RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 CHMP7Q8WUX9 453 aaPredicted RBP9.25□□□□□ -0.93
SYNE1-208ENST00000367256 POGKQ9P215 609 aa9.24□□□□□ -0.93
SYNE1-208ENST00000367256 WRNQ14191 1432 aaPredicted RBP eCLIP9.24□□□□□ -0.93
SYNE1-208ENST00000367256 CCNB3Q8WWL7 1395 aa9.24□□□□□ -0.93
SYNE1-208ENST00000367256 LMOD2Q6P5Q4 547 aa9.23□□□□□ -0.93
SYNE1-208ENST00000367256 KIAA1211Q6ZU35 1233 aa9.23□□□□□ -0.93
SYNE1-208ENST00000367256 U2SURPO15042 1029 aaKnown RBP9.23□□□□□ -0.93
SYNE1-208ENST00000367256 B4GALNT3Q6L9W6 998 aa9.23□□□□□ -0.93
SYNE1-208ENST00000367256 RSPH6AQ9H0K4 717 aa9.22□□□□□ -0.93
SYNE1-208ENST00000367256 NACADO15069 1562 aa9.22□□□□□ -0.93
SYNE1-208ENST00000367256 PRM3Q9NNZ6 103 aa9.22□□□□□ -0.93
SYNE1-208ENST00000367256 TPM4P67936 248 aa9.22□□□□□ -0.93
SYNE1-208ENST00000367256 HTATSF1O43719 755 aaKnown RBP9.22□□□□□ -0.93
SYNE1-208ENST00000367256 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.21□□□□□ -0.93
SYNE1-208ENST00000367256 GZF1Q9H116 711 aaPredicted RBP9.21□□□□□ -0.94
SYNE1-208ENST00000367256 KCNH8Q96L42 1107 aa9.21□□□□□ -0.94
SYNE1-208ENST00000367256 SETQ01105 290 aaPredicted RBP9.2□□□□□ -0.94
SYNE1-208ENST00000367256 KANK1Q14678 1352 aa9.19□□□□□ -0.94
SYNE1-208ENST00000367256 EIF4G1Q04637 1599 aaKnown RBP9.19□□□□□ -0.94
SYNE1-208ENST00000367256 PHLDB1Q86UU1 1377 aa9.18□□□□□ -0.94
SYNE1-208ENST00000367256 KTN1Q86UP2 1357 aaKnown RBP9.18□□□□□ -0.94
SYNE1-208ENST00000367256 CFDP1Q9UEE9 299 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-208ENST00000367256 BAZ1AQ9NRL2 1556 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-208ENST00000367256 HSP90B1P14625 803 aaKnown RBP9.18□□□□□ -0.94
SYNE1-208ENST00000367256 PDE4CQ08493 712 aa9.18□□□□□ -0.94
SYNE1-208ENST00000367256 PLEKHD1A6NEE1 506 aa9.18□□□□□ -0.94
SYNE1-208ENST00000367256 GOLGA6L3A6NEY3 463 aa9.17□□□□□ -0.94
SYNE1-208ENST00000367256 IPO9Q96P70 1041 aaKnown RBP9.17□□□□□ -0.94
SYNE1-208ENST00000367256 SETD5Q9C0A6 1442 aa9.17□□□□□ -0.94
SYNE1-208ENST00000367256 PHF14O94880 888 aa9.17□□□□□ -0.94
SYNE1-208ENST00000367256 GPATCH3Q96I76 525 aa9.17□□□□□ -0.94
SYNE1-208ENST00000367256 IPO8O15397 1037 aaKnown RBP9.17□□□□□ -0.94
SYNE1-208ENST00000367256 SLKQ9H2G2 1235 aaPredicted RBP9.17□□□□□ -0.94
SYNE1-208ENST00000367256 APBB1O00213 710 aa9.16□□□□□ -0.94
SYNE1-208ENST00000367256 VPS8Q8N3P4 1428 aa9.16□□□□□ -0.94
SYNE1-208ENST00000367256 CCDC34Q96HJ3 373 aa9.16□□□□□ -0.94
SYNE1-208ENST00000367256 ITPRIPQ8IWB1 547 aa9.16□□□□□ -0.94
SYNE1-208ENST00000367256 RALBP1Q15311 655 aa9.16□□□□□ -0.94
SYNE1-208ENST00000367256 ARHGAP35Q9NRY4 1499 aa9.16□□□□□ -0.94
SYNE1-208ENST00000367256 TMF1P82094 1093 aa9.15□□□□□ -0.94
SYNE1-208ENST00000367256 CALD1Q05682 793 aaKnown RBP9.15□□□□□ -0.94
SYNE1-208ENST00000367256 CSPP1Q1MSJ5 1256 aa9.15□□□□□ -0.94
SYNE1-208ENST00000367256 ROCK2O75116 1388 aaKnown RBP9.15□□□□□ -0.94
SYNE1-208ENST00000367256 CHMP4AQ9BY43 222 aa9.15□□□□□ -0.95
SYNE1-208ENST00000367256 BAZ1BQ9UIG0 1483 aaKnown RBP9.14□□□□□ -0.95
SYNE1-208ENST00000367256 RTF1Q92541 710 aaKnown RBP9.14□□□□□ -0.95
SYNE1-208ENST00000367256 PDE3BQ13370 1112 aa9.14□□□□□ -0.95
SYNE1-208ENST00000367256 RWDD1Q9H446 243 aaPredicted RBP9.14□□□□□ -0.95
SYNE1-208ENST00000367256 MORC1Q86VD1 984 aa9.14□□□□□ -0.95
SYNE1-208ENST00000367256 RASSF8Q8NHQ8 419 aa9.13□□□□□ -0.95
SYNE1-208ENST00000367256 DDX11L8A8MPP1 907 aa9.13□□□□□ -0.95
SYNE1-208ENST00000367256 EIF3AQ14152 1382 aaKnown RBP9.13□□□□□ -0.95
SYNE1-208ENST00000367256 TPM3P06753 285 aa9.13□□□□□ -0.95
SYNE1-208ENST00000367256 RCAN3Q9UKA8 241 aa9.12□□□□□ -0.95
SYNE1-208ENST00000367256 HSP90AA2PQ14568 343 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-208ENST00000367256 PMFBP1Q8TBY8 1022 aa9.11□□□□□ -0.95
SYNE1-208ENST00000367256 SRPK2P78362 688 aaKnown RBP9.11□□□□□ -0.95
SYNE1-208ENST00000367256 SOX12O15370 315 aa9.11□□□□□ -0.95
SYNE1-208ENST00000367256 MFAP1P55081 439 aaKnown RBP9.11□□□□□ -0.95
SYNE1-208ENST00000367256 CREBRFQ8IUR6 639 aa9.11□□□□□ -0.95
SYNE1-208ENST00000367256 TSHZ2Q9NRE2 1034 aa9.1□□□□□ -0.95
SYNE1-208ENST00000367256 CALRP27797 417 aaKnown RBP9.1□□□□□ -0.95
SYNE1-208ENST00000367256 SKOR2Q2VWA4 1001 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-208ENST00000367256 FANCIQ9NVI1 1328 aa9.09□□□□□ -0.95
SYNE1-208ENST00000367256 TRIM6-TRIM34B2RNG4 842 aa9.09□□□□□ -0.95
SYNE1-208ENST00000367256 CEP89Q96ST8 783 aa9.09□□□□□ -0.95
SYNE1-208ENST00000367256 ERCC6Q03468 1493 aa9.09□□□□□ -0.95
SYNE1-208ENST00000367256 HDAC5Q9UQL6 1122 aa9.08□□□□□ -0.96
SYNE1-208ENST00000367256 KIF16BQ96L93 1317 aa9.08□□□□□ -0.96
SYNE1-208ENST00000367256 GORABQ5T7V8 394 aa9.08□□□□□ -0.96
SYNE1-208ENST00000367256 DCAF11Q8TEB1 546 aa9.08□□□□□ -0.96
SYNE1-208ENST00000367256 PATL2C9JE40 543 aaKnown RBP9.07□□□□□ -0.96
SYNE1-208ENST00000367256 VPS53Q5VIR6 699 aa9.07□□□□□ -0.96
SYNE1-208ENST00000367256 CCDC70Q6NSX1 233 aa9.07□□□□□ -0.96
SYNE1-208ENST00000367256 NOL8Q76FK4 1167 aaKnown RBP9.07□□□□□ -0.96
SYNE1-208ENST00000367256 SPAG9O60271 1321 aaKnown RBP9.07□□□□□ -0.96
SYNE1-208ENST00000367256 TMX4Q9H1E5 349 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-208ENST00000367256 CHMP3Q9Y3E7 222 aa9.07□□□□□ -0.96
SYNE1-208ENST00000367256 ZNF330Q9Y3S2 320 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-208ENST00000367256 SIN3AQ96ST3 1273 aa9.07□□□□□ -0.96
SYNE1-208ENST00000367256 HMMRO75330 724 aa9.06□□□□□ -0.96
SYNE1-208ENST00000367256 ST18O60284 1047 aa9.06□□□□□ -0.96
SYNE1-208ENST00000367256 CHMP4CQ96CF2 233 aa9.06□□□□□ -0.96
SYNE1-208ENST00000367256 SAFB2Q14151 953 aaKnown RBP eCLIP9.06□□□□□ -0.96
SYNE1-208ENST00000367256 PES1O00541 588 aaKnown RBP9.06□□□□□ -0.96
SYNE1-208ENST00000367256 HDGFL2Q7Z4V5 671 aaPredicted RBP9.05□□□□□ -0.96
SYNE1-208ENST00000367256 CCAR2Q8N163 923 aaKnown RBP9.05□□□□□ -0.96
SYNE1-208ENST00000367256 FOXD4L1Q9NU39 408 aa9.05□□□□□ -0.96
SYNE1-208ENST00000367256 TSR1Q2NL82 804 aaKnown RBP9.05□□□□□ -0.96
SYNE1-208ENST00000367256 STK31Q9BXU1 1019 aa9.05□□□□□ -0.96
SYNE1-208ENST00000367256 KIF3AQ9Y496 699 aa9.05□□□□□ -0.96
SYNE1-208ENST00000367256 FMN1Q68DA7 1419 aa9.05□□□□□ -0.96
SYNE1-208ENST00000367256 GPS2Q13227 327 aa9.04□□□□□ -0.96
SYNE1-208ENST00000367256 TPD52L1Q16890 204 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-208ENST00000367256 MTERF4Q7Z6M4 381 aaKnown RBP9.04□□□□□ -0.96
SYNE1-208ENST00000367256 ZNF771Q7L3S4 317 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-208ENST00000367256 ATP6V1DQ9Y5K8 247 aa9.04□□□□□ -0.96
SYNE1-208ENST00000367256 TPM2P07951 284 aa9.04□□□□□ -0.96
SYNE1-208ENST00000367256 HOMEZQ8IX15 550 aa9.03□□□□□ -0.96
SYNE1-208ENST00000367256 ANO8Q9HCE9 1232 aaPredicted RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms