RNA–Protein interactions for RNA: ENST00000368215.7

PTPRK-206, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRK, Length 4,651 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-206ENST00000368215 EFCAB5A4FU69 1503 aa11.26□□□□□ -0.61
PTPRK-206ENST00000368215 ROCK2O75116 1388 aaKnown RBP11.25□□□□□ -0.61
PTPRK-206ENST00000368215 NBR1Q14596 966 aa11.25□□□□□ -0.61
PTPRK-206ENST00000368215 GRIN2BQ13224 1484 aa11.24□□□□□ -0.61
PTPRK-206ENST00000368215 ST20-MTHFSA0A0A6YYL1 179 aa11.24□□□□□ -0.61
PTPRK-206ENST00000368215 PRKRIP1Q9H875 184 aaPredicted RBP11.24□□□□□ -0.61
PTPRK-206ENST00000368215 WDR97A6NE52 1622 aa11.23□□□□□ -0.61
PTPRK-206ENST00000368215 PRDM2Q13029 1718 aa11.23□□□□□ -0.61
PTPRK-206ENST00000368215 TMF1P82094 1093 aa11.23□□□□□ -0.61
PTPRK-206ENST00000368215 RBM19Q9Y4C8 960 aaKnown RBP11.23□□□□□ -0.61
PTPRK-206ENST00000368215 NEFMP07197 916 aa11.23□□□□□ -0.61
PTPRK-206ENST00000368215 PTPRGP23470 1445 aa11.23□□□□□ -0.61
PTPRK-206ENST00000368215 TNNT2P45379 298 aaPredicted RBP11.23□□□□□ -0.61
PTPRK-206ENST00000368215 EFCAB2Q5VUJ9 269 aa11.23□□□□□ -0.61
PTPRK-206ENST00000368215 ESF1Q9H501 851 aaKnown RBP11.23□□□□□ -0.61
PTPRK-206ENST00000368215 WASHC2AQ641Q2 1341 aa11.22□□□□□ -0.61
PTPRK-206ENST00000368215 NEUROD2Q15784 382 aa11.21□□□□□ -0.61
PTPRK-206ENST00000368215 HFM1A2PYH4 1435 aa11.21□□□□□ -0.61
PTPRK-206ENST00000368215 CDCA8Q53HL2 280 aa11.21□□□□□ -0.62
PTPRK-206ENST00000368215 URB2Q14146 1524 aaKnown RBP11.2□□□□□ -0.62
PTPRK-206ENST00000368215 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.2□□□□□ -0.62
PTPRK-206ENST00000368215 ZBTB47Q9UFB7 747 aaPredicted RBP11.2□□□□□ -0.62
PTPRK-206ENST00000368215 ANP32EQ9BTT0 268 aa11.2□□□□□ -0.62
PTPRK-206ENST00000368215 CDK13Q14004 1512 aaKnown RBP11.19□□□□□ -0.62
PTPRK-206ENST00000368215 USP47Q96K76 1375 aa11.19□□□□□ -0.62
PTPRK-206ENST00000368215 GGT6Q6P531 493 aa11.19□□□□□ -0.62
PTPRK-206ENST00000368215 MRC2Q9UBG0 1479 aa11.19□□□□□ -0.62
PTPRK-206ENST00000368215 NAIPQ13075 1403 aa11.19□□□□□ -0.62
PTPRK-206ENST00000368215 NBPF8Q3BBV2 869 aa11.18□□□□□ -0.62
PTPRK-206ENST00000368215 PRG4Q92954 1404 aaPredicted RBP11.18□□□□□ -0.62
PTPRK-206ENST00000368215 SLC24A1O60721 1099 aa11.18□□□□□ -0.62
PTPRK-206ENST00000368215 KIF7Q2M1P5 1343 aa11.18□□□□□ -0.62
PTPRK-206ENST00000368215 KIF3BO15066 747 aa11.18□□□□□ -0.62
PTPRK-206ENST00000368215 EHBP1L1Q8N3D4 1523 aa11.17□□□□□ -0.62
PTPRK-206ENST00000368215 KTN1Q86UP2 1357 aaKnown RBP11.17□□□□□ -0.62
PTPRK-206ENST00000368215 CCDC7Q96M83 1385 aa11.17□□□□□ -0.62
PTPRK-206ENST00000368215 RSPH4AQ5TD94 716 aa11.16□□□□□ -0.62
PTPRK-206ENST00000368215 SNAPC4Q5SXM2 1469 aa11.16□□□□□ -0.62
PTPRK-206ENST00000368215 SAFB2Q14151 953 aaKnown RBP eCLIP11.15□□□□□ -0.62
PTPRK-206ENST00000368215 SPAG9O60271 1321 aaKnown RBP11.15□□□□□ -0.62
PTPRK-206ENST00000368215 MAP3K1Q13233 1512 aa11.15□□□□□ -0.62
PTPRK-206ENST00000368215 KANK1Q14678 1352 aa11.15□□□□□ -0.62
PTPRK-206ENST00000368215 LAMC3Q9Y6N6 1575 aa11.15□□□□□ -0.62
PTPRK-206ENST00000368215 ANKRD50Q9ULJ7 1429 aa11.15□□□□□ -0.63
PTPRK-206ENST00000368215 EPRSP07814 1512 aaKnown RBP11.15□□□□□ -0.63
PTPRK-206ENST00000368215 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.15□□□□□ -0.635e-6■■□□□ 12.8
PTPRK-206ENST00000368215 KIF15Q9NS87 1388 aa11.14□□□□□ -0.63
PTPRK-206ENST00000368215 RALBP1Q15311 655 aa11.14□□□□□ -0.63
PTPRK-206ENST00000368215 CCDC144AA2RUR9 1427 aa11.14□□□□□ -0.63
PTPRK-206ENST00000368215 IFT140Q96RY7 1462 aa11.13□□□□□ -0.63
PTPRK-206ENST00000368215 NUDCQ9Y266 331 aa11.13□□□□□ -0.63
PTPRK-206ENST00000368215 CCDC184Q52MB2 194 aa11.13□□□□□ -0.63
PTPRK-206ENST00000368215 CUL7Q14999 1698 aa11.12□□□□□ -0.63
PTPRK-206ENST00000368215 MIA2Q96PC5 1412 aa11.12□□□□□ -0.63
PTPRK-206ENST00000368215 PPM1GO15355 546 aaPredicted RBP11.12□□□□□ -0.63
PTPRK-206ENST00000368215 SUPT6HQ7KZ85 1726 aaKnown RBP11.12□□□□□ -0.63
PTPRK-206ENST00000368215 PTPRKQ15262 1439 aa11.11□□□□□ -0.63
PTPRK-206ENST00000368215 NLRP13Q86W25 1043 aa11.11□□□□□ -0.63
PTPRK-206ENST00000368215 PANK3Q9H999 370 aa11.11□□□□□ -0.63
PTPRK-206ENST00000368215 RCAN3Q9UKA8 241 aa11.11□□□□□ -0.63
PTPRK-206ENST00000368215 NUTM2DQ5VT03 806 aaPredicted RBP11.11□□□□□ -0.63
PTPRK-206ENST00000368215 CNTLNQ9NXG0 1405 aa11.11□□□□□ -0.63
PTPRK-206ENST00000368215 HECW1Q76N89 1606 aa11.1□□□□□ -0.63
PTPRK-206ENST00000368215 DAPK1P53355 1430 aa11.1□□□□□ -0.63
PTPRK-206ENST00000368215 ZNF608Q9ULD9 1512 aaPredicted RBP11.1□□□□□ -0.63
PTPRK-206ENST00000368215 IQGAP2Q13576 1575 aa11.1□□□□□ -0.63
PTPRK-206ENST00000368215 MAPKBP1O60336 1514 aa11.1□□□□□ -0.63
PTPRK-206ENST00000368215 TROQ12816 1431 aaPredicted RBP11.1□□□□□ -0.63
PTPRK-206ENST00000368215 RGS3P49796 1198 aa11.09□□□□□ -0.63
PTPRK-206ENST00000368215 FRAT1Q92837 279 aaPredicted RBP11.09□□□□□ -0.63
PTPRK-206ENST00000368215 ZBED9Q6R2W3 1325 aa11.09□□□□□ -0.63
PTPRK-206ENST00000368215 CFAP53Q96M91 514 aa11.09□□□□□ -0.63
PTPRK-206ENST00000368215 C11orf95C9JLR9 678 aaPredicted RBP11.09□□□□□ -0.63
PTPRK-206ENST00000368215 STK26Q9P289 416 aa11.09□□□□□ -0.63
PTPRK-206ENST00000368215 KIAA0586Q9BVV6 1533 aa11.08□□□□□ -0.64
PTPRK-206ENST00000368215 POGKQ9P215 609 aa11.08□□□□□ -0.64
PTPRK-206ENST00000368215 MLECQ14165 292 aa11.08□□□□□ -0.64
PTPRK-206ENST00000368215 MYBBP1AQ9BQG0 1328 aaKnown RBP11.08□□□□□ -0.64
PTPRK-206ENST00000368215 ERICH6BQ5W0A0 696 aa11.08□□□□□ -0.64
PTPRK-206ENST00000368215 PLB1Q6P1J6 1458 aa11.07□□□□□ -0.64
PTPRK-206ENST00000368215 PTPN23Q9H3S7 1636 aa11.07□□□□□ -0.64
PTPRK-206ENST00000368215 MORC1Q86VD1 984 aa11.06□□□□□ -0.64
PTPRK-206ENST00000368215 U2SURPO15042 1029 aaKnown RBP11.06□□□□□ -0.64
PTPRK-206ENST00000368215 CCDC146Q8IYE0 955 aa11.06□□□□□ -0.64
PTPRK-206ENST00000368215 NBPF1Q3BBV0 1214 aa11.06□□□□□ -0.64
PTPRK-206ENST00000368215 AFAP1Q8N556 730 aa11.06□□□□□ -0.64
PTPRK-206ENST00000368215 UPF2Q9HAU5 1272 aaKnown RBP11.05□□□□□ -0.64
PTPRK-206ENST00000368215 SRPK2P78362 688 aaKnown RBP11.05□□□□□ -0.64
PTPRK-206ENST00000368215 ABCC5O15440 1437 aa11.04□□□□□ -0.64
PTPRK-206ENST00000368215 C9orf84Q5VXU9 1444 aa11.04□□□□□ -0.64
PTPRK-206ENST00000368215 TRAK1Q9UPV9 953 aa11.04□□□□□ -0.64
PTPRK-206ENST00000368215 NOP58Q9Y2X3 529 aaKnown RBP11.04□□□□□ -0.64
PTPRK-206ENST00000368215 LAS1LQ9Y4W2 734 aaKnown RBP11.04□□□□□ -0.64
PTPRK-206ENST00000368215 KIAA1107Q9UPP5 1409 aa11.04□□□□□ -0.64
PTPRK-206ENST00000368215 ARID4BQ4LE39 1312 aaPredicted RBP11.04□□□□□ -0.64
PTPRK-206ENST00000368215 PLIN1O60240 522 aa11.03□□□□□ -0.64
PTPRK-206ENST00000368215 PLEKHG5O94827 1062 aa11.03□□□□□ -0.64
PTPRK-206ENST00000368215 SYNJ2O15056 1496 aa11.03□□□□□ -0.64
PTPRK-206ENST00000368215 ANKRD30BQ9BXX2 1392 aa11.02□□□□□ -0.64
PTPRK-206ENST00000368215 WASHC2CQ9Y4E1 1318 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms