RNA–Protein interactions for RNA: ENST00000347037.9

SYNE1-202, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,798 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-202ENST00000347037 POLR3GLQ9BT43 218 aa15.16■□□□□ 0.02
SYNE1-202ENST00000347037 SENP3-EIF4A1A0A087X0R7 540 aa15.15■□□□□ 0.02
SYNE1-202ENST00000347037 MPHOSPH9Q99550 1183 aa15.15■□□□□ 0.02
SYNE1-202ENST00000347037 NBR1Q14596 966 aa15.13■□□□□ 0.01
SYNE1-202ENST00000347037 CCDC7Q96M83 1385 aa15.13■□□□□ 0.01
SYNE1-202ENST00000347037 ZBED9Q6R2W3 1325 aa15.13■□□□□ 0.01
SYNE1-202ENST00000347037 SUPT6HQ7KZ85 1726 aaKnown RBP15.11■□□□□ 0.01
SYNE1-202ENST00000347037 DEKP35659 375 aaKnown RBP15.11■□□□□ 0.01
SYNE1-202ENST00000347037 CEP170Q5SW79 1584 aa15.1■□□□□ 0.01
SYNE1-202ENST00000347037 MAGI1Q96QZ7 1491 aaPredicted RBP15.09■□□□□ 0.01
SYNE1-202ENST00000347037 IQGAP2Q13576 1575 aa15.08■□□□□ 0.01
SYNE1-202ENST00000347037 NBPF8Q3BBV2 869 aa15.08■□□□□ 0.01
SYNE1-202ENST00000347037 NOP58Q9Y2X3 529 aaKnown RBP15.08■□□□□ 0.01
SYNE1-202ENST00000347037 EHBP1L1Q8N3D4 1523 aa15.08■□□□□ 0
SYNE1-202ENST00000347037 DENND4BO75064 1496 aaPredicted RBP15.07■□□□□ 0
SYNE1-202ENST00000347037 NCOA1Q15788 1441 aa15.07■□□□□ 0
SYNE1-202ENST00000347037 UGGT2Q9NYU1 1516 aa15.07■□□□□ 0
SYNE1-202ENST00000347037 GRIN2AQ12879 1464 aa15.07■□□□□ 0
SYNE1-202ENST00000347037 KIF7Q2M1P5 1343 aa15.07■□□□□ 0
SYNE1-202ENST00000347037 ZNF326Q5BKZ1 582 aaKnown RBP15.07■□□□□ 0
SYNE1-202ENST00000347037 KDM6BO15054 1643 aa15.06■□□□□ 0
SYNE1-202ENST00000347037 CCDC136Q96JN2 1154 aa15.06■□□□□ 0
SYNE1-202ENST00000347037 MYT1LQ9UL68 1186 aa15.06■□□□□ 0
SYNE1-202ENST00000347037 PAK3O75914 559 aaPredicted RBP15.05■□□□□ -0
SYNE1-202ENST00000347037 AKNAQ7Z591 1439 aa15.04■□□□□ -0
SYNE1-202ENST00000347037 MAGI3Q5TCQ9 1506 aa15.04■□□□□ -0
SYNE1-202ENST00000347037 SLC4A1APQ9BWU0 796 aaKnown RBP15.04■□□□□ -0
SYNE1-202ENST00000347037 HECW1Q76N89 1606 aa15.03■□□□□ -0
SYNE1-202ENST00000347037 SYNJ2O15056 1496 aa15.03■□□□□ -0
SYNE1-202ENST00000347037 ANP32AP39687 249 aaKnown RBP15.01□□□□□ -0.01
SYNE1-202ENST00000347037 CHD1O14646 1710 aa15.01□□□□□ -0.01
SYNE1-202ENST00000347037 DISP1Q96F81 1524 aa15.01□□□□□ -0.01
SYNE1-202ENST00000347037 NUP160Q12769 1436 aa15□□□□□ -0.01
SYNE1-202ENST00000347037 GCC2Q8IWJ2 1684 aa15□□□□□ -0.01
SYNE1-202ENST00000347037 KIAA0556O60303 1618 aa14.99□□□□□ -0.01
SYNE1-202ENST00000347037 NUDCQ9Y266 331 aa14.99□□□□□ -0.01
SYNE1-202ENST00000347037 KIAA0586Q9BVV6 1533 aa14.98□□□□□ -0.01
SYNE1-202ENST00000347037 TCOF1Q13428 1488 aaKnown RBP14.98□□□□□ -0.01
SYNE1-202ENST00000347037 ANKRD30BQ9BXX2 1392 aa14.97□□□□□ -0.01
SYNE1-202ENST00000347037 CDK13Q14004 1512 aaKnown RBP14.96□□□□□ -0.01
SYNE1-202ENST00000347037 ARHGEF11O15085 1522 aa14.96□□□□□ -0.01
SYNE1-202ENST00000347037 RTL5Q5HYW3 569 aaPredicted RBP14.96□□□□□ -0.01
SYNE1-202ENST00000347037 SMG6Q86US8 1419 aaKnown RBP14.96□□□□□ -0.02
SYNE1-202ENST00000347037 RPRD2Q5VT52 1461 aaKnown RBP14.95□□□□□ -0.02
SYNE1-202ENST00000347037 ZNF644Q9H582 1327 aaPredicted RBP14.95□□□□□ -0.02
SYNE1-202ENST00000347037 ZBTB47Q9UFB7 747 aaPredicted RBP14.95□□□□□ -0.02
SYNE1-202ENST00000347037 NPM2Q86SE8 214 aaKnown RBP14.94□□□□□ -0.02
SYNE1-202ENST00000347037 TMC1Q8TDI8 760 aa14.94□□□□□ -0.02
SYNE1-202ENST00000347037 SHROOM2Q13796 1616 aa14.94□□□□□ -0.02
SYNE1-202ENST00000347037 IPO9Q96P70 1041 aaKnown RBP14.94□□□□□ -0.02
SYNE1-202ENST00000347037 EPRSP07814 1512 aaKnown RBP14.94□□□□□ -0.02
SYNE1-202ENST00000347037 TEX14Q8IWB6 1497 aa14.92□□□□□ -0.02
SYNE1-202ENST00000347037 SPATA31E1Q6ZUB1 1445 aa14.92□□□□□ -0.02
SYNE1-202ENST00000347037 MIA2Q96PC5 1412 aa14.92□□□□□ -0.02
SYNE1-202ENST00000347037 SALL2Q9Y467 1007 aaPredicted RBP14.92□□□□□ -0.02
SYNE1-202ENST00000347037 USP47Q96K76 1375 aa14.9□□□□□ -0.02
SYNE1-202ENST00000347037 DAPK1P53355 1430 aa14.9□□□□□ -0.02
SYNE1-202ENST00000347037 DHX29Q7Z478 1369 aaKnown RBP14.89□□□□□ -0.03
SYNE1-202ENST00000347037 ZNF777Q9ULD5 760 aaPredicted RBP14.89□□□□□ -0.03
SYNE1-202ENST00000347037 ABCC5O15440 1437 aa14.87□□□□□ -0.03
SYNE1-202ENST00000347037 PNISRQ8TF01 805 aaKnown RBP14.86□□□□□ -0.03
SYNE1-202ENST00000347037 ROCK1Q13464 1354 aa14.85□□□□□ -0.03
SYNE1-202ENST00000347037 RNF123Q5XPI4 1314 aa14.85□□□□□ -0.03
SYNE1-202ENST00000347037 PKD2Q13563 968 aa14.85□□□□□ -0.03
SYNE1-202ENST00000347037 KDM2AQ9Y2K7 1162 aa14.84□□□□□ -0.03
SYNE1-202ENST00000347037 RAPGEF6Q8TEU7 1601 aa14.83□□□□□ -0.03
SYNE1-202ENST00000347037 CARD11Q9BXL7 1154 aa14.83□□□□□ -0.03
SYNE1-202ENST00000347037 CLASP1Q7Z460 1538 aa14.83□□□□□ -0.03
SYNE1-202ENST00000347037 EXOC6Q8TAG9 804 aa14.83□□□□□ -0.04
SYNE1-202ENST00000347037 LAS1LQ9Y4W2 734 aaKnown RBP14.82□□□□□ -0.04
SYNE1-202ENST00000347037 CFDP1Q9UEE9 299 aaPredicted RBP14.81□□□□□ -0.04
SYNE1-202ENST00000347037 POLR1AO95602 1720 aaPredicted RBP14.81□□□□□ -0.04
SYNE1-202ENST00000347037 BCORL1Q5H9F3 1711 aa14.8□□□□□ -0.04
SYNE1-202ENST00000347037 RRP1P56182 461 aaKnown RBP14.8□□□□□ -0.04
SYNE1-202ENST00000347037 ABCA8O94911 1581 aa14.8□□□□□ -0.04
SYNE1-202ENST00000347037 NUP153P49790 1475 aaKnown RBP14.79□□□□□ -0.04
SYNE1-202ENST00000347037 DNMT1P26358 1616 aaKnown RBP14.78□□□□□ -0.04
SYNE1-202ENST00000347037 PZPP20742 1482 aa14.78□□□□□ -0.04
SYNE1-202ENST00000347037 ST20-MTHFSA0A0A6YYL1 179 aa14.78□□□□□ -0.04
SYNE1-202ENST00000347037 RCAN3Q9UKA8 241 aa14.78□□□□□ -0.04
SYNE1-202ENST00000347037 KIF15Q9NS87 1388 aa14.77□□□□□ -0.04
SYNE1-202ENST00000347037 KIAA1107Q9UPP5 1409 aa14.77□□□□□ -0.05
SYNE1-202ENST00000347037 ADCY10Q96PN6 1610 aa14.76□□□□□ -0.05
SYNE1-202ENST00000347037 NEFMP07197 916 aa14.76□□□□□ -0.05
SYNE1-202ENST00000347037 MYBBP1AQ9BQG0 1328 aaKnown RBP14.76□□□□□ -0.05
SYNE1-202ENST00000347037 PDE4AP27815 886 aa14.76□□□□□ -0.05
SYNE1-202ENST00000347037 ROCK2O75116 1388 aaKnown RBP14.75□□□□□ -0.05
SYNE1-202ENST00000347037 RTN4Q9NQC3 1192 aaKnown RBP14.75□□□□□ -0.05
SYNE1-202ENST00000347037 ARID4BQ4LE39 1312 aaPredicted RBP14.75□□□□□ -0.05
SYNE1-202ENST00000347037 ERCC6L2Q5T890 1561 aa14.75□□□□□ -0.05
SYNE1-202ENST00000347037 TCERG1O14776 1098 aaKnown RBP14.75□□□□□ -0.05
SYNE1-202ENST00000347037 DCAF11Q8TEB1 546 aa14.74□□□□□ -0.05
SYNE1-202ENST00000347037 MBD5Q9P267 1494 aa14.73□□□□□ -0.05
SYNE1-202ENST00000347037 PRG4Q92954 1404 aaPredicted RBP14.73□□□□□ -0.05
SYNE1-202ENST00000347037 PLIN1O60240 522 aa14.73□□□□□ -0.05
SYNE1-202ENST00000347037 RALBP1Q15311 655 aa14.73□□□□□ -0.05
SYNE1-202ENST00000347037 BRD4O60885 1362 aaPredicted RBP14.72□□□□□ -0.05
SYNE1-202ENST00000347037 IL27Q8NEV9 243 aa14.72□□□□□ -0.05
SYNE1-202ENST00000347037 KDM5CP41229 1560 aa14.72□□□□□ -0.05
SYNE1-202ENST00000347037 CAMSAP2Q08AD1 1489 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms