RNA–Protein interactions for RNA: ENST00000375218.3

UBR4-201, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 4,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-201ENST00000375218 FOXD4L1Q9NU39 408 aa12.75□□□□□ -0.37
UBR4-201ENST00000375218 CLSTN1O94985 981 aa12.74□□□□□ -0.37
UBR4-201ENST00000375218 FAM177A1Q8N128 213 aaPredicted RBP12.74□□□□□ -0.37
UBR4-201ENST00000375218 CNPY4Q8N129 248 aa12.74□□□□□ -0.37
UBR4-201ENST00000375218 DEKP35659 375 aaKnown RBP12.73□□□□□ -0.37
UBR4-201ENST00000375218 CTTNBP2Q8WZ74 1663 aa12.73□□□□□ -0.37
UBR4-201ENST00000375218 NEUROD2Q15784 382 aa12.73□□□□□ -0.37
UBR4-201ENST00000375218 CEP164Q9UPV0 1460 aa12.72□□□□□ -0.37
UBR4-201ENST00000375218 TNIKQ9UKE5 1360 aa12.71□□□□□ -0.37
UBR4-201ENST00000375218 ZMYND15Q9H091 742 aa12.71□□□□□ -0.37
UBR4-201ENST00000375218 EIF4G3O43432 1585 aaKnown RBP12.71□□□□□ -0.38
UBR4-201ENST00000375218 ARHGAP35Q9NRY4 1499 aa12.71□□□□□ -0.38
UBR4-201ENST00000375218 APBB1O00213 710 aa12.7□□□□□ -0.38
UBR4-201ENST00000375218 BBXQ8WY36 941 aaPredicted RBP12.68□□□□□ -0.38
UBR4-201ENST00000375218 PKD2Q13563 968 aa12.68□□□□□ -0.38
UBR4-201ENST00000375218 SAMD9Q5K651 1589 aa12.67□□□□□ -0.38
UBR4-201ENST00000375218 GOLGA3Q08378 1498 aa12.67□□□□□ -0.38
UBR4-201ENST00000375218 SPRYD3Q8NCJ5 442 aa12.67□□□□□ -0.38
UBR4-201ENST00000375218 MYT1LQ9UL68 1186 aa12.66□□□□□ -0.38
UBR4-201ENST00000375218 EEA1Q15075 1411 aa12.66□□□□□ -0.38
UBR4-201ENST00000375218 ADAMTS12P58397 1594 aa12.65□□□□□ -0.38
UBR4-201ENST00000375218 PPP4R3CPQ6ZMV5 832 aa12.65□□□□□ -0.38
UBR4-201ENST00000375218 PRDM16Q9HAZ2 1276 aa12.64□□□□□ -0.39
UBR4-201ENST00000375218 KDM4AO75164 1064 aa12.63□□□□□ -0.39
UBR4-201ENST00000375218 CUL7Q14999 1698 aa12.63□□□□□ -0.39
UBR4-201ENST00000375218 GLIPR1L2Q4G1C9 344 aa12.62□□□□□ -0.39
UBR4-201ENST00000375218 AQRO60306 1485 aaKnown RBP eCLIP12.62□□□□□ -0.392e-7■■■■■ 33.1
UBR4-201ENST00000375218 CLIP1P30622 1438 aa12.62□□□□□ -0.39
UBR4-201ENST00000375218 MRC2Q9UBG0 1479 aa12.61□□□□□ -0.39
UBR4-201ENST00000375218 RGS22Q8NE09 1264 aa12.6□□□□□ -0.39
UBR4-201ENST00000375218 MAGI3Q5TCQ9 1506 aa12.6□□□□□ -0.39
UBR4-201ENST00000375218 PLCD4Q9BRC7 762 aa12.59□□□□□ -0.39
UBR4-201ENST00000375218 CEP170Q5SW79 1584 aa12.59□□□□□ -0.39
UBR4-201ENST00000375218 WWC1Q8IX03 1113 aa12.59□□□□□ -0.39
UBR4-201ENST00000375218 TDRD9Q8NDG6 1382 aaKnown RBP12.59□□□□□ -0.39
UBR4-201ENST00000375218 SNAPC4Q5SXM2 1469 aa12.57□□□□□ -0.4
UBR4-201ENST00000375218 NAP1L2Q9ULW6 460 aaPredicted RBP12.57□□□□□ -0.4
UBR4-201ENST00000375218 PCF11O94913 1555 aaKnown RBP12.57□□□□□ -0.4
UBR4-201ENST00000375218 PPARGC1BQ86YN6 1023 aaKnown RBP12.56□□□□□ -0.4
UBR4-201ENST00000375218 KIF27Q86VH2 1401 aa12.55□□□□□ -0.4
UBR4-201ENST00000375218 PTMSP20962 102 aa12.55□□□□□ -0.4
UBR4-201ENST00000375218 CFAP43Q8NDM7 1665 aa12.54□□□□□ -0.4
UBR4-201ENST00000375218 TMCO4Q5TGY1 634 aa12.54□□□□□ -0.4
UBR4-201ENST00000375218 CCDC27Q2M243 656 aa12.53□□□□□ -0.4
UBR4-201ENST00000375218 PDS5BQ9NTI5 1447 aa12.52□□□□□ -0.4
UBR4-201ENST00000375218 GAPVD1Q14C86 1478 aa12.52□□□□□ -0.4
UBR4-201ENST00000375218 MFAP1P55081 439 aaKnown RBP12.52□□□□□ -0.41
UBR4-201ENST00000375218 CHD1O14646 1710 aa12.5□□□□□ -0.41
UBR4-201ENST00000375218 DISP1Q96F81 1524 aa12.49□□□□□ -0.41
UBR4-201ENST00000375218 TEX2Q8IWB9 1127 aa12.48□□□□□ -0.41
UBR4-201ENST00000375218 ERCC6L2Q5T890 1561 aa12.48□□□□□ -0.41
UBR4-201ENST00000375218 VPS8Q8N3P4 1428 aa12.48□□□□□ -0.41
UBR4-201ENST00000375218 CARMIL1Q5VZK9 1371 aa12.47□□□□□ -0.41
UBR4-201ENST00000375218 KANK4Q5T7N3 995 aaPredicted RBP12.47□□□□□ -0.41
UBR4-201ENST00000375218 E9PSI1 815 aa12.46□□□□□ -0.41
UBR4-201ENST00000375218 GZF1Q9H116 711 aaPredicted RBP12.46□□□□□ -0.41
UBR4-201ENST00000375218 OS9Q13438 667 aaPredicted RBP12.46□□□□□ -0.41
UBR4-201ENST00000375218 SECISBP2LQ93073 1101 aaKnown RBP12.46□□□□□ -0.42
UBR4-201ENST00000375218 FAM50AQ14320 339 aaKnown RBP12.45□□□□□ -0.42
UBR4-201ENST00000375218 FAM43BQ6ZT52 329 aaPredicted RBP12.44□□□□□ -0.42
UBR4-201ENST00000375218 CHMP4BQ9H444 224 aaKnown RBP12.44□□□□□ -0.42
UBR4-201ENST00000375218 PCGF6Q9BYE7 350 aa12.44□□□□□ -0.42
UBR4-201ENST00000375218 FAM9BQ8IZU0 186 aa12.42□□□□□ -0.42
UBR4-201ENST00000375218 CCDC82Q8N4S0 544 aa12.42□□□□□ -0.42
UBR4-201ENST00000375218 TIAM1Q13009 1591 aa12.42□□□□□ -0.42
UBR4-201ENST00000375218 ANAPC15P60006 121 aa12.41□□□□□ -0.42
UBR4-201ENST00000375218 CC2D2BQ6DHV5 1058 aa12.41□□□□□ -0.42
UBR4-201ENST00000375218 SHROOM2Q13796 1616 aa12.41□□□□□ -0.42
UBR4-201ENST00000375218 ARHGEF11O15085 1522 aa12.41□□□□□ -0.42
UBR4-201ENST00000375218 ZNF316A6NFI3 1004 aaPredicted RBP12.4□□□□□ -0.42
UBR4-201ENST00000375218 GRIN2BQ13224 1484 aa12.4□□□□□ -0.42
UBR4-201ENST00000375218 IFT140Q96RY7 1462 aa12.4□□□□□ -0.43
UBR4-201ENST00000375218 IFNLR1Q8IU57 520 aaPredicted RBP12.39□□□□□ -0.43
UBR4-201ENST00000375218 FHOD3Q2V2M9 1422 aa12.38□□□□□ -0.43
UBR4-201ENST00000375218 ERICH6BQ5W0A0 696 aa12.37□□□□□ -0.43
UBR4-201ENST00000375218 KIAA0556O60303 1618 aa12.37□□□□□ -0.43
UBR4-201ENST00000375218 UGGT2Q9NYU1 1516 aa12.36□□□□□ -0.43
UBR4-201ENST00000375218 PATL2C9JE40 543 aaKnown RBP12.36□□□□□ -0.43
UBR4-201ENST00000375218 GRIN2AQ12879 1464 aa12.36□□□□□ -0.43
UBR4-201ENST00000375218 IQGAP2Q13576 1575 aa12.35□□□□□ -0.43
UBR4-201ENST00000375218 GPATCH11Q8N954 259 aa12.34□□□□□ -0.43
UBR4-201ENST00000375218 LMOD2Q6P5Q4 547 aa12.34□□□□□ -0.43
UBR4-201ENST00000375218 NUP160Q12769 1436 aa12.33□□□□□ -0.43
UBR4-201ENST00000375218 KDM6BO15054 1643 aa12.33□□□□□ -0.44
UBR4-201ENST00000375218 KCNG1Q9UIX4 513 aa12.32□□□□□ -0.44
UBR4-201ENST00000375218 DENND4BO75064 1496 aaPredicted RBP12.32□□□□□ -0.44
UBR4-201ENST00000375218 FHAD1B1AJZ9 1412 aa12.31□□□□□ -0.44
UBR4-201ENST00000375218 SLC24A3Q9HC58 644 aa12.3□□□□□ -0.44
UBR4-201ENST00000375218 CLASP1Q7Z460 1538 aa12.3□□□□□ -0.44
UBR4-201ENST00000375218 PTPRKQ15262 1439 aa12.3□□□□□ -0.44
UBR4-201ENST00000375218 SMARCA5O60264 1052 aaPredicted RBP12.3□□□□□ -0.44
UBR4-201ENST00000375218 MAP3K1Q13233 1512 aa12.3□□□□□ -0.44
UBR4-201ENST00000375218 EFCAB5A4FU69 1503 aa12.29□□□□□ -0.44
UBR4-201ENST00000375218 ECM2O94769 699 aaPredicted RBP12.29□□□□□ -0.44
UBR4-201ENST00000375218 PHLDB1Q86UU1 1377 aa12.29□□□□□ -0.44
UBR4-201ENST00000375218 CHGAP10645 457 aaKnown RBP12.28□□□□□ -0.44
UBR4-201ENST00000375218 CDK13Q14004 1512 aaKnown RBP12.28□□□□□ -0.44
UBR4-201ENST00000375218 LRRC9Q6ZRR7 1453 aa12.28□□□□□ -0.44
UBR4-201ENST00000375218 FOXD4L6Q3SYB3 417 aaPredicted RBP12.27□□□□□ -0.44
UBR4-201ENST00000375218 FOXD4L3Q6VB84 417 aaPredicted RBP12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms