RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 SIGLEC1Q9BZZ2 1709 aa18.93■□□□□ 0.62
RTN3-204ENST00000354497 ZMYM4Q5VZL5 1548 aa18.93■□□□□ 0.62
RTN3-204ENST00000354497 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.93■□□□□ 0.621e-77■■□□□ 12.1
RTN3-204ENST00000354497 FER1L4A9Z1Z3 1794 aa18.92■□□□□ 0.62
RTN3-204ENST00000354497 CSRNP3Q8WYN3 585 aa18.91■□□□□ 0.62
RTN3-204ENST00000354497 TTC37Q6PGP7 1564 aa18.91■□□□□ 0.62
RTN3-204ENST00000354497 HECW1Q76N89 1606 aa18.89■□□□□ 0.61
RTN3-204ENST00000354497 MAGI2Q86UL8 1455 aa18.88■□□□□ 0.61
RTN3-204ENST00000354497 ILDR2Q71H61 639 aa18.87■□□□□ 0.61
RTN3-204ENST00000354497 SCAPERQ9BY12 1400 aa18.86■□□□□ 0.61
RTN3-204ENST00000354497 CEBPAP49715 358 aaPredicted RBP18.85■□□□□ 0.61
RTN3-204ENST00000354497 PREX1Q8TCU6 1659 aa18.83■□□□□ 0.61
RTN3-204ENST00000354497 CDK13Q14004 1512 aaKnown RBP18.82■□□□□ 0.6
RTN3-204ENST00000354497 SOCS7O14512 581 aa18.82■□□□□ 0.6
RTN3-204ENST00000354497 ARHGEF12Q9NZN5 1544 aa18.81■□□□□ 0.6
RTN3-204ENST00000354497 C9orf84Q5VXU9 1444 aa18.81■□□□□ 0.6
RTN3-204ENST00000354497 ATP10AO60312 1499 aa18.81■□□□□ 0.6
RTN3-204ENST00000354497 MYT1LQ9UL68 1186 aa18.81■□□□□ 0.6
RTN3-204ENST00000354497 ATP1B4Q9UN42 357 aaPredicted RBP18.81■□□□□ 0.6
RTN3-204ENST00000354497 DMRT2Q9Y5R5 561 aa18.8■□□□□ 0.6
RTN3-204ENST00000354497 PLCH2O75038 1416 aa18.79■□□□□ 0.6
RTN3-204ENST00000354497 UHRF1BP1Q6BDS2 1440 aa18.77■□□□□ 0.6
RTN3-204ENST00000354497 EFCAB2Q5VUJ9 269 aa18.75■□□□□ 0.59
RTN3-204ENST00000354497 SPATA31D1Q6ZQQ2 1576 aa18.75■□□□□ 0.59
RTN3-204ENST00000354497 STRCQ7RTU9 1775 aa18.73■□□□□ 0.59
RTN3-204ENST00000354497 MYO5CQ9NQX4 1742 aa18.72■□□□□ 0.59
RTN3-204ENST00000354497 EEA1Q15075 1411 aa18.7■□□□□ 0.58
RTN3-204ENST00000354497 EHMT2Q96KQ7 1210 aa18.7■□□□□ 0.58
RTN3-204ENST00000354497 ZNF518AQ6AHZ1 1483 aa18.69■□□□□ 0.58
RTN3-204ENST00000354497 AFAP1Q8N556 730 aa18.69■□□□□ 0.58
RTN3-204ENST00000354497 ESF1Q9H501 851 aaKnown RBP18.69■□□□□ 0.58
RTN3-204ENST00000354497 ARHGAP5Q13017 1502 aa18.69■□□□□ 0.58
RTN3-204ENST00000354497 CDK11AQ9UQ88 783 aaPredicted RBP18.66■□□□□ 0.58
RTN3-204ENST00000354497 PTPRTO14522 1441 aa18.66■□□□□ 0.58
RTN3-204ENST00000354497 KIF14Q15058 1648 aa18.66■□□□□ 0.58
RTN3-204ENST00000354497 DIP2CQ9Y2E4 1556 aa18.65■□□□□ 0.58
RTN3-204ENST00000354497 KDM5CP41229 1560 aa18.63■□□□□ 0.57
RTN3-204ENST00000354497 C3P01024 1663 aa18.63■□□□□ 0.57
RTN3-204ENST00000354497 CLIP1P30622 1438 aa18.61■□□□□ 0.57
RTN3-204ENST00000354497 FMN1Q68DA7 1419 aa18.61■□□□□ 0.57
RTN3-204ENST00000354497 ABCA6Q8N139 1617 aa18.6■□□□□ 0.57
RTN3-204ENST00000354497 LTBP4Q8N2S1 1624 aa18.6■□□□□ 0.57
RTN3-204ENST00000354497 UBTFP17480 764 aaKnown RBP18.59■□□□□ 0.57
RTN3-204ENST00000354497 TROQ12816 1431 aaPredicted RBP18.59■□□□□ 0.57
RTN3-204ENST00000354497 TRAPPC8Q9Y2L5 1435 aa18.58■□□□□ 0.57
RTN3-204ENST00000354497 REREQ9P2R6 1566 aa18.58■□□□□ 0.56
RTN3-204ENST00000354497 NCOA1Q15788 1441 aa18.56■□□□□ 0.56
RTN3-204ENST00000354497 SETD1BQ9UPS6 1966 aaKnown RBP18.56■□□□□ 0.56
RTN3-204ENST00000354497 IQSEC2Q5JU85 1478 aa18.55■□□□□ 0.56
RTN3-204ENST00000354497 MLH3Q9UHC1 1453 aa18.55■□□□□ 0.56
RTN3-204ENST00000354497 CAMSAP1Q5T5Y3 1602 aa18.53■□□□□ 0.56
RTN3-204ENST00000354497 ARHGAP35Q9NRY4 1499 aa18.53■□□□□ 0.56
RTN3-204ENST00000354497 UBAP1LF5GYI3 381 aa18.53■□□□□ 0.56
RTN3-204ENST00000354497 AGLP35573 1532 aa18.53■□□□□ 0.56
RTN3-204ENST00000354497 CNTLNQ9NXG0 1405 aa18.52■□□□□ 0.56
RTN3-204ENST00000354497 NCKAP5LQ9HCH0 1330 aa18.52■□□□□ 0.56
RTN3-204ENST00000354497 ABCC1P33527 1531 aa18.51■□□□□ 0.55
RTN3-204ENST00000354497 CDC42BPBQ9Y5S2 1711 aa18.51■□□□□ 0.55
RTN3-204ENST00000354497 ITSN2Q9NZM3 1697 aa18.5■□□□□ 0.55
RTN3-204ENST00000354497 ZNF335Q9H4Z2 1342 aaPredicted RBP18.49■□□□□ 0.55
RTN3-204ENST00000354497 PREX2Q70Z35 1606 aa18.49■□□□□ 0.55
RTN3-204ENST00000354497 LRRIQ1Q96JM4 1722 aa18.47■□□□□ 0.55
RTN3-204ENST00000354497 ZNF777Q9ULD5 760 aaPredicted RBP18.47■□□□□ 0.55
RTN3-204ENST00000354497 KIDINS220Q9ULH0 1771 aa18.46■□□□□ 0.55
RTN3-204ENST00000354497 NPATQ14207 1427 aa18.45■□□□□ 0.54
RTN3-204ENST00000354497 ZMYM3Q14202 1370 aa18.44■□□□□ 0.54
RTN3-204ENST00000354497 SCAF1Q9H7N4 1312 aaKnown RBP18.44■□□□□ 0.54
RTN3-204ENST00000354497 MROH2AA6NES4 1674 aa18.43■□□□□ 0.54
RTN3-204ENST00000354497 SUPT6HQ7KZ85 1726 aaKnown RBP18.41■□□□□ 0.54
RTN3-204ENST00000354497 SPAG9O60271 1321 aaKnown RBP18.41■□□□□ 0.54
RTN3-204ENST00000354497 SAMD9LQ8IVG5 1584 aa18.4■□□□□ 0.54
RTN3-204ENST00000354497 MYO3AQ8NEV4 1616 aa18.4■□□□□ 0.54
RTN3-204ENST00000354497 CCDC18Q5T9S5 1454 aa18.4■□□□□ 0.54
RTN3-204ENST00000354497 PKD2Q13563 968 aa18.4■□□□□ 0.54
RTN3-204ENST00000354497 CLTCQ00610 1675 aaKnown RBP18.4■□□□□ 0.54
RTN3-204ENST00000354497 SYCP2Q9BX26 1530 aa18.38■□□□□ 0.53
RTN3-204ENST00000354497 CDC42BPAQ5VT25 1732 aa18.38■□□□□ 0.53
RTN3-204ENST00000354497 PIP4K2BP78356 416 aa18.38■□□□□ 0.53
RTN3-204ENST00000354497 HNRNPMP52272 730 aaKnown RBP eCLIP18.37■□□□□ 0.53
RTN3-204ENST00000354497 GGT6Q6P531 493 aa18.37■□□□□ 0.53
RTN3-204ENST00000354497 CEP170BQ9Y4F5 1589 aaPredicted RBP18.37■□□□□ 0.53
RTN3-204ENST00000354497 PLA2R1Q13018 1463 aa18.36■□□□□ 0.53
RTN3-204ENST00000354497 ZNF142P52746 1687 aaPredicted RBP18.35■□□□□ 0.53
RTN3-204ENST00000354497 CASKIN1Q8WXD9 1431 aa18.35■□□□□ 0.53
RTN3-204ENST00000354497 ATP7AQ04656 1500 aa18.34■□□□□ 0.53
RTN3-204ENST00000354497 TCOF1Q13428 1488 aaKnown RBP18.34■□□□□ 0.53
RTN3-204ENST00000354497 HSPA1LP34931 641 aa18.33■□□□□ 0.53
RTN3-204ENST00000354497 PTPRKQ15262 1439 aa18.33■□□□□ 0.53
RTN3-204ENST00000354497 A2MP01023 1474 aa18.33■□□□□ 0.52
RTN3-204ENST00000354497 MED1Q15648 1581 aaPredicted RBP18.32■□□□□ 0.52
RTN3-204ENST00000354497 GPATCH8Q9UKJ3 1502 aaKnown RBP18.29■□□□□ 0.52
RTN3-204ENST00000354497 PLXNC1O60486 1568 aa18.29■□□□□ 0.52
RTN3-204ENST00000354497 INO80Q9ULG1 1556 aaPredicted RBP18.28■□□□□ 0.52
RTN3-204ENST00000354497 TOM1O60784 492 aa18.28■□□□□ 0.52
RTN3-204ENST00000354497 CFDP1Q9UEE9 299 aaPredicted RBP18.28■□□□□ 0.52
RTN3-204ENST00000354497 A2ML1A8K2U0 1454 aa18.27■□□□□ 0.51
RTN3-204ENST00000354497 PLEKHH2Q8IVE3 1493 aa18.26■□□□□ 0.51
RTN3-204ENST00000354497 FYCO1Q9BQS8 1478 aa18.26■□□□□ 0.51
RTN3-204ENST00000354497 CCNB3Q8WWL7 1395 aa18.25■□□□□ 0.51
RTN3-204ENST00000354497 DNMT1P26358 1616 aaKnown RBP18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms