RNA–Protein interactions for RNA: ENST00000375224.1

UBR4-202, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 3,475 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-202ENST00000375224 SIN3AQ96ST3 1273 aa11.77□□□□□ -0.52
UBR4-202ENST00000375224 PTPRGP23470 1445 aa11.77□□□□□ -0.53
UBR4-202ENST00000375224 RRP7BPQ9NSQ0 103 aa11.77□□□□□ -0.53
UBR4-202ENST00000375224 CHIC2Q9UKJ5 165 aa11.77□□□□□ -0.53
UBR4-202ENST00000375224 CFDP1Q9UEE9 299 aaPredicted RBP11.76□□□□□ -0.53
UBR4-202ENST00000375224 SHROOM2Q13796 1616 aa11.75□□□□□ -0.53
UBR4-202ENST00000375224 KIF14Q15058 1648 aa11.75□□□□□ -0.53
UBR4-202ENST00000375224 ATP10BO94823 1461 aa11.75□□□□□ -0.53
UBR4-202ENST00000375224 ABCC5O15440 1437 aa11.75□□□□□ -0.53
UBR4-202ENST00000375224 GPATCH8Q9UKJ3 1502 aaKnown RBP11.75□□□□□ -0.53
UBR4-202ENST00000375224 TONSLQ96HA7 1378 aa11.74□□□□□ -0.53
UBR4-202ENST00000375224 CAMSAP2Q08AD1 1489 aa11.73□□□□□ -0.53
UBR4-202ENST00000375224 PPP1R15AO75807 674 aaPredicted RBP11.73□□□□□ -0.53
UBR4-202ENST00000375224 TRIM52Q96A61 297 aa11.73□□□□□ -0.53
UBR4-202ENST00000375224 MIER1Q8N108 512 aa11.72□□□□□ -0.53
UBR4-202ENST00000375224 ADGBQ8N7X0 1667 aa11.71□□□□□ -0.53
UBR4-202ENST00000375224 ANP32EQ9BTT0 268 aa11.7□□□□□ -0.54
UBR4-202ENST00000375224 ABCC10Q5T3U5 1492 aa11.7□□□□□ -0.54
UBR4-202ENST00000375224 ZNF644Q9H582 1327 aaPredicted RBP11.7□□□□□ -0.54
UBR4-202ENST00000375224 CDC42BPAQ5VT25 1732 aa11.69□□□□□ -0.54
UBR4-202ENST00000375224 ADGRL2O95490 1459 aa11.69□□□□□ -0.54
UBR4-202ENST00000375224 MPHOSPH9Q99550 1183 aa11.69□□□□□ -0.54
UBR4-202ENST00000375224 CROCC2H7BZ55 1655 aa11.69□□□□□ -0.54
UBR4-202ENST00000375224 KDM6BO15054 1643 aa11.68□□□□□ -0.54
UBR4-202ENST00000375224 ZNF777Q9ULD5 760 aaPredicted RBP11.67□□□□□ -0.54
UBR4-202ENST00000375224 ANKRD30AQ9BXX3 1397 aa11.67□□□□□ -0.54
UBR4-202ENST00000375224 NCOA1Q15788 1441 aa11.67□□□□□ -0.54
UBR4-202ENST00000375224 SHANK2Q9UPX8 1470 aa11.67□□□□□ -0.54
UBR4-202ENST00000375224 ABCC2Q92887 1545 aa11.65□□□□□ -0.54
UBR4-202ENST00000375224 CLASP1Q7Z460 1538 aa11.65□□□□□ -0.54
UBR4-202ENST00000375224 RSPH4AQ5TD94 716 aa11.64□□□□□ -0.55
UBR4-202ENST00000375224 DENND4BO75064 1496 aaPredicted RBP11.64□□□□□ -0.55
UBR4-202ENST00000375224 ARHGEF5Q12774 1597 aa11.64□□□□□ -0.55
UBR4-202ENST00000375224 TSPY4P0CV99 314 aa11.63□□□□□ -0.55
UBR4-202ENST00000375224 TSPY10P0CW01 314 aa11.63□□□□□ -0.55
UBR4-202ENST00000375224 PREX2Q70Z35 1606 aa11.62□□□□□ -0.55
UBR4-202ENST00000375224 SLC4A1APQ9BWU0 796 aaKnown RBP11.62□□□□□ -0.55
UBR4-202ENST00000375224 UHRF1BP1LA0JNW5 1464 aa11.61□□□□□ -0.55
UBR4-202ENST00000375224 C9orf84Q5VXU9 1444 aa11.61□□□□□ -0.55
UBR4-202ENST00000375224 ANKRD30BQ9BXX2 1392 aa11.61□□□□□ -0.55
UBR4-202ENST00000375224 ERCC6L2Q5T890 1561 aa11.6□□□□□ -0.55
UBR4-202ENST00000375224 ANKRD50Q9ULJ7 1429 aa11.6□□□□□ -0.55
UBR4-202ENST00000375224 CDC42BPBQ9Y5S2 1711 aa11.59□□□□□ -0.55
UBR4-202ENST00000375224 KDM5BQ9UGL1 1544 aa11.59□□□□□ -0.55
UBR4-202ENST00000375224 RPRD2Q5VT52 1461 aaKnown RBP11.59□□□□□ -0.55
UBR4-202ENST00000375224 CCDC141Q6ZP82 1450 aa11.58□□□□□ -0.56
UBR4-202ENST00000375224 PLEKHH2Q8IVE3 1493 aa11.58□□□□□ -0.56
UBR4-202ENST00000375224 PZPP20742 1482 aa11.58□□□□□ -0.56
UBR4-202ENST00000375224 YTHDC1Q96MU7 727 aaKnown RBP11.58□□□□□ -0.56
UBR4-202ENST00000375224 MBD5Q9P267 1494 aa11.57□□□□□ -0.56
UBR4-202ENST00000375224 MYO5CQ9NQX4 1742 aa11.57□□□□□ -0.56
UBR4-202ENST00000375224 SAMD9LQ8IVG5 1584 aa11.57□□□□□ -0.56
UBR4-202ENST00000375224 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.56□□□□□ -0.56
UBR4-202ENST00000375224 KIAA1107Q9UPP5 1409 aa11.56□□□□□ -0.56
UBR4-202ENST00000375224 ARHGAP5Q13017 1502 aa11.56□□□□□ -0.56
UBR4-202ENST00000375224 HNRNPMP52272 730 aaKnown RBP eCLIP11.55□□□□□ -0.56
UBR4-202ENST00000375224 ZCCHC11Q5TAX3 1644 aaKnown RBP11.55□□□□□ -0.56
UBR4-202ENST00000375224 TTC37Q6PGP7 1564 aa11.55□□□□□ -0.56
UBR4-202ENST00000375224 DDX10Q13206 875 aaKnown RBP11.55□□□□□ -0.56
UBR4-202ENST00000375224 KDM5DQ9BY66 1539 aa11.55□□□□□ -0.56
UBR4-202ENST00000375224 MAST1Q9Y2H9 1570 aa11.55□□□□□ -0.56
UBR4-202ENST00000375224 KIF15Q9NS87 1388 aa11.54□□□□□ -0.56
UBR4-202ENST00000375224 L3MBTL2Q969R5 705 aa11.54□□□□□ -0.56
UBR4-202ENST00000375224 FOXD1Q16676 465 aa11.54□□□□□ -0.56
UBR4-202ENST00000375224 NUP155O75694 1391 aa11.52□□□□□ -0.56
UBR4-202ENST00000375224 EIF4G2P78344 907 aaKnown RBP eCLIP11.52□□□□□ -0.57
UBR4-202ENST00000375224 PKD2Q13563 968 aa11.52□□□□□ -0.57
UBR4-202ENST00000375224 PLCH2O75038 1416 aa11.52□□□□□ -0.57
UBR4-202ENST00000375224 TEX14Q8IWB6 1497 aa11.52□□□□□ -0.57
UBR4-202ENST00000375224 SYCP2Q9BX26 1530 aa11.51□□□□□ -0.57
UBR4-202ENST00000375224 EFCAB2Q5VUJ9 269 aa11.51□□□□□ -0.57
UBR4-202ENST00000375224 KCNH8Q96L42 1107 aa11.5□□□□□ -0.57
UBR4-202ENST00000375224 PLXNC1O60486 1568 aa11.49□□□□□ -0.57
UBR4-202ENST00000375224 ANP32CO43423 234 aa11.49□□□□□ -0.57
UBR4-202ENST00000375224 HIRIP3Q9BW71 556 aaPredicted RBP11.49□□□□□ -0.57
UBR4-202ENST00000375224 ARAP3Q8WWN8 1544 aa11.49□□□□□ -0.57
UBR4-202ENST00000375224 HSPA5P11021 654 aaKnown RBP11.48□□□□□ -0.57
UBR4-202ENST00000375224 CCER2I3L3R5 266 aa11.47□□□□□ -0.57
UBR4-202ENST00000375224 EIF5BO60841 1220 aaKnown RBP11.47□□□□□ -0.57
UBR4-202ENST00000375224 DUOX2Q9NRD8 1548 aa11.46□□□□□ -0.58
UBR4-202ENST00000375224 UNC13BO14795 1591 aa11.45□□□□□ -0.58
UBR4-202ENST00000375224 WDR7Q9Y4E6 1490 aa11.45□□□□□ -0.58
UBR4-202ENST00000375224 ABCC1P33527 1531 aa11.45□□□□□ -0.58
UBR4-202ENST00000375224 ARHGEF12Q9NZN5 1544 aa11.44□□□□□ -0.58
UBR4-202ENST00000375224 FAM135AQ9P2D6 1515 aa11.44□□□□□ -0.58
UBR4-202ENST00000375224 NBPF8Q3BBV2 869 aa11.44□□□□□ -0.58
UBR4-202ENST00000375224 ERBINQ96RT1 1412 aa11.44□□□□□ -0.58
UBR4-202ENST00000375224 OSCARQ8IYS5 282 aa11.44□□□□□ -0.58
UBR4-202ENST00000375224 RTEL1-TNFRSF6BF6WH68 1400 aa11.42□□□□□ -0.58
UBR4-202ENST00000375224 UHRF1BP1Q6BDS2 1440 aa11.42□□□□□ -0.58
UBR4-202ENST00000375224 IQGAP3Q86VI3 1631 aa11.41□□□□□ -0.58
UBR4-202ENST00000375224 WASHC2AQ641Q2 1341 aa11.41□□□□□ -0.58
UBR4-202ENST00000375224 ABCA9Q8IUA7 1624 aa11.41□□□□□ -0.58
UBR4-202ENST00000375224 SPATA31E1Q6ZUB1 1445 aa11.4□□□□□ -0.58
UBR4-202ENST00000375224 POLR1AO95602 1720 aaPredicted RBP11.4□□□□□ -0.58
UBR4-202ENST00000375224 NPM1P06748 294 aaKnown RBP eCLIP11.39□□□□□ -0.59
UBR4-202ENST00000375224 CCDC7Q96M83 1385 aa11.39□□□□□ -0.59
UBR4-202ENST00000375224 SPAG9O60271 1321 aaKnown RBP11.39□□□□□ -0.59
UBR4-202ENST00000375224 MAGI2Q86UL8 1455 aa11.39□□□□□ -0.59
UBR4-202ENST00000375224 CCDC144AA2RUR9 1427 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms