RNA–Protein interactions for RNA: ENST00000361311.4

CLSTN1-201, Transcript of calsyntenin 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLSTN1, Length 4,647 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1-201ENST00000361311 CDCA8Q53HL2 280 aa20.54■□□□□ 0.88
CLSTN1-201ENST00000361311 FTSJ3Q8IY81 847 aaKnown RBP20.54■□□□□ 0.88
CLSTN1-201ENST00000361311 TNNT2P45379 298 aaPredicted RBP20.52■□□□□ 0.88
CLSTN1-201ENST00000361311 PTMAP06454 111 aaKnown RBP20.51■□□□□ 0.87
CLSTN1-201ENST00000361311 GOLGA6L3A6NEY3 463 aa20.51■□□□□ 0.87
CLSTN1-201ENST00000361311 NLRP13Q86W25 1043 aa20.51■□□□□ 0.87
CLSTN1-201ENST00000361311 RRBP1Q9P2E9 1410 aaKnown RBP20.51■□□□□ 0.87
CLSTN1-201ENST00000361311 HSCBQ8IWL3 235 aa20.5■□□□□ 0.87
CLSTN1-201ENST00000361311 HSP90AB1P08238 724 aaKnown RBP20.5■□□□□ 0.87
CLSTN1-201ENST00000361311 MYH16Q9H6N6 1097 aa20.5■□□□□ 0.87
CLSTN1-201ENST00000361311 PKD2Q13563 968 aa20.49■□□□□ 0.87
CLSTN1-201ENST00000361311 DNTTIP2Q5QJE6 756 aaKnown RBP20.49■□□□□ 0.87
CLSTN1-201ENST00000361311 WASHC2AQ641Q2 1341 aa20.49■□□□□ 0.87
CLSTN1-201ENST00000361311 CCDC18Q5T9S5 1454 aa20.48■□□□□ 0.87
CLSTN1-201ENST00000361311 PLIN1O60240 522 aa20.48■□□□□ 0.87
CLSTN1-201ENST00000361311 TMF1P82094 1093 aa20.47■□□□□ 0.87
CLSTN1-201ENST00000361311 FAM161AQ3B820 660 aa20.47■□□□□ 0.87
CLSTN1-201ENST00000361311 SMARCA2P51531 1590 aa20.47■□□□□ 0.87
CLSTN1-201ENST00000361311 SLC24A1O60721 1099 aa20.46■□□□□ 0.87
CLSTN1-201ENST00000361311 NFKBIBQ15653 356 aa20.46■□□□□ 0.87
CLSTN1-201ENST00000361311 MSNP26038 577 aaKnown RBP20.45■□□□□ 0.86
CLSTN1-201ENST00000361311 HSP90AA2PQ14568 343 aaPredicted RBP20.45■□□□□ 0.86
CLSTN1-201ENST00000361311 FHOD3Q2V2M9 1422 aa20.45■□□□□ 0.86
CLSTN1-201ENST00000361311 BRPF3Q9ULD4 1205 aa20.45■□□□□ 0.86
CLSTN1-201ENST00000361311 CNTLNQ9NXG0 1405 aa20.45■□□□□ 0.86
CLSTN1-201ENST00000361311 ROCK2O75116 1388 aaKnown RBP20.44■□□□□ 0.86
CLSTN1-201ENST00000361311 CCDC7Q96M83 1385 aa20.44■□□□□ 0.86
CLSTN1-201ENST00000361311 VSIG10Q8N0Z9 540 aa20.44■□□□□ 0.86
CLSTN1-201ENST00000361311 ESF1Q9H501 851 aaKnown RBP20.43■□□□□ 0.86
CLSTN1-201ENST00000361311 PLEKHD1A6NEE1 506 aa20.43■□□□□ 0.86
CLSTN1-201ENST00000361311 CRBNQ96SW2 442 aa20.43■□□□□ 0.86
CLSTN1-201ENST00000361311 CENPQQ7L2Z9 268 aaPredicted RBP20.42■□□□□ 0.86
CLSTN1-201ENST00000361311 MYBBP1AQ9BQG0 1328 aaKnown RBP20.42■□□□□ 0.86
CLSTN1-201ENST00000361311 PHLDB1Q86UU1 1377 aa20.42■□□□□ 0.86
CLSTN1-201ENST00000361311 CFAP53Q96M91 514 aa20.42■□□□□ 0.86
CLSTN1-201ENST00000361311 SMARCA4P51532 1647 aa20.42■□□□□ 0.86
CLSTN1-201ENST00000361311 KIF15Q9NS87 1388 aa20.41■□□□□ 0.86
CLSTN1-201ENST00000361311 WDR97A6NE52 1622 aa20.39■□□□□ 0.86
CLSTN1-201ENST00000361311 GOLGA2Q08379 1002 aa20.38■□□□□ 0.85
CLSTN1-201ENST00000361311 KIF7Q2M1P5 1343 aa20.38■□□□□ 0.85
CLSTN1-201ENST00000361311 CCDC184Q52MB2 194 aa20.36■□□□□ 0.85
CLSTN1-201ENST00000361311 UACAQ9BZF9 1416 aa20.35■□□□□ 0.85
CLSTN1-201ENST00000361311 ARAP1Q96P48 1450 aa20.35■□□□□ 0.85
CLSTN1-201ENST00000361311 GBP4Q96PP9 640 aa20.35■□□□□ 0.85
CLSTN1-201ENST00000361311 AKNAQ7Z591 1439 aa20.35■□□□□ 0.85
CLSTN1-201ENST00000361311 PLPPR3Q6T4P5 718 aa20.34■□□□□ 0.85
CLSTN1-201ENST00000361311 ST20-MTHFSA0A0A6YYL1 179 aa20.33■□□□□ 0.84
CLSTN1-201ENST00000361311 USP47Q96K76 1375 aa20.31■□□□□ 0.84
CLSTN1-201ENST00000361311 RWDD1Q9H446 243 aaPredicted RBP20.31■□□□□ 0.84
CLSTN1-201ENST00000361311 LRRC9Q6ZRR7 1453 aa20.3■□□□□ 0.84
CLSTN1-201ENST00000361311 BACH2Q9BYV9 841 aa20.29■□□□□ 0.84
CLSTN1-201ENST00000361311 MFAP1P55081 439 aaKnown RBP20.28■□□□□ 0.84
CLSTN1-201ENST00000361311 PMFBP1Q8TBY8 1022 aa20.28■□□□□ 0.84
CLSTN1-201ENST00000361311 NUP155O75694 1391 aa20.26■□□□□ 0.83
CLSTN1-201ENST00000361311 ARID3AQ99856 593 aa20.26■□□□□ 0.83
CLSTN1-201ENST00000361311 TPRNQ4KMQ1 711 aa20.26■□□□□ 0.83
CLSTN1-201ENST00000361311 CASC1Q6TDU7 716 aa20.26■□□□□ 0.83
CLSTN1-201ENST00000361311 FGD6Q6ZV73 1430 aa20.26■□□□□ 0.83
CLSTN1-201ENST00000361311 PTMSP20962 102 aa20.25■□□□□ 0.83
CLSTN1-201ENST00000361311 MAPK8IP3Q9UPT6 1336 aa20.25■□□□□ 0.83
CLSTN1-201ENST00000361311 EIF4G1Q04637 1599 aaKnown RBP20.25■□□□□ 0.83
CLSTN1-201ENST00000361311 FRAT2O75474 233 aaPredicted RBP20.25■□□□□ 0.83
CLSTN1-201ENST00000361311 PLCB2Q00722 1185 aa20.25■□□□□ 0.83
CLSTN1-201ENST00000361311 PDS5BQ9NTI5 1447 aa20.25■□□□□ 0.83
CLSTN1-201ENST00000361311 CCDC146Q8IYE0 955 aa20.23■□□□□ 0.83
CLSTN1-201ENST00000361311 SMG6Q86US8 1419 aaKnown RBP20.22■□□□□ 0.83
CLSTN1-201ENST00000361311 CLUAP1Q96AJ1 413 aa20.2■□□□□ 0.82
CLSTN1-201ENST00000361311 STAG3Q9UJ98 1225 aa20.2■□□□□ 0.82
CLSTN1-201ENST00000361311 CENPJQ9HC77 1338 aaPredicted RBP20.2■□□□□ 0.82
CLSTN1-201ENST00000361311 CHMP4BQ9H444 224 aaKnown RBP20.2■□□□□ 0.82
CLSTN1-201ENST00000361311 DDX11L8A8MPP1 907 aa20.2■□□□□ 0.82
CLSTN1-201ENST00000361311 FAM43AQ8N2R8 423 aa20.2■□□□□ 0.82
CLSTN1-201ENST00000361311 ATAD2BQ9ULI0 1458 aa20.2■□□□□ 0.82
CLSTN1-201ENST00000361311 SYNJ1O43426 1573 aa20.18■□□□□ 0.82
CLSTN1-201ENST00000361311 U2SURPO15042 1029 aaKnown RBP20.18■□□□□ 0.82
CLSTN1-201ENST00000361311 ERICH3Q5RHP9 1530 aa20.17■□□□□ 0.82
CLSTN1-201ENST00000361311 PANK3Q9H999 370 aa20.17■□□□□ 0.82
CLSTN1-201ENST00000361311 ANKRD30AQ9BXX3 1397 aa20.16■□□□□ 0.82
CLSTN1-201ENST00000361311 MORC1Q86VD1 984 aa20.16■□□□□ 0.82
CLSTN1-201ENST00000361311 IGF1RP08069 1367 aa20.16■□□□□ 0.82
CLSTN1-201ENST00000361311 CDCA7LQ96GN5 454 aa20.16■□□□□ 0.82
CLSTN1-201ENST00000361311 CGNL1Q0VF96 1302 aa20.15■□□□□ 0.82
CLSTN1-201ENST00000361311 ZBTB7CA1YPR0 619 aa20.14■□□□□ 0.81
CLSTN1-201ENST00000361311 PNISRQ8TF01 805 aaKnown RBP20.14■□□□□ 0.81
CLSTN1-201ENST00000361311 ITPRIPQ8IWB1 547 aa20.13■□□□□ 0.81
CLSTN1-201ENST00000361311 COG6Q9Y2V7 657 aa20.13■□□□□ 0.81
CLSTN1-201ENST00000361311 CHAF1AQ13111 956 aaPredicted RBP20.13■□□□□ 0.81
CLSTN1-201ENST00000361311 BRD4O60885 1362 aaPredicted RBP20.13■□□□□ 0.81
CLSTN1-201ENST00000361311 FOXD4L1Q9NU39 408 aa20.12■□□□□ 0.81
CLSTN1-201ENST00000361311 PKNOX2Q96KN3 472 aa20.12■□□□□ 0.81
CLSTN1-201ENST00000361311 CADPSQ9ULU8 1353 aa20.12■□□□□ 0.81
CLSTN1-201ENST00000361311 CALD1Q05682 793 aaKnown RBP20.12■□□□□ 0.81
CLSTN1-201ENST00000361311 PRXQ9BXM0 1461 aa20.11■□□□□ 0.81
CLSTN1-201ENST00000361311 CDK11BP21127 795 aaKnown RBP20.11■□□□□ 0.81
CLSTN1-201ENST00000361311 MYOM3Q5VTT5 1437 aa20.11■□□□□ 0.81
CLSTN1-201ENST00000361311 CHMP5Q9NZZ3 219 aa20.1■□□□□ 0.81
CLSTN1-201ENST00000361311 TDRD9Q8NDG6 1382 aaKnown RBP20.09■□□□□ 0.81
CLSTN1-201ENST00000361311 SENP3Q9H4L4 574 aaPredicted RBP20.09■□□□□ 0.81
CLSTN1-201ENST00000361311 IPO8O15397 1037 aaKnown RBP20.08■□□□□ 0.81
CLSTN1-201ENST00000361311 NBPF8Q3BBV2 869 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms