RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 CALD1Q05682 793 aaKnown RBP14.56□□□□□ -0.08
VPS13A-205ENST00000376636 HSP90B1P14625 803 aaKnown RBP14.55□□□□□ -0.08
VPS13A-205ENST00000376636 CARD11Q9BXL7 1154 aa14.55□□□□□ -0.08
VPS13A-205ENST00000376636 TPM1P09493 284 aa14.54□□□□□ -0.08
VPS13A-205ENST00000376636 HMMRO75330 724 aa14.54□□□□□ -0.08
VPS13A-205ENST00000376636 ZNF771Q7L3S4 317 aaPredicted RBP14.54□□□□□ -0.08
VPS13A-205ENST00000376636 PABPN1Q86U42 306 aaKnown RBP eCLIP14.54□□□□□ -0.082e-6■□□□□ 9.6
VPS13A-205ENST00000376636 PDE4CQ08493 712 aa14.53□□□□□ -0.08
VPS13A-205ENST00000376636 TPM2P07951 284 aa14.53□□□□□ -0.08
VPS13A-205ENST00000376636 B4GALNT3Q6L9W6 998 aa14.53□□□□□ -0.08
VPS13A-205ENST00000376636 CHMP4AQ9BY43 222 aa14.52□□□□□ -0.08
VPS13A-205ENST00000376636 TMX4Q9H1E5 349 aaPredicted RBP14.52□□□□□ -0.09
VPS13A-205ENST00000376636 PATL2C9JE40 543 aaKnown RBP14.52□□□□□ -0.09
VPS13A-205ENST00000376636 DDX11L8A8MPP1 907 aa14.51□□□□□ -0.09
VPS13A-205ENST00000376636 TCERG1O14776 1098 aaKnown RBP14.51□□□□□ -0.09
VPS13A-205ENST00000376636 U2SURPO15042 1029 aaKnown RBP14.51□□□□□ -0.09
VPS13A-205ENST00000376636 POGKQ9P215 609 aa14.5□□□□□ -0.09
VPS13A-205ENST00000376636 RTF1Q92541 710 aaKnown RBP14.49□□□□□ -0.09
VPS13A-205ENST00000376636 CREBRFQ8IUR6 639 aa14.49□□□□□ -0.09
VPS13A-205ENST00000376636 HDAC5Q9UQL6 1122 aa14.48□□□□□ -0.09
VPS13A-205ENST00000376636 CDR1P51861 262 aa14.48□□□□□ -0.09
VPS13A-205ENST00000376636 CLIP1P30622 1438 aa14.48□□□□□ -0.09
VPS13A-205ENST00000376636 TPD52L1Q16890 204 aaPredicted RBP14.48□□□□□ -0.09
VPS13A-205ENST00000376636 GOLGA6L19H0YKK7 550 aa14.48□□□□□ -0.09
VPS13A-205ENST00000376636 CHMP4CQ96CF2 233 aa14.48□□□□□ -0.09
VPS13A-205ENST00000376636 ABCC9O60706 1549 aa14.48□□□□□ -0.09
VPS13A-205ENST00000376636 RWDD1Q9H446 243 aaPredicted RBP14.47□□□□□ -0.09
VPS13A-205ENST00000376636 SLKQ9H2G2 1235 aaPredicted RBP14.47□□□□□ -0.09
VPS13A-205ENST00000376636 KIF16BQ96L93 1317 aa14.47□□□□□ -0.09
VPS13A-205ENST00000376636 RBM19Q9Y4C8 960 aaKnown RBP14.47□□□□□ -0.09
VPS13A-205ENST00000376636 ATP6V1DQ9Y5K8 247 aa14.47□□□□□ -0.09
VPS13A-205ENST00000376636 ST18O60284 1047 aa14.47□□□□□ -0.09
VPS13A-205ENST00000376636 LMOD2Q6P5Q4 547 aa14.47□□□□□ -0.09
VPS13A-205ENST00000376636 IPO7O95373 1038 aaKnown RBP14.46□□□□□ -0.09
VPS13A-205ENST00000376636 PES1O00541 588 aaKnown RBP14.45□□□□□ -0.1
VPS13A-205ENST00000376636 CCAR2Q8N163 923 aaKnown RBP14.45□□□□□ -0.1
VPS13A-205ENST00000376636 KRI1Q8N9T8 703 aaKnown RBP14.45□□□□□ -0.1
VPS13A-205ENST00000376636 RGL3Q3MIN7 710 aa14.45□□□□□ -0.1
VPS13A-205ENST00000376636 RRP7BPQ9NSQ0 103 aa14.45□□□□□ -0.1
VPS13A-205ENST00000376636 APPP05067 770 aa14.45□□□□□ -0.1
VPS13A-205ENST00000376636 AK7Q96M32 723 aa14.45□□□□□ -0.1
VPS13A-205ENST00000376636 PMFBP1Q8TBY8 1022 aa14.44□□□□□ -0.1
VPS13A-205ENST00000376636 CC2D1BQ5T0F9 858 aaKnown RBP14.43□□□□□ -0.1
VPS13A-205ENST00000376636 CCDC191Q8NCU4 936 aa14.43□□□□□ -0.1
VPS13A-205ENST00000376636 RUFY1Q96T51 708 aa14.43□□□□□ -0.1
VPS13A-205ENST00000376636 MAP7D2Q96T17 732 aa14.43□□□□□ -0.1
VPS13A-205ENST00000376636 SKOR2Q2VWA4 1001 aaPredicted RBP14.43□□□□□ -0.1
VPS13A-205ENST00000376636 ACBD3Q9H3P7 528 aa14.43□□□□□ -0.1
VPS13A-205ENST00000376636 SCRIBQ14160 1630 aa14.43□□□□□ -0.1
VPS13A-205ENST00000376636 DCTN1Q14203 1278 aa14.42□□□□□ -0.1
VPS13A-205ENST00000376636 GORABQ5T7V8 394 aa14.42□□□□□ -0.1
VPS13A-205ENST00000376636 VSIG10Q8N0Z9 540 aa14.42□□□□□ -0.1
VPS13A-205ENST00000376636 TMF1P82094 1093 aa14.42□□□□□ -0.1
VPS13A-205ENST00000376636 CWC15Q9P013 229 aaKnown RBP14.42□□□□□ -0.1
VPS13A-205ENST00000376636 SF3A1Q15459 793 aaKnown RBP14.4□□□□□ -0.1
VPS13A-205ENST00000376636 SENP3Q9H4L4 574 aaPredicted RBP14.4□□□□□ -0.1
VPS13A-205ENST00000376636 ZCCHC6Q5VYS8 1495 aaKnown RBP14.4□□□□□ -0.1
VPS13A-205ENST00000376636 ANKRD20A12PQ8NF67 263 aa14.4□□□□□ -0.1
VPS13A-205ENST00000376636 IPO9Q96P70 1041 aaKnown RBP14.4□□□□□ -0.1
VPS13A-205ENST00000376636 TRIM6-TRIM34B2RNG4 842 aa14.4□□□□□ -0.1
VPS13A-205ENST00000376636 ITPRIPQ8IWB1 547 aa14.39□□□□□ -0.11
VPS13A-205ENST00000376636 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.39□□□□□ -0.11
VPS13A-205ENST00000376636 BECN2A8MW95 431 aa14.39□□□□□ -0.11
VPS13A-205ENST00000376636 ARGLU1Q9NWB6 273 aaPredicted RBP14.39□□□□□ -0.11
VPS13A-205ENST00000376636 KTN1Q86UP2 1357 aaKnown RBP14.38□□□□□ -0.11
VPS13A-205ENST00000376636 VPS53Q5VIR6 699 aa14.38□□□□□ -0.11
VPS13A-205ENST00000376636 SPAG9O60271 1321 aaKnown RBP14.38□□□□□ -0.11
VPS13A-205ENST00000376636 RDXP35241 583 aaKnown RBP14.38□□□□□ -0.11
VPS13A-205ENST00000376636 MARCH6O60337 910 aa14.38□□□□□ -0.11
VPS13A-205ENST00000376636 HOOK1Q9UJC3 728 aaKnown RBP14.38□□□□□ -0.11
VPS13A-205ENST00000376636 H3BQV1 296 aa14.37□□□□□ -0.11
VPS13A-205ENST00000376636 IFFO2Q5TF58 517 aa14.37□□□□□ -0.11
VPS13A-205ENST00000376636 MTERF4Q7Z6M4 381 aaKnown RBP14.37□□□□□ -0.11
VPS13A-205ENST00000376636 KANK1Q14678 1352 aa14.37□□□□□ -0.11
VPS13A-205ENST00000376636 SENP3-EIF4A1A0A087X0R7 540 aa14.37□□□□□ -0.11
VPS13A-205ENST00000376636 HSP90B2PQ58FF3 399 aa14.37□□□□□ -0.11
VPS13A-205ENST00000376636 GOLGA3Q08378 1498 aa14.37□□□□□ -0.11
VPS13A-205ENST00000376636 APBB1O00213 710 aa14.36□□□□□ -0.11
VPS13A-205ENST00000376636 TCEAL9Q9UHQ7 104 aa14.36□□□□□ -0.11
VPS13A-205ENST00000376636 HDGFP51858 240 aaKnown RBP14.35□□□□□ -0.11
VPS13A-205ENST00000376636 MFAP1P55081 439 aaKnown RBP14.35□□□□□ -0.11
VPS13A-205ENST00000376636 CHMP7Q8WUX9 453 aaPredicted RBP14.35□□□□□ -0.11
VPS13A-205ENST00000376636 CCER2I3L3R5 266 aa14.34□□□□□ -0.11
VPS13A-205ENST00000376636 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.34□□□□□ -0.11
VPS13A-205ENST00000376636 PLEKHD1A6NEE1 506 aa14.34□□□□□ -0.11
VPS13A-205ENST00000376636 TAF7LQ5H9L4 462 aa14.34□□□□□ -0.11
VPS13A-205ENST00000376636 MYO6Q9UM54 1294 aa14.34□□□□□ -0.11
VPS13A-205ENST00000376636 MORC1Q86VD1 984 aa14.33□□□□□ -0.12
VPS13A-205ENST00000376636 FBXO3Q9UK99 471 aa14.33□□□□□ -0.12
VPS13A-205ENST00000376636 H0YHG0 523 aa14.32□□□□□ -0.12
VPS13A-205ENST00000376636 STK31Q9BXU1 1019 aa14.32□□□□□ -0.12
VPS13A-205ENST00000376636 RCAN3Q9UKA8 241 aa14.32□□□□□ -0.12
VPS13A-205ENST00000376636 EEA1Q15075 1411 aa14.32□□□□□ -0.12
VPS13A-205ENST00000376636 CCDC66A2RUB6 948 aa14.32□□□□□ -0.12
VPS13A-205ENST00000376636 ZNF592Q92610 1267 aa14.31□□□□□ -0.12
VPS13A-205ENST00000376636 ZRSR2Q15696 482 aaKnown RBP14.31□□□□□ -0.12
VPS13A-205ENST00000376636 HOMER1Q86YM7 354 aa14.31□□□□□ -0.12
VPS13A-205ENST00000376636 AKAP17AQ02040 695 aaKnown RBP14.31□□□□□ -0.12
VPS13A-205ENST00000376636 CHMP3Q9Y3E7 222 aa14.3□□□□□ -0.12
VPS13A-205ENST00000376636 G3V3G9 751 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms