RNA–Protein interactions for RNA: ENST00000372189.7

RAPGEF1-201, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RAPGEF1, Length 6,085 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-201ENST00000372189 SPAG9O60271 1321 aaKnown RBP17.27■□□□□ 0.36
RAPGEF1-201ENST00000372189 STK26Q9P289 416 aa17.27■□□□□ 0.36
RAPGEF1-201ENST00000372189 LAS1LQ9Y4W2 734 aaKnown RBP17.26■□□□□ 0.35
RAPGEF1-201ENST00000372189 NUP155O75694 1391 aa17.26■□□□□ 0.35
RAPGEF1-201ENST00000372189 CC2D1BQ5T0F9 858 aaKnown RBP17.26■□□□□ 0.35
RAPGEF1-201ENST00000372189 RSPH4AQ5TD94 716 aa17.26■□□□□ 0.35
RAPGEF1-201ENST00000372189 PTPRGP23470 1445 aa17.25■□□□□ 0.35
RAPGEF1-201ENST00000372189 NEUROD2Q15784 382 aa17.24■□□□□ 0.35
RAPGEF1-201ENST00000372189 PNNQ9H307 717 aaKnown RBP17.24■□□□□ 0.35
RAPGEF1-201ENST00000372189 SUPT16HQ9Y5B9 1047 aaKnown RBP17.23■□□□□ 0.35
RAPGEF1-201ENST00000372189 U2SURPO15042 1029 aaKnown RBP17.23■□□□□ 0.35
RAPGEF1-201ENST00000372189 GOLGA6L22H0YM25 854 aa17.22■□□□□ 0.35
RAPGEF1-201ENST00000372189 PRKCSHP14314 528 aaPredicted RBP17.22■□□□□ 0.35
RAPGEF1-201ENST00000372189 WASHC2CQ9Y4E1 1318 aa17.21■□□□□ 0.35
RAPGEF1-201ENST00000372189 PPP4R2Q9NY27 417 aa17.21■□□□□ 0.35
RAPGEF1-201ENST00000372189 SOX12O15370 315 aa17.21■□□□□ 0.35
RAPGEF1-201ENST00000372189 EID1Q9Y6B2 187 aa17.21■□□□□ 0.35
RAPGEF1-201ENST00000372189 FOXD1Q16676 465 aa17.21■□□□□ 0.34
RAPGEF1-201ENST00000372189 GAPVD1Q14C86 1478 aa17.2■□□□□ 0.34
RAPGEF1-201ENST00000372189 TIMELESSQ9UNS1 1208 aa17.2■□□□□ 0.34
RAPGEF1-201ENST00000372189 NPHP1O15259 732 aa17.2■□□□□ 0.34
RAPGEF1-201ENST00000372189 NCAPD3P42695 1498 aa17.2■□□□□ 0.34
RAPGEF1-201ENST00000372189 FGD5Q6ZNL6 1462 aa17.19■□□□□ 0.34
RAPGEF1-201ENST00000372189 MPHOSPH9Q99550 1183 aa17.19■□□□□ 0.34
RAPGEF1-201ENST00000372189 HDGFL2Q7Z4V5 671 aaPredicted RBP17.19■□□□□ 0.34
RAPGEF1-201ENST00000372189 NOP58Q9Y2X3 529 aaKnown RBP17.19■□□□□ 0.34
RAPGEF1-201ENST00000372189 FTSJ3Q8IY81 847 aaKnown RBP17.17■□□□□ 0.34
RAPGEF1-201ENST00000372189 RTN4Q9NQC3 1192 aaKnown RBP17.17■□□□□ 0.34
RAPGEF1-201ENST00000372189 SENP3-EIF4A1A0A087X0R7 540 aa17.17■□□□□ 0.34
RAPGEF1-201ENST00000372189 MORC1Q86VD1 984 aa17.17■□□□□ 0.34
RAPGEF1-201ENST00000372189 PAK3O75914 559 aaPredicted RBP17.15■□□□□ 0.34
RAPGEF1-201ENST00000372189 RAD54L2Q9Y4B4 1467 aa17.14■□□□□ 0.33
RAPGEF1-201ENST00000372189 ROCK2O75116 1388 aaKnown RBP17.13■□□□□ 0.33
RAPGEF1-201ENST00000372189 RAB3GAP2Q9H2M9 1393 aa17.11■□□□□ 0.33
RAPGEF1-201ENST00000372189 EIF3AQ14152 1382 aaKnown RBP17.1■□□□□ 0.33
RAPGEF1-201ENST00000372189 PKNOX2Q96KN3 472 aa17.09■□□□□ 0.33
RAPGEF1-201ENST00000372189 HSPA5P11021 654 aaKnown RBP17.08■□□□□ 0.33
RAPGEF1-201ENST00000372189 PTMAP06454 111 aaKnown RBP17.07■□□□□ 0.32
RAPGEF1-201ENST00000372189 AQRO60306 1485 aaKnown RBP eCLIP17.07■□□□□ 0.322e-6■■■■■ 32.2
RAPGEF1-201ENST00000372189 NUTM2DQ5VT03 806 aaPredicted RBP17.07■□□□□ 0.32
RAPGEF1-201ENST00000372189 CSB-PGBD3P0DP91 1061 aa17.07■□□□□ 0.32
RAPGEF1-201ENST00000372189 RUSC2Q8N2Y8 1516 aa17.06■□□□□ 0.32
RAPGEF1-201ENST00000372189 RTF1Q92541 710 aaKnown RBP17.05■□□□□ 0.32
RAPGEF1-201ENST00000372189 FAM69CQ0P6D2 419 aa17.05■□□□□ 0.32
RAPGEF1-201ENST00000372189 CHMP4BQ9H444 224 aaKnown RBP17.05■□□□□ 0.32
RAPGEF1-201ENST00000372189 CASC1Q6TDU7 716 aa17.04■□□□□ 0.32
RAPGEF1-201ENST00000372189 IGF1RP08069 1367 aa17.04■□□□□ 0.32
RAPGEF1-201ENST00000372189 FRAT1Q92837 279 aaPredicted RBP17.04■□□□□ 0.32
RAPGEF1-201ENST00000372189 CC2D2AQ9P2K1 1620 aa17.04■□□□□ 0.32
RAPGEF1-201ENST00000372189 MS4A1P11836 297 aa17.03■□□□□ 0.32
RAPGEF1-201ENST00000372189 VSIG10Q8N0Z9 540 aa17.03■□□□□ 0.32
RAPGEF1-201ENST00000372189 KTN1Q86UP2 1357 aaKnown RBP17.02■□□□□ 0.31
RAPGEF1-201ENST00000372189 DNTTIP2Q5QJE6 756 aaKnown RBP17.01■□□□□ 0.31
RAPGEF1-201ENST00000372189 OS9Q13438 667 aaPredicted RBP17.01■□□□□ 0.31
RAPGEF1-201ENST00000372189 MRC2Q9UBG0 1479 aa17.01■□□□□ 0.31
RAPGEF1-201ENST00000372189 DEKP35659 375 aaKnown RBP17■□□□□ 0.31
RAPGEF1-201ENST00000372189 CCDC9Q9Y3X0 531 aaKnown RBP16.99■□□□□ 0.31
RAPGEF1-201ENST00000372189 GRIN2BQ13224 1484 aa16.99■□□□□ 0.31
RAPGEF1-201ENST00000372189 NGDNQ8NEJ9 315 aaKnown RBP16.99■□□□□ 0.31
RAPGEF1-201ENST00000372189 TERF2IPQ9NYB0 399 aa16.99■□□□□ 0.31
RAPGEF1-201ENST00000372189 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.97■□□□□ 0.31
RAPGEF1-201ENST00000372189 B4GALNT3Q6L9W6 998 aa16.97■□□□□ 0.31
RAPGEF1-201ENST00000372189 RBM19Q9Y4C8 960 aaKnown RBP16.97■□□□□ 0.31
RAPGEF1-201ENST00000372189 CCER2I3L3R5 266 aa16.97■□□□□ 0.31
RAPGEF1-201ENST00000372189 UACAQ9BZF9 1416 aa16.96■□□□□ 0.3
RAPGEF1-201ENST00000372189 GOLGA2Q08379 1002 aa16.95■□□□□ 0.3
RAPGEF1-201ENST00000372189 PRDM2Q13029 1718 aa16.95■□□□□ 0.3
RAPGEF1-201ENST00000372189 RGS3P49796 1198 aa16.95■□□□□ 0.3
RAPGEF1-201ENST00000372189 CCDC144AA2RUR9 1427 aa16.94■□□□□ 0.3
RAPGEF1-201ENST00000372189 NESP48681 1621 aa16.94■□□□□ 0.3
RAPGEF1-201ENST00000372189 HOMEZQ8IX15 550 aa16.94■□□□□ 0.3
RAPGEF1-201ENST00000372189 ZRSR1Q15695 479 aaKnown RBP16.93■□□□□ 0.3
RAPGEF1-201ENST00000372189 L1TD1Q5T7N2 865 aaKnown RBP16.93■□□□□ 0.3
RAPGEF1-201ENST00000372189 AEBP2Q6ZN18 517 aaPredicted RBP16.93■□□□□ 0.3
RAPGEF1-201ENST00000372189 IFT140Q96RY7 1462 aa16.92■□□□□ 0.3
RAPGEF1-201ENST00000372189 L3MBTL2Q969R5 705 aa16.92■□□□□ 0.3
RAPGEF1-201ENST00000372189 U2AF1L5P0DN76 240 aaPredicted RBP16.92■□□□□ 0.3
RAPGEF1-201ENST00000372189 U2AF1Q01081 240 aaKnown RBP eCLIP16.92■□□□□ 0.3
RAPGEF1-201ENST00000372189 CFTRP13569 1480 aa16.92■□□□□ 0.3
RAPGEF1-201ENST00000372189 VGFO15240 615 aaPredicted RBP16.91■□□□□ 0.3
RAPGEF1-201ENST00000372189 CALD1Q05682 793 aaKnown RBP16.91■□□□□ 0.3
RAPGEF1-201ENST00000372189 TRAK1Q9UPV9 953 aa16.91■□□□□ 0.3
RAPGEF1-201ENST00000372189 HSP90AB1P08238 724 aaKnown RBP16.9■□□□□ 0.3
RAPGEF1-201ENST00000372189 RALBP1Q15311 655 aa16.9■□□□□ 0.3
RAPGEF1-201ENST00000372189 NUTM2FA1L443 756 aa16.89■□□□□ 0.29
RAPGEF1-201ENST00000372189 STK11IPQ8N1F8 1099 aa16.89■□□□□ 0.29
RAPGEF1-201ENST00000372189 HMGXB3Q12766 1538 aa16.88■□□□□ 0.29
RAPGEF1-201ENST00000372189 AMPHP49418 695 aa16.86■□□□□ 0.29
RAPGEF1-201ENST00000372189 PRG4Q92954 1404 aaPredicted RBP16.86■□□□□ 0.29
RAPGEF1-201ENST00000372189 HMGB1P09429 215 aaKnown RBP16.86■□□□□ 0.29
RAPGEF1-201ENST00000372189 MYOM3Q5VTT5 1437 aa16.85■□□□□ 0.29
RAPGEF1-201ENST00000372189 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.85■□□□□ 0.29
RAPGEF1-201ENST00000372189 ZNF330Q9Y3S2 320 aaPredicted RBP16.85■□□□□ 0.29
RAPGEF1-201ENST00000372189 PDE4CQ08493 712 aa16.84■□□□□ 0.29
RAPGEF1-201ENST00000372189 HSCBQ8IWL3 235 aa16.84■□□□□ 0.29
RAPGEF1-201ENST00000372189 CUX1P39880 1505 aa16.83■□□□□ 0.28
RAPGEF1-201ENST00000372189 CHMP4AQ9BY43 222 aa16.82■□□□□ 0.28
RAPGEF1-201ENST00000372189 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.82■□□□□ 0.28
RAPGEF1-201ENST00000372189 GOLGA6L6A8MZA4 724 aa16.81■□□□□ 0.28
RAPGEF1-201ENST00000372189 IPO8O15397 1037 aaKnown RBP16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms