RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 LAMC3Q9Y6N6 1575 aa16.64■□□□□ 0.25
CLIP3-201ENST00000360535 CCDC7Q96M83 1385 aa16.64■□□□□ 0.25
CLIP3-201ENST00000360535 ABCA5Q8WWZ7 1642 aa16.63■□□□□ 0.25
CLIP3-201ENST00000360535 CNTLNQ9NXG0 1405 aa16.63■□□□□ 0.25
CLIP3-201ENST00000360535 KIF7Q2M1P5 1343 aa16.62■□□□□ 0.25
CLIP3-201ENST00000360535 THOC2Q8NI27 1593 aaKnown RBP16.61■□□□□ 0.25
CLIP3-201ENST00000360535 KDM2AQ9Y2K7 1162 aa16.6■□□□□ 0.25
CLIP3-201ENST00000360535 PPP4R2Q9NY27 417 aa16.6■□□□□ 0.25
CLIP3-201ENST00000360535 CFDP1Q9UEE9 299 aaPredicted RBP16.6■□□□□ 0.25
CLIP3-201ENST00000360535 KIF21AQ7Z4S6 1674 aa16.58■□□□□ 0.25
CLIP3-201ENST00000360535 HECW1Q76N89 1606 aa16.57■□□□□ 0.24
CLIP3-201ENST00000360535 SALL2Q9Y467 1007 aaPredicted RBP16.57■□□□□ 0.24
CLIP3-201ENST00000360535 IQGAP2Q13576 1575 aa16.56■□□□□ 0.24
CLIP3-201ENST00000360535 ANKRD30BQ9BXX2 1392 aa16.56■□□□□ 0.24
CLIP3-201ENST00000360535 PKD2Q13563 968 aa16.55■□□□□ 0.24
CLIP3-201ENST00000360535 DAPK1P53355 1430 aa16.54■□□□□ 0.24
CLIP3-201ENST00000360535 TCOF1Q13428 1488 aaKnown RBP16.54■□□□□ 0.24
CLIP3-201ENST00000360535 NCOA1Q15788 1441 aa16.53■□□□□ 0.24
CLIP3-201ENST00000360535 ARHGEF11O15085 1522 aa16.53■□□□□ 0.24
CLIP3-201ENST00000360535 ABCC5O15440 1437 aa16.53■□□□□ 0.24
CLIP3-201ENST00000360535 MIA2Q96PC5 1412 aa16.52■□□□□ 0.24
CLIP3-201ENST00000360535 GCC2Q8IWJ2 1684 aa16.51■□□□□ 0.23
CLIP3-201ENST00000360535 ZBED9Q6R2W3 1325 aa16.51■□□□□ 0.23
CLIP3-201ENST00000360535 PRG4Q92954 1404 aaPredicted RBP16.51■□□□□ 0.23
CLIP3-201ENST00000360535 ZNF608Q9ULD9 1512 aaPredicted RBP16.5■□□□□ 0.23
CLIP3-201ENST00000360535 CHMP7Q8WUX9 453 aaPredicted RBP16.5■□□□□ 0.23
CLIP3-201ENST00000360535 TARBP1Q13395 1621 aaKnown RBP16.49■□□□□ 0.23
CLIP3-201ENST00000360535 TMC1Q8TDI8 760 aa16.49■□□□□ 0.23
CLIP3-201ENST00000360535 RPRD2Q5VT52 1461 aaKnown RBP16.48■□□□□ 0.23
CLIP3-201ENST00000360535 AKNAQ7Z591 1439 aa16.48■□□□□ 0.23
CLIP3-201ENST00000360535 WDR62O43379 1518 aa16.47■□□□□ 0.23
CLIP3-201ENST00000360535 CARD11Q9BXL7 1154 aa16.47■□□□□ 0.23
CLIP3-201ENST00000360535 USP47Q96K76 1375 aa16.46■□□□□ 0.23
CLIP3-201ENST00000360535 PBRM1Q86U86 1689 aa16.46■□□□□ 0.23
CLIP3-201ENST00000360535 CCDC136Q96JN2 1154 aa16.46■□□□□ 0.22
CLIP3-201ENST00000360535 FANCIQ9NVI1 1328 aa16.43■□□□□ 0.22
CLIP3-201ENST00000360535 TEX14Q8IWB6 1497 aa16.43■□□□□ 0.22
CLIP3-201ENST00000360535 DCAF11Q8TEB1 546 aa16.43■□□□□ 0.22
CLIP3-201ENST00000360535 RGL3Q3MIN7 710 aa16.43■□□□□ 0.22
CLIP3-201ENST00000360535 NUP153P49790 1475 aaKnown RBP16.42■□□□□ 0.22
CLIP3-201ENST00000360535 NBR1Q14596 966 aa16.42■□□□□ 0.22
CLIP3-201ENST00000360535 ADAMTS12P58397 1594 aa16.42■□□□□ 0.22
CLIP3-201ENST00000360535 NUP155O75694 1391 aa16.41■□□□□ 0.22
CLIP3-201ENST00000360535 ROCK1Q13464 1354 aa16.41■□□□□ 0.22
CLIP3-201ENST00000360535 ST20-MTHFSA0A0A6YYL1 179 aa16.41■□□□□ 0.22
CLIP3-201ENST00000360535 ERICH6BQ5W0A0 696 aa16.4■□□□□ 0.22
CLIP3-201ENST00000360535 PLB1Q6P1J6 1458 aa16.4■□□□□ 0.22
CLIP3-201ENST00000360535 HNRNPMP52272 730 aaKnown RBP eCLIP16.4■□□□□ 0.22
CLIP3-201ENST00000360535 SPATA31E1Q6ZUB1 1445 aa16.39■□□□□ 0.21
CLIP3-201ENST00000360535 PLEKHD1A6NEE1 506 aa16.39■□□□□ 0.21
CLIP3-201ENST00000360535 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.39■□□□□ 0.21
CLIP3-201ENST00000360535 NUDCQ9Y266 331 aa16.39■□□□□ 0.21
CLIP3-201ENST00000360535 TSPY4P0CV99 314 aa16.38■□□□□ 0.21
CLIP3-201ENST00000360535 TSPY10P0CW01 314 aa16.38■□□□□ 0.21
CLIP3-201ENST00000360535 DISP1Q96F81 1524 aa16.38■□□□□ 0.21
CLIP3-201ENST00000360535 CAMSAP2Q08AD1 1489 aa16.37■□□□□ 0.21
CLIP3-201ENST00000360535 PZPP20742 1482 aa16.37■□□□□ 0.21
CLIP3-201ENST00000360535 DNMT1P26358 1616 aaKnown RBP16.36■□□□□ 0.21
CLIP3-201ENST00000360535 MRC2Q9UBG0 1479 aa16.36■□□□□ 0.21
CLIP3-201ENST00000360535 ANKRD30AQ9BXX3 1397 aa16.36■□□□□ 0.21
CLIP3-201ENST00000360535 JPH4Q96JJ6 628 aa16.35■□□□□ 0.21
CLIP3-201ENST00000360535 KIAA0586Q9BVV6 1533 aa16.35■□□□□ 0.21
CLIP3-201ENST00000360535 DHX29Q7Z478 1369 aaKnown RBP16.35■□□□□ 0.21
CLIP3-201ENST00000360535 NPM2Q86SE8 214 aaKnown RBP16.35■□□□□ 0.21
CLIP3-201ENST00000360535 KIAA1107Q9UPP5 1409 aa16.35■□□□□ 0.21
CLIP3-201ENST00000360535 TROQ12816 1431 aaPredicted RBP16.34■□□□□ 0.21
CLIP3-201ENST00000360535 KIAA0556O60303 1618 aa16.34■□□□□ 0.21
CLIP3-201ENST00000360535 ANKRD50Q9ULJ7 1429 aa16.34■□□□□ 0.21
CLIP3-201ENST00000360535 PNISRQ8TF01 805 aaKnown RBP16.33■□□□□ 0.2
CLIP3-201ENST00000360535 RAPGEF6Q8TEU7 1601 aa16.33■□□□□ 0.2
CLIP3-201ENST00000360535 PAK3O75914 559 aaPredicted RBP16.32■□□□□ 0.2
CLIP3-201ENST00000360535 GPATCH8Q9UKJ3 1502 aaKnown RBP16.32■□□□□ 0.2
CLIP3-201ENST00000360535 BCORL1Q5H9F3 1711 aa16.31■□□□□ 0.2
CLIP3-201ENST00000360535 CC2D1BQ5T0F9 858 aaKnown RBP16.3■□□□□ 0.2
CLIP3-201ENST00000360535 KIF14Q15058 1648 aa16.3■□□□□ 0.2
CLIP3-201ENST00000360535 GRIN2AQ12879 1464 aa16.3■□□□□ 0.2
CLIP3-201ENST00000360535 NOP58Q9Y2X3 529 aaKnown RBP16.29■□□□□ 0.2
CLIP3-201ENST00000360535 SMG6Q86US8 1419 aaKnown RBP16.29■□□□□ 0.2
CLIP3-201ENST00000360535 IFT140Q96RY7 1462 aa16.27■□□□□ 0.2
CLIP3-201ENST00000360535 ROCK2O75116 1388 aaKnown RBP16.27■□□□□ 0.2
CLIP3-201ENST00000360535 NBPF1Q3BBV0 1214 aa16.27■□□□□ 0.19
CLIP3-201ENST00000360535 ANP32AP39687 249 aaKnown RBP16.26■□□□□ 0.19
CLIP3-201ENST00000360535 EXOC6Q8TAG9 804 aa16.26■□□□□ 0.19
CLIP3-201ENST00000360535 ERCC6Q03468 1493 aa16.26■□□□□ 0.19
CLIP3-201ENST00000360535 CDCA7LQ96GN5 454 aa16.24■□□□□ 0.19
CLIP3-201ENST00000360535 KIF15Q9NS87 1388 aa16.24■□□□□ 0.19
CLIP3-201ENST00000360535 C9orf84Q5VXU9 1444 aa16.23■□□□□ 0.19
CLIP3-201ENST00000360535 PLIN1O60240 522 aa16.23■□□□□ 0.19
CLIP3-201ENST00000360535 DEKP35659 375 aaKnown RBP16.23■□□□□ 0.19
CLIP3-201ENST00000360535 CARMIL2Q6F5E8 1435 aa16.23■□□□□ 0.19
CLIP3-201ENST00000360535 MYBBP1AQ9BQG0 1328 aaKnown RBP16.22■□□□□ 0.19
CLIP3-201ENST00000360535 RCAN3Q9UKA8 241 aa16.21■□□□□ 0.19
CLIP3-201ENST00000360535 SKAP1Q86WV1 359 aa16.21■□□□□ 0.18
CLIP3-201ENST00000360535 ZBTB47Q9UFB7 747 aaPredicted RBP16.21■□□□□ 0.18
CLIP3-201ENST00000360535 EIF4G3O43432 1585 aaKnown RBP16.19■□□□□ 0.18
CLIP3-201ENST00000360535 RRP1P56182 461 aaKnown RBP16.19■□□□□ 0.18
CLIP3-201ENST00000360535 RALBP1Q15311 655 aa16.19■□□□□ 0.18
CLIP3-201ENST00000360535 MBD5Q9P267 1494 aa16.19■□□□□ 0.18
CLIP3-201ENST00000360535 KDM5CP41229 1560 aa16.18■□□□□ 0.18
CLIP3-201ENST00000360535 POLR1AO95602 1720 aaPredicted RBP16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms