RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 ARID3CA6NKF2 412 aa11.43□□□□□ -0.58
SYNE1-209ENST00000367257 CHMP4AQ9BY43 222 aa11.43□□□□□ -0.58
SYNE1-209ENST00000367257 SALL2Q9Y467 1007 aaPredicted RBP11.43□□□□□ -0.58
SYNE1-209ENST00000367257 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.43□□□□□ -0.58
SYNE1-209ENST00000367257 FANCD2Q9BXW9 1451 aa11.42□□□□□ -0.58
SYNE1-209ENST00000367257 TNNT3P45378 269 aaPredicted RBP11.42□□□□□ -0.58
SYNE1-209ENST00000367257 CHMP7Q8WUX9 453 aaPredicted RBP11.42□□□□□ -0.58
SYNE1-209ENST00000367257 MCCP23508 829 aa11.4□□□□□ -0.58
SYNE1-209ENST00000367257 KDM2AQ9Y2K7 1162 aa11.4□□□□□ -0.58
SYNE1-209ENST00000367257 ABCA10Q8WWZ4 1543 aa11.39□□□□□ -0.59
SYNE1-209ENST00000367257 CARD11Q9BXL7 1154 aa11.38□□□□□ -0.59
SYNE1-209ENST00000367257 PPP1R15AO75807 674 aaPredicted RBP11.38□□□□□ -0.59
SYNE1-209ENST00000367257 HSCBQ8IWL3 235 aa11.38□□□□□ -0.59
SYNE1-209ENST00000367257 MSNP26038 577 aaKnown RBP11.37□□□□□ -0.59
SYNE1-209ENST00000367257 PDE4CQ08493 712 aa11.37□□□□□ -0.59
SYNE1-209ENST00000367257 CFDP1Q9UEE9 299 aaPredicted RBP11.36□□□□□ -0.59
SYNE1-209ENST00000367257 KIF21BO75037 1637 aa11.36□□□□□ -0.59
SYNE1-209ENST00000367257 POLA1P09884 1462 aaPredicted RBP11.36□□□□□ -0.59
SYNE1-209ENST00000367257 HSP90AB1P08238 724 aaKnown RBP11.36□□□□□ -0.59
SYNE1-209ENST00000367257 KANK1Q14678 1352 aa11.36□□□□□ -0.59
SYNE1-209ENST00000367257 USP35Q9P2H5 1018 aa11.36□□□□□ -0.59
SYNE1-209ENST00000367257 CCNB3Q8WWL7 1395 aa11.35□□□□□ -0.59
SYNE1-209ENST00000367257 TMF1P82094 1093 aa11.35□□□□□ -0.59
SYNE1-209ENST00000367257 CALD1Q05682 793 aaKnown RBP11.35□□□□□ -0.59
SYNE1-209ENST00000367257 HDGFP51858 240 aaKnown RBP11.35□□□□□ -0.59
SYNE1-209ENST00000367257 HTATSF1O43719 755 aaKnown RBP11.34□□□□□ -0.59
SYNE1-209ENST00000367257 MRC2Q9UBG0 1479 aa11.33□□□□□ -0.6
SYNE1-209ENST00000367257 RRP7BPQ9NSQ0 103 aa11.33□□□□□ -0.6
SYNE1-209ENST00000367257 EIF4G3O43432 1585 aaKnown RBP11.33□□□□□ -0.6
SYNE1-209ENST00000367257 GBP4Q96PP9 640 aa11.32□□□□□ -0.6
SYNE1-209ENST00000367257 TCERG1O14776 1098 aaKnown RBP11.32□□□□□ -0.6
SYNE1-209ENST00000367257 IPO8O15397 1037 aaKnown RBP11.32□□□□□ -0.6
SYNE1-209ENST00000367257 HDAC5Q9UQL6 1122 aa11.32□□□□□ -0.6
SYNE1-209ENST00000367257 PHLDB1Q86UU1 1377 aa11.31□□□□□ -0.6
SYNE1-209ENST00000367257 FANCIQ9NVI1 1328 aa11.31□□□□□ -0.6
SYNE1-209ENST00000367257 APPP05067 770 aa11.31□□□□□ -0.6
SYNE1-209ENST00000367257 SYAP1Q96A49 352 aaPredicted RBP11.31□□□□□ -0.6
SYNE1-209ENST00000367257 GOLGA6L4A6NEF3 574 aa11.3□□□□□ -0.6
SYNE1-209ENST00000367257 RALBP1Q15311 655 aa11.3□□□□□ -0.6
SYNE1-209ENST00000367257 ROCK2O75116 1388 aaKnown RBP11.3□□□□□ -0.6
SYNE1-209ENST00000367257 FGD5Q6ZNL6 1462 aa11.29□□□□□ -0.6
SYNE1-209ENST00000367257 SETD5Q9C0A6 1442 aa11.29□□□□□ -0.6
SYNE1-209ENST00000367257 IPO9Q96P70 1041 aaKnown RBP11.29□□□□□ -0.6
SYNE1-209ENST00000367257 ARID3AQ99856 593 aa11.29□□□□□ -0.6
SYNE1-209ENST00000367257 CUL7Q14999 1698 aa11.29□□□□□ -0.6
SYNE1-209ENST00000367257 RUSC2Q8N2Y8 1516 aa11.28□□□□□ -0.6
SYNE1-209ENST00000367257 KTN1Q86UP2 1357 aaKnown RBP11.28□□□□□ -0.6
SYNE1-209ENST00000367257 PDE3BQ13370 1112 aa11.28□□□□□ -0.6
SYNE1-209ENST00000367257 CSPP1Q1MSJ5 1256 aa11.27□□□□□ -0.6
SYNE1-209ENST00000367257 ERICH3Q5RHP9 1530 aa11.27□□□□□ -0.6
SYNE1-209ENST00000367257 VPS8Q8N3P4 1428 aa11.27□□□□□ -0.61
SYNE1-209ENST00000367257 PRXQ9BXM0 1461 aa11.27□□□□□ -0.61
SYNE1-209ENST00000367257 LRRIQ1Q96JM4 1722 aa11.27□□□□□ -0.61
SYNE1-209ENST00000367257 ADAMTS12P58397 1594 aa11.27□□□□□ -0.61
SYNE1-209ENST00000367257 SHROOM2Q13796 1616 aa11.27□□□□□ -0.61
SYNE1-209ENST00000367257 CCDC34Q96HJ3 373 aa11.27□□□□□ -0.61
SYNE1-209ENST00000367257 CTTNBP2Q8WZ74 1663 aa11.27□□□□□ -0.61
SYNE1-209ENST00000367257 ARHGAP35Q9NRY4 1499 aa11.27□□□□□ -0.61
SYNE1-209ENST00000367257 CHMP4CQ96CF2 233 aa11.26□□□□□ -0.61
SYNE1-209ENST00000367257 EIF3AQ14152 1382 aaKnown RBP11.26□□□□□ -0.61
SYNE1-209ENST00000367257 KIAA2012Q0VF49 1180 aa11.25□□□□□ -0.61
SYNE1-209ENST00000367257 FGD1P98174 961 aa11.25□□□□□ -0.61
SYNE1-209ENST00000367257 PMFBP1Q8TBY8 1022 aa11.25□□□□□ -0.61
SYNE1-209ENST00000367257 RWDD1Q9H446 243 aaPredicted RBP11.25□□□□□ -0.61
SYNE1-209ENST00000367257 GSE1Q14687 1217 aa11.24□□□□□ -0.61
SYNE1-209ENST00000367257 POGKQ9P215 609 aa11.24□□□□□ -0.61
SYNE1-209ENST00000367257 TPM4P67936 248 aa11.23□□□□□ -0.61
SYNE1-209ENST00000367257 KCNJ4P48050 445 aa11.23□□□□□ -0.61
SYNE1-209ENST00000367257 PDS5BQ9NTI5 1447 aa11.23□□□□□ -0.61
SYNE1-209ENST00000367257 OS9Q13438 667 aaPredicted RBP11.23□□□□□ -0.61
SYNE1-209ENST00000367257 FMN1Q68DA7 1419 aa11.22□□□□□ -0.61
SYNE1-209ENST00000367257 GOLGA6L3A6NEY3 463 aa11.21□□□□□ -0.62
SYNE1-209ENST00000367257 B4GALNT3Q6L9W6 998 aa11.21□□□□□ -0.62
SYNE1-209ENST00000367257 RGS3P49796 1198 aa11.2□□□□□ -0.62
SYNE1-209ENST00000367257 NGEFQ8N5V2 710 aa11.2□□□□□ -0.62
SYNE1-209ENST00000367257 SAMD9Q5K651 1589 aa11.2□□□□□ -0.62
SYNE1-209ENST00000367257 PHF14O94880 888 aa11.19□□□□□ -0.62
SYNE1-209ENST00000367257 RSPH4AQ5TD94 716 aa11.19□□□□□ -0.62
SYNE1-209ENST00000367257 CHD1O14646 1710 aa11.18□□□□□ -0.62
SYNE1-209ENST00000367257 KIAA1211Q6ZU35 1233 aa11.18□□□□□ -0.62
SYNE1-209ENST00000367257 FRAT1Q92837 279 aaPredicted RBP11.18□□□□□ -0.62
SYNE1-209ENST00000367257 CARMIL1Q5VZK9 1371 aa11.18□□□□□ -0.62
SYNE1-209ENST00000367257 RGL3Q3MIN7 710 aa11.18□□□□□ -0.62
SYNE1-209ENST00000367257 C14orf37Q86TY3 774 aa11.18□□□□□ -0.62
SYNE1-209ENST00000367257 CALRP27797 417 aaKnown RBP11.18□□□□□ -0.62
SYNE1-209ENST00000367257 IL27Q8NEV9 243 aa11.18□□□□□ -0.62
SYNE1-209ENST00000367257 CARMIL2Q6F5E8 1435 aa11.18□□□□□ -0.62
SYNE1-209ENST00000367257 RRP9O43818 475 aaKnown RBP11.17□□□□□ -0.62
SYNE1-209ENST00000367257 MAP7D2Q96T17 732 aa11.17□□□□□ -0.62
SYNE1-209ENST00000367257 SOGA1O94964 1423 aa11.17□□□□□ -0.62
SYNE1-209ENST00000367257 HDGFL2Q7Z4V5 671 aaPredicted RBP11.17□□□□□ -0.62
SYNE1-209ENST00000367257 KIF3AQ9Y496 699 aa11.17□□□□□ -0.62
SYNE1-209ENST00000367257 MORC1Q86VD1 984 aa11.16□□□□□ -0.62
SYNE1-209ENST00000367257 HMMRO75330 724 aa11.16□□□□□ -0.62
SYNE1-209ENST00000367257 ERCC6Q03468 1493 aa11.16□□□□□ -0.62
SYNE1-209ENST00000367257 LMOD3Q0VAK6 560 aa11.16□□□□□ -0.62
SYNE1-209ENST00000367257 ZNF608Q9ULD9 1512 aaPredicted RBP11.15□□□□□ -0.62
SYNE1-209ENST00000367257 CLASP1Q7Z460 1538 aa11.15□□□□□ -0.62
SYNE1-209ENST00000367257 PLCB2Q00722 1185 aa11.15□□□□□ -0.62
SYNE1-209ENST00000367257 GPATCH3Q96I76 525 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms