RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 NOP58Q9Y2X3 529 aaKnown RBP6.31□□□□□ -1.4
PCDH9-201ENST00000377861 MAP7D2Q96T17 732 aa6.31□□□□□ -1.4
PCDH9-201ENST00000377861 PDE3AQ14432 1141 aa6.3□□□□□ -1.4
PCDH9-201ENST00000377861 HFM1A2PYH4 1435 aa6.3□□□□□ -1.4
PCDH9-201ENST00000377861 RAPGEF2Q9Y4G8 1499 aa6.3□□□□□ -1.4
PCDH9-201ENST00000377861 E9PSI1 815 aa6.3□□□□□ -1.4
PCDH9-201ENST00000377861 ATP6V1DQ9Y5K8 247 aa6.29□□□□□ -1.4
PCDH9-201ENST00000377861 RRBP1Q9P2E9 1410 aaKnown RBP6.29□□□□□ -1.4
PCDH9-201ENST00000377861 PHF14O94880 888 aa6.29□□□□□ -1.4
PCDH9-201ENST00000377861 CSPP1Q1MSJ5 1256 aa6.29□□□□□ -1.4
PCDH9-201ENST00000377861 TOP2AP11388 1531 aaKnown RBP6.29□□□□□ -1.4
PCDH9-201ENST00000377861 KIF16BQ96L93 1317 aa6.29□□□□□ -1.4
PCDH9-201ENST00000377861 UACAQ9BZF9 1416 aa6.29□□□□□ -1.4
PCDH9-201ENST00000377861 ROCK1Q13464 1354 aa6.29□□□□□ -1.4
PCDH9-201ENST00000377861 RCAN3Q9UKA8 241 aa6.29□□□□□ -1.4
PCDH9-201ENST00000377861 HTATSF1O43719 755 aaKnown RBP6.29□□□□□ -1.4
PCDH9-201ENST00000377861 GBP4Q96PP9 640 aa6.29□□□□□ -1.4
PCDH9-201ENST00000377861 EIF3AQ14152 1382 aaKnown RBP6.29□□□□□ -1.4
PCDH9-201ENST00000377861 KANK1Q14678 1352 aa6.28□□□□□ -1.4
PCDH9-201ENST00000377861 LMOD3Q0VAK6 560 aa6.28□□□□□ -1.4
PCDH9-201ENST00000377861 PRKRIP1Q9H875 184 aaPredicted RBP6.28□□□□□ -1.4
PCDH9-201ENST00000377861 SCAPERQ9BY12 1400 aa6.28□□□□□ -1.4
PCDH9-201ENST00000377861 NINLQ9Y2I6 1382 aa6.27□□□□□ -1.41
PCDH9-201ENST00000377861 MCM2P49736 904 aa6.27□□□□□ -1.41
PCDH9-201ENST00000377861 GOLGA2Q08379 1002 aa6.27□□□□□ -1.41
PCDH9-201ENST00000377861 CCDC34Q96HJ3 373 aa6.27□□□□□ -1.41
PCDH9-201ENST00000377861 SYAP1Q96A49 352 aaPredicted RBP6.27□□□□□ -1.41
PCDH9-201ENST00000377861 DDX11L8A8MPP1 907 aa6.27□□□□□ -1.41
PCDH9-201ENST00000377861 CNTLNQ9NXG0 1405 aa6.26□□□□□ -1.41
PCDH9-201ENST00000377861 TERF2IPQ9NYB0 399 aa6.26□□□□□ -1.41
PCDH9-201ENST00000377861 ARHGAP35Q9NRY4 1499 aa6.26□□□□□ -1.41
PCDH9-201ENST00000377861 ERICH3Q5RHP9 1530 aa6.26□□□□□ -1.41
PCDH9-201ENST00000377861 MYOM3Q5VTT5 1437 aa6.26□□□□□ -1.41
PCDH9-201ENST00000377861 RPGRIP1LQ68CZ1 1315 aa6.25□□□□□ -1.41
PCDH9-201ENST00000377861 TPM3P06753 285 aa6.25□□□□□ -1.41
PCDH9-201ENST00000377861 AQRO60306 1485 aaKnown RBP eCLIP6.25□□□□□ -1.41
PCDH9-201ENST00000377861 VGFO15240 615 aaPredicted RBP6.25□□□□□ -1.41
PCDH9-201ENST00000377861 BRD4O60885 1362 aaPredicted RBP6.25□□□□□ -1.41
PCDH9-201ENST00000377861 KIF15Q9NS87 1388 aa6.25□□□□□ -1.41
PCDH9-201ENST00000377861 FAM9BQ8IZU0 186 aa6.25□□□□□ -1.41
PCDH9-201ENST00000377861 ATAD2BQ9ULI0 1458 aa6.25□□□□□ -1.41
PCDH9-201ENST00000377861 RAB3GAP2Q9H2M9 1393 aa6.25□□□□□ -1.41
PCDH9-201ENST00000377861 LETM1O95202 739 aaPredicted RBP6.24□□□□□ -1.41
PCDH9-201ENST00000377861 CWC22Q9HCG8 908 aaKnown RBP6.24□□□□□ -1.41
PCDH9-201ENST00000377861 GOLGA6L6A8MZA4 724 aa6.24□□□□□ -1.41
PCDH9-201ENST00000377861 DHX57Q6P158 1386 aaKnown RBP6.24□□□□□ -1.41
PCDH9-201ENST00000377861 CIZ1Q9ULV3 898 aaPredicted RBP6.24□□□□□ -1.41
PCDH9-201ENST00000377861 MYBBP1AQ9BQG0 1328 aaKnown RBP6.24□□□□□ -1.41
PCDH9-201ENST00000377861 ESF1Q9H501 851 aaKnown RBP6.24□□□□□ -1.41
PCDH9-201ENST00000377861 TUBB4BP68371 445 aa6.24□□□□□ -1.41
PCDH9-201ENST00000377861 KIF3AQ9Y496 699 aa6.24□□□□□ -1.41
PCDH9-201ENST00000377861 PRXQ9BXM0 1461 aa6.23□□□□□ -1.41
PCDH9-201ENST00000377861 ZMYM3Q14202 1370 aa6.23□□□□□ -1.41
PCDH9-201ENST00000377861 TICAM2Q86XR7 235 aa6.23□□□□□ -1.41
PCDH9-201ENST00000377861 LAS1LQ9Y4W2 734 aaKnown RBP6.23□□□□□ -1.41
PCDH9-201ENST00000377861 MCCP23508 829 aa6.23□□□□□ -1.41
PCDH9-201ENST00000377861 SOGA1O94964 1423 aa6.23□□□□□ -1.41
PCDH9-201ENST00000377861 CAVIN2O95810 425 aa6.22□□□□□ -1.41
PCDH9-201ENST00000377861 CHAF1AQ13111 956 aaPredicted RBP6.22□□□□□ -1.41
PCDH9-201ENST00000377861 CAVIN1Q6NZI2 390 aaKnown RBP6.22□□□□□ -1.41
PCDH9-201ENST00000377861 CCDC7Q96M83 1385 aa6.22□□□□□ -1.41
PCDH9-201ENST00000377861 WDR63Q8IWG1 891 aa6.22□□□□□ -1.41
PCDH9-201ENST00000377861 CASKIN1Q8WXD9 1431 aa6.22□□□□□ -1.41
PCDH9-201ENST00000377861 HMMRO75330 724 aa6.22□□□□□ -1.41
PCDH9-201ENST00000377861 CFTRP13569 1480 aa6.22□□□□□ -1.41
PCDH9-201ENST00000377861 MCM5P33992 734 aa6.22□□□□□ -1.41
PCDH9-201ENST00000377861 L3MBTL2Q969R5 705 aa6.22□□□□□ -1.41
PCDH9-201ENST00000377861 GOLGA6L3A6NEY3 463 aa6.21□□□□□ -1.41
PCDH9-201ENST00000377861 NUCB2P80303 420 aa6.21□□□□□ -1.41
PCDH9-201ENST00000377861 HMGN5P82970 282 aaKnown RBP6.21□□□□□ -1.42
PCDH9-201ENST00000377861 LRRFIP1Q32MZ4 808 aaKnown RBP6.21□□□□□ -1.42
PCDH9-201ENST00000377861 EPB41L2O43491 1005 aaKnown RBP6.21□□□□□ -1.42
PCDH9-201ENST00000377861 MROH2BQ7Z745 1585 aa6.21□□□□□ -1.42
PCDH9-201ENST00000377861 TUBB4AP04350 444 aa6.2□□□□□ -1.42
PCDH9-201ENST00000377861 DHX29Q7Z478 1369 aaKnown RBP6.2□□□□□ -1.42
PCDH9-201ENST00000377861 CUX2O14529 1486 aa6.2□□□□□ -1.42
PCDH9-201ENST00000377861 GSE1Q14687 1217 aa6.2□□□□□ -1.42
PCDH9-201ENST00000377861 JPH4Q96JJ6 628 aa6.2□□□□□ -1.42
PCDH9-201ENST00000377861 FAM161AQ3B820 660 aa6.19□□□□□ -1.42
PCDH9-201ENST00000377861 HSPA5P11021 654 aaKnown RBP6.19□□□□□ -1.42
PCDH9-201ENST00000377861 CECR2Q9BXF3 1484 aa6.19□□□□□ -1.42
PCDH9-201ENST00000377861 FTSJ3Q8IY81 847 aaKnown RBP6.19□□□□□ -1.42
PCDH9-201ENST00000377861 TAF3Q5VWG9 929 aa6.19□□□□□ -1.42
PCDH9-201ENST00000377861 POLR3GLQ9BT43 218 aa6.19□□□□□ -1.42
PCDH9-201ENST00000377861 SLC52A1Q9NWF4 448 aa6.19□□□□□ -1.42
PCDH9-201ENST00000377861 HSP90AB4PQ58FF6 505 aa6.18□□□□□ -1.42
PCDH9-201ENST00000377861 TSHZ2Q9NRE2 1034 aa6.18□□□□□ -1.42
PCDH9-201ENST00000377861 PKD2Q13563 968 aa6.18□□□□□ -1.42
PCDH9-201ENST00000377861 PDCL2Q8N4E4 241 aa6.18□□□□□ -1.42
PCDH9-201ENST00000377861 FAM184AQ8NB25 1140 aa6.18□□□□□ -1.42
PCDH9-201ENST00000377861 KANK4Q5T7N3 995 aaPredicted RBP6.18□□□□□ -1.42
PCDH9-201ENST00000377861 SOS1Q07889 1333 aaPredicted RBP6.18□□□□□ -1.42
PCDH9-201ENST00000377861 REC8O95072 547 aa6.18□□□□□ -1.42
PCDH9-201ENST00000377861 PNISRQ8TF01 805 aaKnown RBP6.18□□□□□ -1.42
PCDH9-201ENST00000377861 TERF1P54274 439 aa6.18□□□□□ -1.42
PCDH9-201ENST00000377861 HS1BP3Q53T59 392 aa6.18□□□□□ -1.42
PCDH9-201ENST00000377861 ST18O60284 1047 aa6.17□□□□□ -1.42
PCDH9-201ENST00000377861 ZNF692Q9BU19 519 aaPredicted RBP6.17□□□□□ -1.42
PCDH9-201ENST00000377861 KIAA2012Q0VF49 1180 aa6.17□□□□□ -1.42
PCDH9-201ENST00000377861 PLEKHH2Q8IVE3 1493 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms