RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 CARMIL2Q6F5E8 1435 aa31.37■■■□□ 2.61
UPF3A-201ENST00000351487 TRIM52Q96A61 297 aa31.37■■■□□ 2.61
UPF3A-201ENST00000351487 KCNH8Q96L42 1107 aa31.36■■■□□ 2.61
UPF3A-201ENST00000351487 HIRIP3Q9BW71 556 aaPredicted RBP31.36■■■□□ 2.61
UPF3A-201ENST00000351487 MPHOSPH9Q99550 1183 aa31.35■■■□□ 2.61
UPF3A-201ENST00000351487 PRG4Q92954 1404 aaPredicted RBP31.34■■■□□ 2.61
UPF3A-201ENST00000351487 CAMSAP2Q08AD1 1489 aa31.32■■■□□ 2.6
UPF3A-201ENST00000351487 ADGBQ8N7X0 1667 aa31.31■■■□□ 2.6
UPF3A-201ENST00000351487 KIF14Q15058 1648 aa31.3■■■□□ 2.6
UPF3A-201ENST00000351487 CCER2I3L3R5 266 aa31.3■■■□□ 2.6
UPF3A-201ENST00000351487 CROCC2H7BZ55 1655 aa31.29■■■□□ 2.6
UPF3A-201ENST00000351487 ZNF644Q9H582 1327 aaPredicted RBP31.29■■■□□ 2.6
UPF3A-201ENST00000351487 GPATCH8Q9UKJ3 1502 aaKnown RBP31.28■■■□□ 2.6
UPF3A-201ENST00000351487 ABCA8O94911 1581 aa31.27■■■□□ 2.6
UPF3A-201ENST00000351487 JPH4Q96JJ6 628 aa31.26■■■□□ 2.59
UPF3A-201ENST00000351487 ANP32CO43423 234 aa31.24■■■□□ 2.59
UPF3A-201ENST00000351487 ANKRD30BQ9BXX2 1392 aa31.23■■■□□ 2.59
UPF3A-201ENST00000351487 RPRD2Q5VT52 1461 aaKnown RBP31.23■■■□□ 2.59
UPF3A-201ENST00000351487 ADGRL2O95490 1459 aa31.23■■■□□ 2.59
UPF3A-201ENST00000351487 FBLN2P98095 1184 aa31.21■■■□□ 2.59
UPF3A-201ENST00000351487 CFDP1Q9UEE9 299 aaPredicted RBP31.18■■■□□ 2.58
UPF3A-201ENST00000351487 SUPT16HQ9Y5B9 1047 aaKnown RBP31.18■■■□□ 2.58
UPF3A-201ENST00000351487 NCOA1Q15788 1441 aa31.17■■■□□ 2.58
UPF3A-201ENST00000351487 TEX14Q8IWB6 1497 aa31.17■■■□□ 2.58
UPF3A-201ENST00000351487 CDC42BPAQ5VT25 1732 aa31.16■■■□□ 2.58
UPF3A-201ENST00000351487 PZPP20742 1482 aa31.13■■■□□ 2.57
UPF3A-201ENST00000351487 L3MBTL2Q969R5 705 aa31.13■■■□□ 2.57
UPF3A-201ENST00000351487 ABCC10Q5T3U5 1492 aa31.12■■■□□ 2.57
UPF3A-201ENST00000351487 FOXD1Q16676 465 aa31.11■■■□□ 2.57
UPF3A-201ENST00000351487 HSPA5P11021 654 aaKnown RBP31.1■■■□□ 2.57
UPF3A-201ENST00000351487 ATP10BO94823 1461 aa31.1■■■□□ 2.57
UPF3A-201ENST00000351487 EIF4G2P78344 907 aaKnown RBP eCLIP31.08■■■□□ 2.57
UPF3A-201ENST00000351487 SHANK2Q9UPX8 1470 aa31.07■■■□□ 2.56
UPF3A-201ENST00000351487 SLC4A1APQ9BWU0 796 aaKnown RBP31.07■■■□□ 2.56
UPF3A-201ENST00000351487 WASHC2AQ641Q2 1341 aa31.05■■■□□ 2.56
UPF3A-201ENST00000351487 ANKRD30AQ9BXX3 1397 aa31.04■■■□□ 2.56
UPF3A-201ENST00000351487 PLEKHD1A6NEE1 506 aa31.02■■■□□ 2.56
UPF3A-201ENST00000351487 POLR1AO95602 1720 aaPredicted RBP31■■■□□ 2.55
UPF3A-201ENST00000351487 KIAA1107Q9UPP5 1409 aa30.98■■■□□ 2.55
UPF3A-201ENST00000351487 ZNF777Q9ULD5 760 aaPredicted RBP30.98■■■□□ 2.55
UPF3A-201ENST00000351487 ANKRD50Q9ULJ7 1429 aa30.96■■■□□ 2.55
UPF3A-201ENST00000351487 MBD5Q9P267 1494 aa30.95■■■□□ 2.54
UPF3A-201ENST00000351487 CNTLNQ9NXG0 1405 aa30.95■■■□□ 2.54
UPF3A-201ENST00000351487 ARHGEF5Q12774 1597 aa30.94■■■□□ 2.54
UPF3A-201ENST00000351487 NBPF8Q3BBV2 869 aa30.94■■■□□ 2.54
UPF3A-201ENST00000351487 C9orf84Q5VXU9 1444 aa30.93■■■□□ 2.54
UPF3A-201ENST00000351487 CHD1O14646 1710 aa30.93■■■□□ 2.54
UPF3A-201ENST00000351487 SPATA31E1Q6ZUB1 1445 aa30.93■■■□□ 2.54
UPF3A-201ENST00000351487 PTPRGP23470 1445 aa30.91■■■□□ 2.54
UPF3A-201ENST00000351487 KDM5DQ9BY66 1539 aa30.91■■■□□ 2.54
UPF3A-201ENST00000351487 CCDC7Q96M83 1385 aa30.9■■■□□ 2.54
UPF3A-201ENST00000351487 SHROOM2Q13796 1616 aa30.89■■■□□ 2.54
UPF3A-201ENST00000351487 PREX2Q70Z35 1606 aa30.87■■■□□ 2.53
UPF3A-201ENST00000351487 CDC42BPBQ9Y5S2 1711 aa30.84■■■□□ 2.53
UPF3A-201ENST00000351487 SAMD9LQ8IVG5 1584 aa30.81■■■□□ 2.52
UPF3A-201ENST00000351487 C11orf95C9JLR9 678 aaPredicted RBP30.81■■■□□ 2.52
UPF3A-201ENST00000351487 PKD2Q13563 968 aa30.81■■■□□ 2.52
UPF3A-201ENST00000351487 CCDC141Q6ZP82 1450 aa30.77■■■□□ 2.52
UPF3A-201ENST00000351487 TSPY4P0CV99 314 aa30.76■■■□□ 2.51
UPF3A-201ENST00000351487 TSPY10P0CW01 314 aa30.76■■■□□ 2.51
UPF3A-201ENST00000351487 KIF15Q9NS87 1388 aa30.75■■■□□ 2.51
UPF3A-201ENST00000351487 NUP155O75694 1391 aa30.74■■■□□ 2.51
UPF3A-201ENST00000351487 ARHGEF12Q9NZN5 1544 aa30.74■■■□□ 2.51
UPF3A-201ENST00000351487 UHRF1BP1Q6BDS2 1440 aa30.73■■■□□ 2.51
UPF3A-201ENST00000351487 KIF7Q2M1P5 1343 aa30.72■■■□□ 2.51
UPF3A-201ENST00000351487 KDM5CP41229 1560 aa30.7■■■□□ 2.51
UPF3A-201ENST00000351487 MAST1Q9Y2H9 1570 aa30.7■■■□□ 2.5
UPF3A-201ENST00000351487 FKBP8Q14318 412 aa30.69■■■□□ 2.5
UPF3A-201ENST00000351487 TTC37Q6PGP7 1564 aa30.69■■■□□ 2.5
UPF3A-201ENST00000351487 ABCC2Q92887 1545 aa30.68■■■□□ 2.5
UPF3A-201ENST00000351487 HNRNPMP52272 730 aaKnown RBP eCLIP30.67■■■□□ 2.53e-6■■■■□ 21.2
UPF3A-201ENST00000351487 RSPH4AQ5TD94 716 aa30.67■■■□□ 2.5
UPF3A-201ENST00000351487 PRKRIP1Q9H875 184 aaPredicted RBP30.67■■■□□ 2.5
UPF3A-201ENST00000351487 RALGAPBQ86X10 1494 aa30.67■■■□□ 2.5
UPF3A-201ENST00000351487 BCORL1Q5H9F3 1711 aa30.65■■■□□ 2.5
UPF3A-201ENST00000351487 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.65■■■□□ 2.5
UPF3A-201ENST00000351487 NEFLP07196 543 aa30.65■■■□□ 2.5
UPF3A-201ENST00000351487 USP47Q96K76 1375 aa30.64■■■□□ 2.5
UPF3A-201ENST00000351487 SYCP2Q9BX26 1530 aa30.63■■■□□ 2.49
UPF3A-201ENST00000351487 MYO5CQ9NQX4 1742 aa30.63■■■□□ 2.49
UPF3A-201ENST00000351487 HNRNPUQ00839 825 aaKnown RBP eCLIP30.62■■■□□ 2.49
UPF3A-201ENST00000351487 FAM135AQ9P2D6 1515 aa30.61■■■□□ 2.49
UPF3A-201ENST00000351487 ERCC6L2Q5T890 1561 aa30.6■■■□□ 2.49
UPF3A-201ENST00000351487 UNC13BO14795 1591 aa30.6■■■□□ 2.49
UPF3A-201ENST00000351487 ARHGAP5Q13017 1502 aa30.59■■■□□ 2.49
UPF3A-201ENST00000351487 PLXNC1O60486 1568 aa30.58■■■□□ 2.49
UPF3A-201ENST00000351487 ARID4BQ4LE39 1312 aaPredicted RBP30.57■■■□□ 2.48
UPF3A-201ENST00000351487 PLEKHH2Q8IVE3 1493 aa30.56■■■□□ 2.48
UPF3A-201ENST00000351487 CCDC184Q52MB2 194 aa30.54■■■□□ 2.48
UPF3A-201ENST00000351487 BCANQ96GW7 911 aa30.53■■■□□ 2.48
UPF3A-201ENST00000351487 DHX29Q7Z478 1369 aaKnown RBP30.51■■■□□ 2.47
UPF3A-201ENST00000351487 CLASP1Q7Z460 1538 aa30.51■■■□□ 2.47
UPF3A-201ENST00000351487 ZNF326Q5BKZ1 582 aaKnown RBP30.51■■■□□ 2.47
UPF3A-201ENST00000351487 TSHZ2Q9NRE2 1034 aa30.51■■■□□ 2.47
UPF3A-201ENST00000351487 IQGAP3Q86VI3 1631 aa30.47■■■□□ 2.47
UPF3A-201ENST00000351487 MRS2Q9HD23 443 aa30.47■■■□□ 2.47
UPF3A-201ENST00000351487 ZCCHC11Q5TAX3 1644 aaKnown RBP30.47■■■□□ 2.47
UPF3A-201ENST00000351487 UHRF1BP1LA0JNW5 1464 aa30.46■■■□□ 2.47
UPF3A-201ENST00000351487 ROCK2O75116 1388 aaKnown RBP30.45■■■□□ 2.46
UPF3A-201ENST00000351487 DUOX2Q9NRD8 1548 aa30.42■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms