ 0.72
NPHP4-201ENST00000378156 LMOD2Q6P5Q4 547 aa19.51■□□□□ 0.71
NPHP4-201ENST00000378156 U2SURPO15042 1029 aaKnown RBP19.5■□□□□ 0.71
NPHP4-201ENST00000378156 SRPK2P78362 688 aaKnown RBP19.5■□□□□ 0.71
NPHP4-201ENST00000378156 BECN1Q14457 450 aa19.5■□□□□ 0.71
NPHP4-201ENST00000378156 CCDC18Q5T9S5 1454 aa19.5■□□□□ 0.71
NPHP4-201ENST00000378156 FTSJ3Q8IY81 847 aaKnown RBP19.49■□□□□ 0.71
NPHP4-201ENST00000378156 LAS1LQ9Y4W2 734 aaKnown RBP19.49■□□□□ 0.71
NPHP4-201ENST00000378156 SAFB2Q14151 953 aaKnown RBP eCLIP19.49■□□□□ 0.71
NPHP4-201ENST00000378156 SYNJ1O43426 1573 aa19.48■□□□□ 0.71
NPHP4-201ENST00000378156 KIF3BO15066 747 aa19.48■□□□□ 0.71
NPHP4-201ENST00000378156 NOP58Q9Y2X3 529 aaKnown RBP19.48■□□□□ 0.71
NPHP4-201ENST00000378156 FGD5Q6ZNL6 1462 aa19.47■□□□□ 0.71
NPHP4-201ENST00000378156 TRIM44Q96DX7 344 aaPredicted RBP19.47■□□□□ 0.71
NPHP4-201ENST00000378156 RGS3P49796 1198 aa19.47■□□□□ 0.71
NPHP4-201ENST00000378156 ERICH6BQ5W0A0 696 aa19.46■□□□□ 0.71
NPHP4-201ENST00000378156 PHLDB1Q86UU1 1377 aa19.46■□□□□ 0.71
NPHP4-201ENST00000378156 SPAG9O60271 1321 aaKnown RBP19.45■□□□□ 0.7
NPHP4-201ENST00000378156 MORC1Q86VD1 984 aa19.44■□□□□ 0.7
NPHP4-201ENST00000378156 STK26Q9P289 416 aa19.44■□□□□ 0.7
NPHP4-201ENST00000378156 ARAP1Q96P48 1450 aa19.43■□□□□ 0.7
NPHP4-201ENST00000378156 FRAT1Q92837 279 aaPredicted RBP19.43■□□□□ 0.7
NPHP4-201ENST00000378156 NCAPD3P42695 1498 aa19.43■□□□□ 0.7
NPHP4-201ENST00000378156 PNNQ9H307 717 aaKnown RBP19.43■□□□□ 0.7
NPHP4-201ENST00000378156 ROCK2O75116 1388 aaKnown RBP19.42■□□□□ 0.7
NPHP4-201ENST00000378156 RAD54L2Q9Y4B4 1467 aa19.42■□□□□ 0.7
NPHP4-201ENST00000378156 KTN1Q86UP2 1357 aaKnown RBP19.4■□□□□ 0.7
NPHP4-201ENST00000378156 PTPRGP23470 1445 aa19.38■□□□□ 0.69
NPHP4-201ENST00000378156 GOLGA6L22H0YM25 854 aa19.38■□□□□ 0.69
NPHP4-201ENST00000378156 GAPVD1Q14C86 1478 aa19.37■□□□□ 0.69
NPHP4-201ENST00000378156 LRRC9Q6ZRR7 1453 aa19.37■□□□□ 0.69
NPHP4-201ENST00000378156 RALBP1Q15311 655 aa19.36■□□□□ 0.69
NPHP4-201ENST00000378156 RCAN3Q9UKA8 241 aa19.36■□□□□ 0.69
NPHP4-201ENST00000378156 MS4A1P11836 297 aa19.35■□□□□ 0.69
NPHP4-201ENST00000378156 PRKRIP1Q9H875 184 aaPredicted RBP19.35■□□□□ 0.69
NPHP4-201ENST00000378156 SOX12O15370 315 aa19.35■□□□□ 0.69
NPHP4-201ENST00000378156 FGD6Q6ZV73 1430 aa19.34■□□□□ 0.69
NPHP4-201ENST00000378156 HDGFL2Q7Z4V5 671 aaPredicted RBP19.34■□□□□ 0.69
NPHP4-201ENST00000378156 WASHC2CQ9Y4E1 1318 aa19.33■□□□□ 0.68
NPHP4-201ENST00000378156 CHMP4BQ9H444 224 aaKnown RBP19.33■□□□□ 0.68
NPHP4-201ENST00000378156 ERICH3Q5RHP9 1530 aa19.32■□□□□ 0.68
NPHP4-201ENST00000378156 RRBP1Q9P2E9 1410 aaKnown RBP19.32■□□□□ 0.68
NPHP4-201ENST00000378156 NCLP19338 710 aaKnown RBP19.31■□□□□ 0.68
NPHP4-201ENST00000378156 PRXQ9BXM0 1461 aa19.31■□□□□ 0.68
NPHP4-201ENST00000378156 ST20-MTHFSA0A0A6YYL1 179 aa19.31■□□□□ 0.68
NPHP4-201ENST00000378156 NLRP13Q86W25 1043 aa19.26■□□□□ 0.67
NPHP4-201ENST00000378156 MYOM3Q5VTT5 1437 aa19.26■□□□□ 0.67
NPHP4-201ENST00000378156 ZNF644Q9H582 1327 aaPredicted RBP19.26■□□□□ 0.67
NPHP4-201ENST00000378156 EIF3AQ14152 1382 aaKnown RBP19.26■□□□□ 0.67
NPHP4-201ENST00000378156 CFTRP13569 1480 aa19.25■□□□□ 0.67
NPHP4-201ENST00000378156 CASC1Q6TDU7 716 aa19.25■□□□□ 0.67
NPHP4-201ENST00000378156 UACAQ9BZF9 1416 aa19.25■□□□□ 0.67
NPHP4-201ENST00000378156 U2AF1L5P0DN76 240 aaPredicted RBP19.24■□□□□ 0.67
NPHP4-201ENST00000378156 U2AF1Q01081 240 aaKnown RBP eCLIP19.24■□□□□ 0.67
NPHP4-201ENST00000378156 OSCARQ8IYS5 282 aa19.23■□□□□ 0.67
NPHP4-201ENST00000378156 CASKIN1Q8WXD9 1431 aa19.22■□□□□ 0.67
NPHP4-201ENST00000378156 TOP2BQ02880 1626 aa19.22■□□□□ 0.67
NPHP4-201ENST00000378156 USP47Q96K76 1375 aa19.22■□□□□ 0.67
NPHP4-201ENST00000378156 CCDC144AA2RUR9 1427 aa19.21■□□□□ 0.67
NPHP4-201ENST00000378156 DEKP35659 375 aaKnown RBP19.21■□□□□ 0.67
NPHP4-201ENST00000378156 NUTM2DQ5VT03 806 aaPredicted RBP19.21■□□□□ 0.67
NPHP4-201ENST00000378156 AQRO60306 1485 aaKnown RBP eCLIP19.2■□□□□ 0.662e-7■■■■■ 54.1
NPHP4-201ENST00000378156 CUX1P39880 1505 aa19.19■□□□□ 0.66
NPHP4-201ENST00000378156 ZBED9Q6R2W3 1325 aa19.19■□□□□ 0.66
NPHP4-201ENST00000378156 CYB5RLQ6IPT4 315 aa19.19■□□□□ 0.66
NPHP4-201ENST00000378156 KIF15Q9NS87 1388 aa19.19■□□□□ 0.66
NPHP4-201ENST00000378156 RTF1Q92541 710 aaKnown RBP19.19■□□□□ 0.66
NPHP4-201ENST00000378156 TERF2IPQ9NYB0 399 aa19.19■□□□□ 0.66
NPHP4-201ENST00000378156 PTMAP06454 111 aaKnown RBP19.18■□□□□ 0.66
NPHP4-201ENST00000378156 NAP1L5Q96NT1 182 aaPredicted RBP19.18■□□□□ 0.66
NPHP4-201ENST00000378156 NCOA2Q15596 1464 aa19.18■□□□□ 0.66
NPHP4-201ENST00000378156 TCERG1O14776 1098 aaKnown RBP19.18■□□□□ 0.66
NPHP4-201ENST00000378156 MYBBP1AQ9BQG0 1328 aaKnown RBP19.17■□□□□ 0.66
NPHP4-201ENST00000378156 RTN4Q9NQC3 1192 aaKnown RBP19.17■□□□□ 0.66
NPHP4-201ENST00000378156 PAK3O75914 559 aaPredicted RBP19.16■□□□□ 0.66
NPHP4-201ENST00000378156 TRAK1Q9UPV9 953 aa19.16■□□□□ 0.66
NPHP4-201ENST00000378156 EID1Q9Y6B2 187 aa19.16■□□□□ 0.66
NPHP4-201ENST00000378156 PANK3Q9H999 370 aa19.15■□□□□ 0.66
NPHP4-201ENST00000378156 WASHC2AQ641Q2 1341 aa19.15■□□□□ 0.66
NPHP4-201ENST00000378156 OS9Q13438 667 aaPredicted RBP19.15■□□□□ 0.66
NPHP4-201ENST00000378156 CCDC7Q96M83 1385 aa19.14■□□□□ 0.66
NPHP4-201ENST00000378156 KIF7Q2M1P5 1343 aa19.14■□□□□ 0.66
NPHP4-201ENST00000378156 CCDC146Q8IYE0 955 aa19.14■□□□□ 0.65
NPHP4-201ENST00000378156 PDE3BQ13370 1112 aa19.14■□□□□ 0.65
NPHP4-201ENST00000378156 DNTTIP2Q5QJE6 756 aaKnown RBP19.13■□□□□ 0.65
NPHP4-201ENST00000378156 GOLGA2Q08379 1002 aa19.12■□□□□ 0.65
NPHP4-201ENST00000378156 IPO8O15397 1037 aaKnown RBP19.12■□□□□ 0.65
NPHP4-201ENST00000378156 CALD1Q05682 793 aaKnown RBP19.12■□□□□ 0.65
NPHP4-201ENST00000378156 FYCO1Q9BQS8 1478 aa19.11■□□□□ 0.65
NPHP4-201ENST00000378156 IPO9Q96P70 1041 aaKnown RBP19.1■□□□□ 0.65
NPHP4-201ENST00000378156 VGFO15240 615 aaPredicted RBP19.09■□□□□ 0.65
NPHP4-201ENST00000378156 CDK11BP21127 795 aaKnown RBP19.09■□□□□ 0.65
NPHP4-201ENST00000378156 PLIN1O60240 522 aa19.08■□□□□ 0.64
NPHP4-201ENST00000378156 EXOC6Q8TAG9 804 aa19.07■□□□□ 0.64
NPHP4-201ENST00000378156 GRIN2BQ13224 1484 aa19.07■□□□□ 0.64
NPHP4-201ENST00000378156 CNTLNQ9NXG0 1405 aa19.06■□□□□ 0.64
NPHP4-201ENST00000378156 NESP48681 1621 aa19.06■□□□□ 0.64
NPHP4-201ENST00000378156 TIAM1Q13009 1591 aa19.06■□□□□ 0.64
NPHP4-201ENST00000378156 NGDNQ8NEJ9 315 aaKnown RBP19.06■□□□□ 0.64
NPHP4-201ENST00000378156 L1TD1Q5T7N2 865 aaKnown RBP19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms