RNA–Protein interactions for RNA: ENST00000345392.2

VHL-202, Transcript of von Hippel-Lindau tumor suppressor, humanhuman

TSL 1 (best) BASIC

Gene VHL, Length 2,696 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VHL-202ENST00000345392 CDK13Q14004 1512 aaKnown RBP24.42■■□□□ 1.5
VHL-202ENST00000345392 CNTLNQ9NXG0 1405 aa24.42■■□□□ 1.5
VHL-202ENST00000345392 KDM6BO15054 1643 aa24.42■■□□□ 1.5
VHL-202ENST00000345392 PBRM1Q86U86 1689 aa24.4■■□□□ 1.5
VHL-202ENST00000345392 L3MBTL2Q969R5 705 aa24.39■■□□□ 1.5
VHL-202ENST00000345392 DENND4BO75064 1496 aaPredicted RBP24.38■■□□□ 1.49
VHL-202ENST00000345392 ARHGEF11O15085 1522 aa24.35■■□□□ 1.49
VHL-202ENST00000345392 ZBED9Q6R2W3 1325 aa24.34■■□□□ 1.49
VHL-202ENST00000345392 CCDC7Q96M83 1385 aa24.34■■□□□ 1.49
VHL-202ENST00000345392 EPRSP07814 1512 aaKnown RBP24.34■■□□□ 1.49
VHL-202ENST00000345392 MPHOSPH9Q99550 1183 aa24.33■■□□□ 1.49
VHL-202ENST00000345392 CNGB1Q14028 1251 aaPredicted RBP24.31■■□□□ 1.48
VHL-202ENST00000345392 CHMP7Q8WUX9 453 aaPredicted RBP24.3■■□□□ 1.48
VHL-202ENST00000345392 IQGAP2Q13576 1575 aa24.3■■□□□ 1.48
VHL-202ENST00000345392 NCOA1Q15788 1441 aa24.3■■□□□ 1.48
VHL-202ENST00000345392 DEKP35659 375 aaKnown RBP24.29■■□□□ 1.48
VHL-202ENST00000345392 HECW1Q76N89 1606 aa24.29■■□□□ 1.48
VHL-202ENST00000345392 ZNF644Q9H582 1327 aaPredicted RBP24.29■■□□□ 1.48
VHL-202ENST00000345392 NBPF8Q3BBV2 869 aa24.28■■□□□ 1.48
VHL-202ENST00000345392 TCOF1Q13428 1488 aaKnown RBP24.27■■□□□ 1.48
VHL-202ENST00000345392 NBR1Q14596 966 aa24.25■■□□□ 1.47
VHL-202ENST00000345392 GCC2Q8IWJ2 1684 aa24.24■■□□□ 1.47
VHL-202ENST00000345392 PAK3O75914 559 aaPredicted RBP24.24■■□□□ 1.47
VHL-202ENST00000345392 SENP3-EIF4A1A0A087X0R7 540 aa24.23■■□□□ 1.47
VHL-202ENST00000345392 NOP58Q9Y2X3 529 aaKnown RBP24.23■■□□□ 1.47
VHL-202ENST00000345392 KIF7Q2M1P5 1343 aa24.23■■□□□ 1.47
VHL-202ENST00000345392 ADAMTS12P58397 1594 aa24.22■■□□□ 1.47
VHL-202ENST00000345392 MYT1LQ9UL68 1186 aa24.2■■□□□ 1.47
VHL-202ENST00000345392 AKNAQ7Z591 1439 aa24.2■■□□□ 1.46
VHL-202ENST00000345392 MAGI1Q96QZ7 1491 aaPredicted RBP24.16■■□□□ 1.46
VHL-202ENST00000345392 POLR3GLQ9BT43 218 aa24.15■■□□□ 1.46
VHL-202ENST00000345392 MIA2Q96PC5 1412 aa24.15■■□□□ 1.46
VHL-202ENST00000345392 DAPK1P53355 1430 aa24.13■■□□□ 1.45
VHL-202ENST00000345392 CCDC136Q96JN2 1154 aa24.13■■□□□ 1.45
VHL-202ENST00000345392 SLC4A1APQ9BWU0 796 aaKnown RBP24.13■■□□□ 1.45
VHL-202ENST00000345392 SYNJ2O15056 1496 aa24.13■■□□□ 1.45
VHL-202ENST00000345392 ANKRD30BQ9BXX2 1392 aa24.12■■□□□ 1.45
VHL-202ENST00000345392 GRIN2AQ12879 1464 aa24.11■■□□□ 1.45
VHL-202ENST00000345392 SPATA31E1Q6ZUB1 1445 aa24.11■■□□□ 1.45
VHL-202ENST00000345392 ABCC5O15440 1437 aa24.1■■□□□ 1.45
VHL-202ENST00000345392 ZNF777Q9ULD5 760 aaPredicted RBP24.09■■□□□ 1.45
VHL-202ENST00000345392 SMG6Q86US8 1419 aaKnown RBP24.09■■□□□ 1.45
VHL-202ENST00000345392 RPRD2Q5VT52 1461 aaKnown RBP24.09■■□□□ 1.45
VHL-202ENST00000345392 NUDCQ9Y266 331 aa24.09■■□□□ 1.45
VHL-202ENST00000345392 NUP153P49790 1475 aaKnown RBP24.07■■□□□ 1.44
VHL-202ENST00000345392 CHD1O14646 1710 aa24.07■■□□□ 1.44
VHL-202ENST00000345392 DISP1Q96F81 1524 aa24.07■■□□□ 1.44
VHL-202ENST00000345392 ZNF326Q5BKZ1 582 aaKnown RBP24.07■■□□□ 1.44
VHL-202ENST00000345392 TEX14Q8IWB6 1497 aa24.07■■□□□ 1.44
VHL-202ENST00000345392 PRG4Q92954 1404 aaPredicted RBP24.04■■□□□ 1.44
VHL-202ENST00000345392 ANP32AP39687 249 aaKnown RBP24.03■■□□□ 1.44
VHL-202ENST00000345392 KIAA0556O60303 1618 aa24.03■■□□□ 1.44
VHL-202ENST00000345392 IPO9Q96P70 1041 aaKnown RBP24.03■■□□□ 1.44
VHL-202ENST00000345392 DHX29Q7Z478 1369 aaKnown RBP24.02■■□□□ 1.44
VHL-202ENST00000345392 RNF123Q5XPI4 1314 aa24.01■■□□□ 1.43
VHL-202ENST00000345392 CEP170Q5SW79 1584 aa24■■□□□ 1.43
VHL-202ENST00000345392 DNMT1P26358 1616 aaKnown RBP24■■□□□ 1.43
VHL-202ENST00000345392 CFDP1Q9UEE9 299 aaPredicted RBP23.99■■□□□ 1.43
VHL-202ENST00000345392 KIAA0586Q9BVV6 1533 aa23.98■■□□□ 1.43
VHL-202ENST00000345392 ZBTB47Q9UFB7 747 aaPredicted RBP23.98■■□□□ 1.43
VHL-202ENST00000345392 ROCK1Q13464 1354 aa23.98■■□□□ 1.43
VHL-202ENST00000345392 RAPGEF6Q8TEU7 1601 aa23.97■■□□□ 1.43
VHL-202ENST00000345392 PLB1Q6P1J6 1458 aa23.96■■□□□ 1.43
VHL-202ENST00000345392 POLR1AO95602 1720 aaPredicted RBP23.94■■□□□ 1.42
VHL-202ENST00000345392 PNISRQ8TF01 805 aaKnown RBP23.93■■□□□ 1.42
VHL-202ENST00000345392 USP47Q96K76 1375 aa23.93■■□□□ 1.42
VHL-202ENST00000345392 TMC1Q8TDI8 760 aa23.93■■□□□ 1.42
VHL-202ENST00000345392 CAMSAP2Q08AD1 1489 aa23.93■■□□□ 1.42
VHL-202ENST00000345392 PZPP20742 1482 aa23.92■■□□□ 1.42
VHL-202ENST00000345392 RTL5Q5HYW3 569 aaPredicted RBP23.91■■□□□ 1.42
VHL-202ENST00000345392 PKD2Q13563 968 aa23.89■■□□□ 1.42
VHL-202ENST00000345392 KIF14Q15058 1648 aa23.89■■□□□ 1.42
VHL-202ENST00000345392 BCORL1Q5H9F3 1711 aa23.89■■□□□ 1.42
VHL-202ENST00000345392 NUP160Q12769 1436 aa23.89■■□□□ 1.42
VHL-202ENST00000345392 NPM2Q86SE8 214 aaKnown RBP23.89■■□□□ 1.41
VHL-202ENST00000345392 JPH4Q96JJ6 628 aa23.89■■□□□ 1.41
VHL-202ENST00000345392 TROQ12816 1431 aaPredicted RBP23.87■■□□□ 1.41
VHL-202ENST00000345392 GPATCH8Q9UKJ3 1502 aaKnown RBP23.85■■□□□ 1.41
VHL-202ENST00000345392 OSCARQ8IYS5 282 aa23.84■■□□□ 1.41
VHL-202ENST00000345392 SALL2Q9Y467 1007 aaPredicted RBP23.84■■□□□ 1.41
VHL-202ENST00000345392 EXOC6Q8TAG9 804 aa23.83■■□□□ 1.4
VHL-202ENST00000345392 KDM2AQ9Y2K7 1162 aa23.79■■□□□ 1.4
VHL-202ENST00000345392 MBD5Q9P267 1494 aa23.79■■□□□ 1.4
VHL-202ENST00000345392 RRP1P56182 461 aaKnown RBP23.78■■□□□ 1.4
VHL-202ENST00000345392 KIAA1107Q9UPP5 1409 aa23.78■■□□□ 1.4
VHL-202ENST00000345392 CARD11Q9BXL7 1154 aa23.77■■□□□ 1.39
VHL-202ENST00000345392 LAS1LQ9Y4W2 734 aaKnown RBP23.76■■□□□ 1.39
VHL-202ENST00000345392 ARID4BQ4LE39 1312 aaPredicted RBP23.75■■□□□ 1.39
VHL-202ENST00000345392 ANKRD50Q9ULJ7 1429 aa23.75■■□□□ 1.39
VHL-202ENST00000345392 NUP155O75694 1391 aa23.74■■□□□ 1.39
VHL-202ENST00000345392 ANKRD30AQ9BXX3 1397 aa23.74■■□□□ 1.39
VHL-202ENST00000345392 KDM5CP41229 1560 aa23.74■■□□□ 1.39
VHL-202ENST00000345392 ITSN2Q9NZM3 1697 aa23.73■■□□□ 1.39
VHL-202ENST00000345392 ST20-MTHFSA0A0A6YYL1 179 aa23.73■■□□□ 1.39
VHL-202ENST00000345392 PDE4AP27815 886 aa23.73■■□□□ 1.39
VHL-202ENST00000345392 RCAN3Q9UKA8 241 aa23.73■■□□□ 1.39
VHL-202ENST00000345392 ERCC6L2Q5T890 1561 aa23.73■■□□□ 1.39
VHL-202ENST00000345392 KIF15Q9NS87 1388 aa23.73■■□□□ 1.39
VHL-202ENST00000345392 ADGBQ8N7X0 1667 aa23.72■■□□□ 1.39
VHL-202ENST00000345392 LRPPRCP42704 1394 aaKnown RBP23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms