RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3A, Length 2,235 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 CARMIL2Q6F5E8 1435 aa31.37■■■□□ 2.61
UPF3A-201ENST00000351487 TRIM52Q96A61 297 aa31.37■■■□□ 2.61
UPF3A-201ENST00000351487 KCNH8Q96L42 1107 aa31.36■■■□□ 2.61
UPF3A-201ENST00000351487 HIRIP3Q9BW71 556 aaPredicted RBP31.36■■■□□ 2.61
UPF3A-201ENST00000351487 MPHOSPH9Q99550 1183 aa31.35■■■□□ 2.61
UPF3A-201ENST00000351487 PRG4Q92954 1404 aaPredicted RBP31.34■■■□□ 2.61
UPF3A-201ENST00000351487 CAMSAP2Q08AD1 1489 aa31.32■■■□□ 2.6
UPF3A-201ENST00000351487 ADGBQ8N7X0 1667 aa31.31■■■□□ 2.6
UPF3A-201ENST00000351487 KIF14Q15058 1648 aa31.3■■■□□ 2.6
UPF3A-201ENST00000351487 CCER2I3L3R5 266 aa31.3■■■□□ 2.6
UPF3A-201ENST00000351487 CROCC2H7BZ55 1655 aa31.29■■■□□ 2.6
UPF3A-201ENST00000351487 ZNF644Q9H582 1327 aaPredicted RBP31.29■■■□□ 2.6
UPF3A-201ENST00000351487 GPATCH8Q9UKJ3 1502 aaKnown RBP31.28■■■□□ 2.6
UPF3A-201ENST00000351487 ABCA8O94911 1581 aa31.27■■■□□ 2.6
UPF3A-201ENST00000351487 JPH4Q96JJ6 628 aa31.26■■■□□ 2.59
UPF3A-201ENST00000351487 ANP32CO43423 234 aa31.24■■■□□ 2.59
UPF3A-201ENST00000351487 ANKRD30BQ9BXX2 1392 aa31.23■■■□□ 2.59
UPF3A-201ENST00000351487 RPRD2Q5VT52 1461 aaKnown RBP31.23■■■□□ 2.59
UPF3A-201ENST00000351487 ADGRL2O95490 1459 aa31.23■■■□□ 2.59
UPF3A-201ENST00000351487 FBLN2P98095 1184 aa31.21■■■□□ 2.59
UPF3A-201ENST00000351487 CFDP1Q9UEE9 299 aaPredicted RBP31.18■■■□□ 2.58
UPF3A-201ENST00000351487 SUPT16HQ9Y5B9 1047 aaKnown RBP31.18■■■□□ 2.58
UPF3A-201ENST00000351487 NCOA1Q15788 1441 aa31.17■■■□□ 2.58
UPF3A-201ENST00000351487 TEX14Q8IWB6 1497 aa31.17■■■□□ 2.58
UPF3A-201ENST00000351487 CDC42BPAQ5VT25 1732 aa31.16■■■□□ 2.58
UPF3A-201ENST00000351487 PZPP20742 1482 aa31.13■■■□□ 2.57
UPF3A-201ENST00000351487 L3MBTL2Q969R5 705 aa31.13■■■□□ 2.57
UPF3A-201ENST00000351487 ABCC10Q5T3U5 1492 aa31.12■■■□□ 2.57
UPF3A-201ENST00000351487 FOXD1Q16676 465 aa31.11■■■□□ 2.57
UPF3A-201ENST00000351487 HSPA5P11021 654 aaKnown RBP31.1■■■□□ 2.57
UPF3A-201ENST00000351487 ATP10BO94823 1461 aa31.1■■■□□ 2.57
UPF3A-201ENST00000351487 EIF4G2P78344 907 aaKnown RBP eCLIP31.08■■■□□ 2.57
UPF3A-201ENST00000351487 SHANK2Q9UPX8 1470 aa31.07■■■□□ 2.56
UPF3A-201ENST00000351487 SLC4A1APQ9BWU0 796 aaKnown RBP31.07■■■□□ 2.56
UPF3A-201ENST00000351487 WASHC2AQ641Q2 1341 aa31.05■■■□□ 2.56
UPF3A-201ENST00000351487 ANKRD30AQ9BXX3 1397 aa31.04■■■□□ 2.56
UPF3A-201ENST00000351487 PLEKHD1A6NEE1 506 aa31.02■■■□□ 2.56
UPF3A-201ENST00000351487 POLR1AO95602 1720 aaPredicted RBP31■■■□□ 2.55
UPF3A-201ENST00000351487 KIAA1107Q9UPP5 1409 aa30.98■■■□□ 2.55
UPF3A-201ENST00000351487 ZNF777Q9ULD5 760 aaPredicted RBP30.98■■■□□ 2.55
UPF3A-201ENST00000351487 ANKRD50Q9ULJ7 1429 aa30.96■■■□□ 2.55
UPF3A-201ENST00000351487 MBD5Q9P267 1494 aa30.95■■■□□ 2.54
UPF3A-201ENST00000351487 CNTLNQ9NXG0 1405 aa30.95■■■□□ 2.54
UPF3A-201ENST00000351487 ARHGEF5Q12774 1597 aa30.94■■■□□ 2.54
UPF3A-201ENST00000351487 NBPF8Q3BBV2 869 aa30.94■■■□□ 2.54
UPF3A-201ENST00000351487 C9orf84Q5VXU9 1444 aa30.93■■■□□ 2.54
UPF3A-201ENST00000351487 CHD1O14646 1710 aa30.93■■■□□ 2.54
UPF3A-201ENST00000351487 SPATA31E1Q6ZUB1 1445 aa30.93■■■□□ 2.54
UPF3A-201ENST00000351487 PTPRGP23470 1445 aa30.91■■■□□ 2.54
UPF3A-201ENST00000351487 KDM5DQ9BY66 1539 aa30.91■■■□□ 2.54
UPF3A-201ENST00000351487 CCDC7Q96M83 1385 aa30.9■■■□□ 2.54
UPF3A-201ENST00000351487 SHROOM2Q13796 1616 aa30.89■■■□□ 2.54
UPF3A-201ENST00000351487 PREX2Q70Z35 1606 aa30.87■■■□□ 2.53
UPF3A-201ENST00000351487 CDC42BPBQ9Y5S2 1711 aa30.84■■■□□ 2.53
UPF3A-201ENST00000351487 SAMD9LQ8IVG5 1584 aa30.81■■■□□ 2.52
UPF3A-201ENST00000351487 C11orf95C9JLR9 678 aaPredicted RBP30.81■■■□□ 2.52
UPF3A-201ENST00000351487 PKD2Q13563 968 aa30.81■■■□□ 2.52
UPF3A-201ENST00000351487 CCDC141Q6ZP82 1450 aa30.77■■■□□ 2.52
UPF3A-201ENST00000351487 TSPY4P0CV99 314 aa30.76■■■□□ 2.51
UPF3A-201ENST00000351487 TSPY10P0CW01 314 aa30.76■■■□□ 2.51
UPF3A-201ENST00000351487 KIF15Q9NS87 1388 aa30.75■■■□□ 2.51
UPF3A-201ENST00000351487 NUP155O75694 1391 aa30.74■■■□□ 2.51
UPF3A-201ENST00000351487 ARHGEF12Q9NZN5 1544 aa30.74■■■□□ 2.51
UPF3A-201ENST00000351487 UHRF1BP1Q6BDS2 1440 aa30.73■■■□□ 2.51
UPF3A-201ENST00000351487 KIF7Q2M1P5 1343 aa30.72■■■□□ 2.51
UPF3A-201ENST00000351487 KDM5CP41229 1560 aa30.7■■■□□ 2.51
UPF3A-201ENST00000351487 MAST1Q9Y2H9 1570 aa30.7■■■□□ 2.5
UPF3A-201ENST00000351487 FKBP8Q14318 412 aa30.69■■■□□ 2.5
UPF3A-201ENST00000351487 TTC37Q6PGP7 1564 aa30.69■■■□□ 2.5
UPF3A-201ENST00000351487 ABCC2Q92887 1545 aa30.68■■■□□ 2.5
UPF3A-201ENST00000351487 HNRNPMP52272 730 aaKnown RBP eCLIP30.67■■■□□ 2.53e-6■■■■□ 21.2
UPF3A-201ENST00000351487 RSPH4AQ5TD94 716 aa30.67■■■□□ 2.5
UPF3A-201ENST00000351487 PRKRIP1Q9H875 184 aaPredicted RBP30.67■■■□□ 2.5
UPF3A-201ENST00000351487 RALGAPBQ86X10 1494 aa30.67■■■□□ 2.5
UPF3A-201ENST00000351487 BCORL1Q5H9F3 1711 aa30.65■■■□□ 2.5
UPF3A-201ENST00000351487 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.65■■■□□ 2.5
UPF3A-201ENST00000351487 NEFLP07196 543 aa30.65■■■□□ 2.5
UPF3A-201ENST00000351487 USP47Q96K76 1375 aa30.64■■■□□ 2.5
UPF3A-201ENST00000351487 SYCP2Q9BX26 1530 aa30.63■■■□□ 2.49
UPF3A-201ENST00000351487 MYO5CQ9NQX4 1742 aa30.63■■■□□ 2.49
UPF3A-201ENST00000351487 HNRNPUQ00839 825 aaKnown RBP eCLIP30.62■■■□□ 2.49
UPF3A-201ENST00000351487 FAM135AQ9P2D6 1515 aa30.61■■■□□ 2.49
UPF3A-201ENST00000351487 ERCC6L2Q5T890 1561 aa30.6■■■□□ 2.49
UPF3A-201ENST00000351487 UNC13BO14795 1591 aa30.6■■■□□ 2.49
UPF3A-201ENST00000351487 ARHGAP5Q13017 1502 aa30.59■■■□□ 2.49
UPF3A-201ENST00000351487 PLXNC1O60486 1568 aa30.58■■■□□ 2.49
UPF3A-201ENST00000351487 ARID4BQ4LE39 1312 aaPredicted RBP30.57■■■□□ 2.48
UPF3A-201ENST00000351487 PLEKHH2Q8IVE3 1493 aa30.56■■■□□ 2.48
UPF3A-201ENST00000351487 CCDC184Q52MB2 194 aa30.54■■■□□ 2.48
UPF3A-201ENST00000351487 BCANQ96GW7 911 aa30.53■■■□□ 2.48
UPF3A-201ENST00000351487 DHX29Q7Z478 1369 aaKnown RBP30.51■■■□□ 2.47
UPF3A-201ENST00000351487 CLASP1Q7Z460 1538 aa30.51■■■□□ 2.47
UPF3A-201ENST00000351487 ZNF326Q5BKZ1 582 aaKnown RBP30.51■■■□□ 2.47
UPF3A-201ENST00000351487 TSHZ2Q9NRE2 1034 aa30.51■■■□□ 2.47
UPF3A-201ENST00000351487 IQGAP3Q86VI3 1631 aa30.47■■■□□ 2.47
UPF3A-201ENST00000351487 MRS2Q9HD23 443 aa30.47■■■□□ 2.47
UPF3A-201ENST00000351487 ZCCHC11Q5TAX3 1644 aaKnown RBP30.47■■■□□ 2.47
UPF3A-201ENST00000351487 UHRF1BP1LA0JNW5 1464 aa30.46■■■□□ 2.47
UPF3A-201ENST00000351487 ROCK2O75116 1388 aaKnown RBP30.45■■■□□ 2.46
UPF3A-201ENST00000351487 DUOX2Q9NRD8 1548 aa30.42■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms